Clone GH06247 Report

Search the DGRC for GH06247

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:62
Well:47
Vector:pOT2
Associated Gene/TranscriptPop2-RA
Protein status:GH06247.pep: gold
Preliminary Size:1966
Sequenced Size:1662

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5684 2001-07-04 Blastp of sequenced clone
Pop2 2008-04-29 Release 5.5 accounting
Pop2 2008-08-15 Release 5.9 accounting
Pop2 2008-12-18 5.12 accounting

Clone Sequence Records

GH06247.complete Sequence

1662 bp (1662 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047553

> GH06247.complete
CAATCGCGAACAATTTTTTATTATGGCACTTGCGCGGCTCACAAACGATA
TTCGCTGATAAACATTCATTGGAAATTATTGCCGAACGCAGAGGACTCCG
CCAATTGAAGTGTGCGCTTAAAACGATCGCCGTGCAGGAAGCGGAAGTGC
CCCATAACAGCTATTTTCTCGCCGCTTTCTCCCCCATCACCCCCCCGCAA
AACAAGCGACGCCGATAGAAACATTTAATTTGTGCAAATAGCCGAAACCT
ACACGGTCGGCCATCAAATATTATGAAATGGACAATGCCCTCGGCCATCA
GTGGCGCGCCACATGCCCACATACCCAGCAACGAGGAGTGCGGCATCCGC
GATGTGTGGAAGCAAAACCTGGAGGAGGAGTTCCGCACCATACGGAAAGT
GGTGCAGAAGTACCACTATGTGGCCATGGACACCGAGTTTCCAGGCGTGG
TAGCACGTCCAGTCGGCGAGTTCCGCTCCACGGCGGACTATCATTACCAG
CTGCTGCGCTGTAATGTCGATCTGCTGCGGATTATCCAATTGGGCCTTAC
CTTCATGGACGACGATGGAAAGACACCACCCGGCTACTCCACCTGGCAGT
TCAACTTCAAGTTTAACCTGAGCGAGGACATGTATGCGCAGGACTCGATC
GATCTGCTGCAGAACTCCGGAATTCAGTTCAAGAAGCACGAGGAGGATGG
CATCGATCCCATCGACTTCGCCGAACTGCTGATGAGCTCTGGCATCGTGC
TGGTGGAAAACATCAAGTGGCTGTGCTTCCACTCCGGCTACGATTTTGGC
TACCTTCTAAAGCTGCTCACCGATCAGAACCTGCCCCCGGACGAATCTGA
ATTTTTCGATCTGCTGCACATCTACTTTCCCAACATCTTCGACATCAAGT
ATCTGATGAAGTCGTGCAAGAACCTGAAAGGCGGCCTGCAGGAGGTTGCC
GATCAGCTGGAACTGCGGCGCGTGGGCCCCCAGCATCAGGCCGGCTCGGA
TGCTCTGCTGACGGGCATGGCCTTCTTCAAAATGCGTGAGATGTTCTTCG
AGGACAACATCGACCATGCGAAGTACTCCGGACACCTGTACGGCCTGGGT
ACCTCCTTCATCGTCAATGGCACCAACTTCCACGACAGCAACGGTGAGAC
GAACAGCGCTTCATGATTCGTACTGATGGGGAACGTGGTCGTGCACGACA
GGAAGTTCGAGCAGGAGGAATCACCGGGTCCGTCGGCATCTGTGCAGGCC
ACACCACCTGGCCAACTGATCCTAGCCGTAACAACACCATTGCAGTAATC
TGTGGACAGTCGACACAGATCGTTCCCATTTGTGAACAATTATACCCCGT
TGGCCATAAAGCTAACTTCTTGATGTTTCCCACGCAAGTTCAGATGAATA
GGCAACCGTTCAATACGAAAACATGGCATAAACTAATTGTAAATCGCATA
GAAATGAAAAACCGGCAAAACTAAAATAGATTCAATTTCAAGTTCTGCAT
GTCTTAAATGTGTTACGAATACAAAACTAAGGTATGTAAAATTAAGCTAA
AACTGTAAGCCAATGAGCGAAACAGAGAATATTGTGTATTTGTAAAAAGA
GCAAAAAAACAATATATTTAAAACTTTTTAATTTAGTGTAAAAAAAAAAA
AAAAAAAAAAAA

GH06247.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
Pop2-RA 1752 Pop2-RA 110..1749 1..1640 8200 100 Plus
Pop2.a 1949 Pop2.a 588..1946 282..1640 6795 100 Plus
Pop2-RC 1866 Pop2-RC 505..1863 282..1640 6795 100 Plus
Pop2.a 1949 Pop2.a 37..317 1..281 1405 100 Plus
Pop2-RC 1866 Pop2-RC 85..365 1..281 1405 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11989201..11989801 1639..1039 2975 99.7 Minus
chr3L 24539361 chr3L 11991076..11991495 1040..621 2100 100 Minus
chr3L 24539361 chr3L 11991553..11991894 622..281 1710 100 Minus
chr3L 24539361 chr3L 11993386..11993666 281..1 1390 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:34:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11998397..11998998 1640..1039 3010 100 Minus
3L 28110227 3L 12000273..12000692 1040..621 2100 100 Minus
3L 28110227 3L 12000750..12001091 622..281 1710 100 Minus
3L 28110227 3L 12002586..12002866 281..1 1405 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11991497..11992098 1640..1039 3010 100 Minus
3L 28103327 3L 11993373..11993792 1040..621 2100 100 Minus
3L 28103327 3L 11993850..11994191 622..281 1710 100 Minus
3L 28103327 3L 11995686..11995966 281..1 1405 100 Minus
Blast to na_te.dros performed 2019-03-16 17:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Paris 1730 Dvir\Paris TV1 1730bp Derived from Z49253. 1464..1580 1554..1431 125 61.6 Minus
Dvir\Paris 1730 Dvir\Paris TV1 1730bp Derived from Z49253. 151..197 1431..1477 118 72.3 Plus

GH06247.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:00:37 Download gff for GH06247.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11993386..11993666 1..281 99   Minus
chr3L 11989201..11989799 1041..1639 99 <- Minus
chr3L 11991076..11991493 623..1040 100 <- Minus
chr3L 11991553..11991893 282..622 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:20:16 Download gff for GH06247.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 1..894 273..1166 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:29:24 Download gff for GH06247.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 1..894 273..1166 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:06:02 Download gff for GH06247.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 1..894 273..1166 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:02:48 Download gff for GH06247.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 1..894 273..1166 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:25:36 Download gff for GH06247.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 1..894 273..1166 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:29:49 Download gff for GH06247.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 48..1686 1..1639 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:29:24 Download gff for GH06247.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 48..1686 1..1639 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:06:02 Download gff for GH06247.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 50..1688 1..1639 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:02:48 Download gff for GH06247.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 48..1686 1..1639 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:25:36 Download gff for GH06247.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 50..1688 1..1639 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:00:37 Download gff for GH06247.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11998398..11998996 1041..1639 100 <- Minus
3L 12000273..12000690 623..1040 100 <- Minus
3L 12000750..12001090 282..622 100 <- Minus
3L 12002586..12002866 1..281 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:00:37 Download gff for GH06247.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11998398..11998996 1041..1639 100 <- Minus
3L 12000273..12000690 623..1040 100 <- Minus
3L 12000750..12001090 282..622 100 <- Minus
3L 12002586..12002866 1..281 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:00:37 Download gff for GH06247.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11998398..11998996 1041..1639 100 <- Minus
3L 12000273..12000690 623..1040 100 <- Minus
3L 12000750..12001090 282..622 100 <- Minus
3L 12002586..12002866 1..281 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:06:02 Download gff for GH06247.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11991498..11992096 1041..1639 100 <- Minus
arm_3L 11993373..11993790 623..1040 100 <- Minus
arm_3L 11993850..11994190 282..622 100 <- Minus
arm_3L 11995686..11995966 1..281 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:40:49 Download gff for GH06247.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11991498..11992096 1041..1639 100 <- Minus
3L 11993373..11993790 623..1040 100 <- Minus
3L 11993850..11994190 282..622 100 <- Minus
3L 11995686..11995966 1..281 100   Minus

GH06247.pep Sequence

Translation from 272 to 1165

> GH06247.pep
MKWTMPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYV
AMDTEFPGVVARPVGEFRSTADYHYQLLRCNVDLLRIIQLGLTFMDDDGK
TPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFA
ELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHI
YFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMA
FFKMREMFFEDNIDHAKYSGHLYGLGTSFIVNGTNFHDSNGETNSAS*

GH06247.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10398-PA 296 GF10398-PA 1..296 4..297 1522 95.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13860-PA 297 GG13860-PA 1..297 1..297 1568 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16922-PA 324 GH16922-PA 29..324 4..297 1514 94.6 Plus
Dgri\GH12756-PA 265 GH12756-PA 5..244 18..257 1063 82.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
Pop2-PA 297 CG5684-PA 1..297 1..297 1594 100 Plus
Pop2-PB 293 CG5684-PB 1..293 5..297 1568 100 Plus
Pop2-PC 293 CG5684-PC 1..293 5..297 1568 100 Plus
Pop2-PE 361 CG5684-PE 1..257 1..257 1372 99.6 Plus
Pop2-PD 357 CG5684-PD 1..253 5..257 1346 99.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13677-PA 324 GI13677-PA 29..324 4..297 1527 95.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17886-PA 295 GL17886-PA 1..295 5..297 1516 95.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19054-PA 295 GA19054-PA 1..295 5..297 1516 95.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24684-PA 38 GM24684-PA 1..38 249..297 174 75.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12753-PA 152 GD12753-PA 1..137 1..137 755 100 Plus
Dsim\GD12039-PA 208 GD12039-PA 1..117 154..271 560 89.8 Plus
Dsim\GD12754-PA 220 GD12754-PA 1..104 154..257 559 99 Plus
Dsim\GD12754-PA 220 GD12754-PA 180..220 257..297 213 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14014-PA 324 GJ14014-PA 29..324 4..297 1517 94.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17222-PA 295 GK17222-PA 1..295 5..297 1507 94.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20153-PA 297 GE20153-PA 1..297 1..297 1568 97.3 Plus

GH06247.hyp Sequence

Translation from 272 to 1165

> GH06247.hyp
MKWTMPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYV
AMDTEFPGVVARPVGEFRSTADYHYQLLRCNVDLLRIIQLGLTFMDDDGK
TPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFA
ELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHI
YFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMA
FFKMREMFFEDNIDHAKYSGHLYGLGTSFIVNGTNFHDSNGETNSAS*

GH06247.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
Pop2-PA 297 CG5684-PA 1..297 1..297 1594 100 Plus
Pop2-PB 293 CG5684-PB 1..293 5..297 1568 100 Plus
Pop2-PC 293 CG5684-PC 1..293 5..297 1568 100 Plus
Pop2-PE 361 CG5684-PE 1..257 1..257 1372 99.6 Plus
Pop2-PD 357 CG5684-PD 1..253 5..257 1346 99.6 Plus