BDGP Sequence Production Resources |
Search the DGRC for GH06247
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 62 |
Well: | 47 |
Vector: | pOT2 |
Associated Gene/Transcript | Pop2-RA |
Protein status: | GH06247.pep: gold |
Preliminary Size: | 1966 |
Sequenced Size: | 1662 |
Gene | Date | Evidence |
---|---|---|
CG5684 | 2001-07-04 | Blastp of sequenced clone |
Pop2 | 2008-04-29 | Release 5.5 accounting |
Pop2 | 2008-08-15 | Release 5.9 accounting |
Pop2 | 2008-12-18 | 5.12 accounting |
1662 bp (1662 high quality bases) assembled on 2001-07-04
GenBank Submission: AY047553
> GH06247.complete CAATCGCGAACAATTTTTTATTATGGCACTTGCGCGGCTCACAAACGATA TTCGCTGATAAACATTCATTGGAAATTATTGCCGAACGCAGAGGACTCCG CCAATTGAAGTGTGCGCTTAAAACGATCGCCGTGCAGGAAGCGGAAGTGC CCCATAACAGCTATTTTCTCGCCGCTTTCTCCCCCATCACCCCCCCGCAA AACAAGCGACGCCGATAGAAACATTTAATTTGTGCAAATAGCCGAAACCT ACACGGTCGGCCATCAAATATTATGAAATGGACAATGCCCTCGGCCATCA GTGGCGCGCCACATGCCCACATACCCAGCAACGAGGAGTGCGGCATCCGC GATGTGTGGAAGCAAAACCTGGAGGAGGAGTTCCGCACCATACGGAAAGT GGTGCAGAAGTACCACTATGTGGCCATGGACACCGAGTTTCCAGGCGTGG TAGCACGTCCAGTCGGCGAGTTCCGCTCCACGGCGGACTATCATTACCAG CTGCTGCGCTGTAATGTCGATCTGCTGCGGATTATCCAATTGGGCCTTAC CTTCATGGACGACGATGGAAAGACACCACCCGGCTACTCCACCTGGCAGT TCAACTTCAAGTTTAACCTGAGCGAGGACATGTATGCGCAGGACTCGATC GATCTGCTGCAGAACTCCGGAATTCAGTTCAAGAAGCACGAGGAGGATGG CATCGATCCCATCGACTTCGCCGAACTGCTGATGAGCTCTGGCATCGTGC TGGTGGAAAACATCAAGTGGCTGTGCTTCCACTCCGGCTACGATTTTGGC TACCTTCTAAAGCTGCTCACCGATCAGAACCTGCCCCCGGACGAATCTGA ATTTTTCGATCTGCTGCACATCTACTTTCCCAACATCTTCGACATCAAGT ATCTGATGAAGTCGTGCAAGAACCTGAAAGGCGGCCTGCAGGAGGTTGCC GATCAGCTGGAACTGCGGCGCGTGGGCCCCCAGCATCAGGCCGGCTCGGA TGCTCTGCTGACGGGCATGGCCTTCTTCAAAATGCGTGAGATGTTCTTCG AGGACAACATCGACCATGCGAAGTACTCCGGACACCTGTACGGCCTGGGT ACCTCCTTCATCGTCAATGGCACCAACTTCCACGACAGCAACGGTGAGAC GAACAGCGCTTCATGATTCGTACTGATGGGGAACGTGGTCGTGCACGACA GGAAGTTCGAGCAGGAGGAATCACCGGGTCCGTCGGCATCTGTGCAGGCC ACACCACCTGGCCAACTGATCCTAGCCGTAACAACACCATTGCAGTAATC TGTGGACAGTCGACACAGATCGTTCCCATTTGTGAACAATTATACCCCGT TGGCCATAAAGCTAACTTCTTGATGTTTCCCACGCAAGTTCAGATGAATA GGCAACCGTTCAATACGAAAACATGGCATAAACTAATTGTAAATCGCATA GAAATGAAAAACCGGCAAAACTAAAATAGATTCAATTTCAAGTTCTGCAT GTCTTAAATGTGTTACGAATACAAAACTAAGGTATGTAAAATTAAGCTAA AACTGTAAGCCAATGAGCGAAACAGAGAATATTGTGTATTTGTAAAAAGA GCAAAAAAACAATATATTTAAAACTTTTTAATTTAGTGTAAAAAAAAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pop2-RA | 1752 | Pop2-RA | 110..1749 | 1..1640 | 8200 | 100 | Plus |
Pop2.a | 1949 | Pop2.a | 588..1946 | 282..1640 | 6795 | 100 | Plus |
Pop2-RC | 1866 | Pop2-RC | 505..1863 | 282..1640 | 6795 | 100 | Plus |
Pop2.a | 1949 | Pop2.a | 37..317 | 1..281 | 1405 | 100 | Plus |
Pop2-RC | 1866 | Pop2-RC | 85..365 | 1..281 | 1405 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 11989201..11989801 | 1639..1039 | 2975 | 99.7 | Minus |
chr3L | 24539361 | chr3L | 11991076..11991495 | 1040..621 | 2100 | 100 | Minus |
chr3L | 24539361 | chr3L | 11991553..11991894 | 622..281 | 1710 | 100 | Minus |
chr3L | 24539361 | chr3L | 11993386..11993666 | 281..1 | 1390 | 99.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 11998397..11998998 | 1640..1039 | 3010 | 100 | Minus |
3L | 28110227 | 3L | 12000273..12000692 | 1040..621 | 2100 | 100 | Minus |
3L | 28110227 | 3L | 12000750..12001091 | 622..281 | 1710 | 100 | Minus |
3L | 28110227 | 3L | 12002586..12002866 | 281..1 | 1405 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 11991497..11992098 | 1640..1039 | 3010 | 100 | Minus |
3L | 28103327 | 3L | 11993373..11993792 | 1040..621 | 2100 | 100 | Minus |
3L | 28103327 | 3L | 11993850..11994191 | 622..281 | 1710 | 100 | Minus |
3L | 28103327 | 3L | 11995686..11995966 | 281..1 | 1405 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Paris | 1730 | Dvir\Paris TV1 1730bp Derived from Z49253. | 1464..1580 | 1554..1431 | 125 | 61.6 | Minus |
Dvir\Paris | 1730 | Dvir\Paris TV1 1730bp Derived from Z49253. | 151..197 | 1431..1477 | 118 | 72.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 11993386..11993666 | 1..281 | 99 | Minus | |
chr3L | 11989201..11989799 | 1041..1639 | 99 | <- | Minus |
chr3L | 11991076..11991493 | 623..1040 | 100 | <- | Minus |
chr3L | 11991553..11991893 | 282..622 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pop2-RA | 1..894 | 273..1166 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pop2-RA | 1..894 | 273..1166 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pop2-RA | 1..894 | 273..1166 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pop2-RA | 1..894 | 273..1166 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pop2-RA | 1..894 | 273..1166 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pop2-RA | 48..1686 | 1..1639 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pop2-RA | 48..1686 | 1..1639 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pop2-RA | 50..1688 | 1..1639 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pop2-RA | 48..1686 | 1..1639 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pop2-RA | 50..1688 | 1..1639 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11998398..11998996 | 1041..1639 | 100 | <- | Minus |
3L | 12000273..12000690 | 623..1040 | 100 | <- | Minus |
3L | 12000750..12001090 | 282..622 | 100 | <- | Minus |
3L | 12002586..12002866 | 1..281 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11998398..11998996 | 1041..1639 | 100 | <- | Minus |
3L | 12000273..12000690 | 623..1040 | 100 | <- | Minus |
3L | 12000750..12001090 | 282..622 | 100 | <- | Minus |
3L | 12002586..12002866 | 1..281 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11998398..11998996 | 1041..1639 | 100 | <- | Minus |
3L | 12000273..12000690 | 623..1040 | 100 | <- | Minus |
3L | 12000750..12001090 | 282..622 | 100 | <- | Minus |
3L | 12002586..12002866 | 1..281 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 11991498..11992096 | 1041..1639 | 100 | <- | Minus |
arm_3L | 11993373..11993790 | 623..1040 | 100 | <- | Minus |
arm_3L | 11993850..11994190 | 282..622 | 100 | <- | Minus |
arm_3L | 11995686..11995966 | 1..281 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11991498..11992096 | 1041..1639 | 100 | <- | Minus |
3L | 11993373..11993790 | 623..1040 | 100 | <- | Minus |
3L | 11993850..11994190 | 282..622 | 100 | <- | Minus |
3L | 11995686..11995966 | 1..281 | 100 | Minus |
Translation from 272 to 1165
> GH06247.pep MKWTMPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYV AMDTEFPGVVARPVGEFRSTADYHYQLLRCNVDLLRIIQLGLTFMDDDGK TPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFA ELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHI YFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMA FFKMREMFFEDNIDHAKYSGHLYGLGTSFIVNGTNFHDSNGETNSAS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10398-PA | 296 | GF10398-PA | 1..296 | 4..297 | 1522 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13860-PA | 297 | GG13860-PA | 1..297 | 1..297 | 1568 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16922-PA | 324 | GH16922-PA | 29..324 | 4..297 | 1514 | 94.6 | Plus |
Dgri\GH12756-PA | 265 | GH12756-PA | 5..244 | 18..257 | 1063 | 82.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pop2-PA | 297 | CG5684-PA | 1..297 | 1..297 | 1594 | 100 | Plus |
Pop2-PB | 293 | CG5684-PB | 1..293 | 5..297 | 1568 | 100 | Plus |
Pop2-PC | 293 | CG5684-PC | 1..293 | 5..297 | 1568 | 100 | Plus |
Pop2-PE | 361 | CG5684-PE | 1..257 | 1..257 | 1372 | 99.6 | Plus |
Pop2-PD | 357 | CG5684-PD | 1..253 | 5..257 | 1346 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13677-PA | 324 | GI13677-PA | 29..324 | 4..297 | 1527 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17886-PA | 295 | GL17886-PA | 1..295 | 5..297 | 1516 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19054-PA | 295 | GA19054-PA | 1..295 | 5..297 | 1516 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24684-PA | 38 | GM24684-PA | 1..38 | 249..297 | 174 | 75.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12753-PA | 152 | GD12753-PA | 1..137 | 1..137 | 755 | 100 | Plus |
Dsim\GD12039-PA | 208 | GD12039-PA | 1..117 | 154..271 | 560 | 89.8 | Plus |
Dsim\GD12754-PA | 220 | GD12754-PA | 1..104 | 154..257 | 559 | 99 | Plus |
Dsim\GD12754-PA | 220 | GD12754-PA | 180..220 | 257..297 | 213 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14014-PA | 324 | GJ14014-PA | 29..324 | 4..297 | 1517 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17222-PA | 295 | GK17222-PA | 1..295 | 5..297 | 1507 | 94.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20153-PA | 297 | GE20153-PA | 1..297 | 1..297 | 1568 | 97.3 | Plus |
Translation from 272 to 1165
> GH06247.hyp MKWTMPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYV AMDTEFPGVVARPVGEFRSTADYHYQLLRCNVDLLRIIQLGLTFMDDDGK TPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFA ELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHI YFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMA FFKMREMFFEDNIDHAKYSGHLYGLGTSFIVNGTNFHDSNGETNSAS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pop2-PA | 297 | CG5684-PA | 1..297 | 1..297 | 1594 | 100 | Plus |
Pop2-PB | 293 | CG5684-PB | 1..293 | 5..297 | 1568 | 100 | Plus |
Pop2-PC | 293 | CG5684-PC | 1..293 | 5..297 | 1568 | 100 | Plus |
Pop2-PE | 361 | CG5684-PE | 1..257 | 1..257 | 1372 | 99.6 | Plus |
Pop2-PD | 357 | CG5684-PD | 1..253 | 5..257 | 1346 | 99.6 | Plus |