Clone GH06271 Report

Search the DGRC for GH06271

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:62
Well:71
Vector:pOT2
Associated Gene/TranscriptMms19-RB
Protein status:GH06271.pep: gold
Preliminary Size:562
Sequenced Size:3240

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12005 2001-01-01 Release 2 assignment
CG12005 2001-09-19 Blastp of sequenced clone
CG12005 2003-01-01 Sim4 clustering to Release 3
Mms19 2008-04-29 Release 5.5 accounting
Mms19 2008-08-15 Release 5.9 accounting
Mms19 2008-12-18 5.12 accounting

Clone Sequence Records

GH06271.complete Sequence

3240 bp (3240 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058300

> GH06271.complete
ACAAGTCATCGGTTATCGGTTCTTAACATTTCGGCTTAACGTGCTTAAAC
TCATTTAAATTTAGACACCACTCAAGCGACGGTGCCGCAATGACAACGCC
CACGCGCGCCACCCTGGAAAAGGCTCTGAAAAGCGACCAGAAGCTTGTGA
ATTCCGCCACACAGATAGCCAAGGATCTGACCGCCAAGGCATATGACATA
TCTGCTCTGGCCGAGGCACTGGGCTTCGCCCTGTCCTCTCCGGACATGGA
GGAGCGTGTGGCCGGAACCAACTTGCTCTCCGCCGTGTTGATAGCACTGC
CCCAGGATCTGCTGCAAGAGCGGCAGCTGGAGTTCCTCAGCACCTTTTAC
ATGGACCGCCTGCGCGACCATCACAACGTAATGCCAGCCATTATCGATGG
AATCGACGCCCTGGTTCACATGAAAGCTCTACCGCGCGCCCAGATTCCCC
AGATTCTGCAGTCATTCTTCGAGCACACCACCTGCCAGTCGCAGACGCGG
AGCGACCGCACCAAGCTGTTCCACATTTTCCAGTACTTGACGGAAAACTT
CCAGGACGAGCTGCAAGCGATGGCCGGTGACTTCGTCTACGGCCTGATCA
ATTCCATTGACGGCGAGCGTGACCCCCGCAACCTTGACATCATTTTCAGC
TTCATGCCCGAGTTCTTGTCAACGTATCCGCTGCTGCATTTGGCCGAAGA
GATGTTTGAGATCTTTGCGTGTTACTTTCCAATCGACTTTAATCCCAGCA
AGCAGGATCCAGCGGCCATAACCCGTGATGAATTGTCCAAGAAGTTGACT
AACTGCCTGGTAGCCAACAACGAATTCGCTGAGGGCACAGTGGTACTGGC
CATAGAAAAGCTGGAGAGTGAGTTGCTGGTTGCCAAACTGGACTCCATAG
AACTGCTGCACCAAGCTGCCGTGAAGTTCCCGCCTTCCGTTCTGGAGCCG
CACTTCGATCAGATATGGCAGGCTCTGAAAACAGAGACTTTTCCAGGAAA
TGACAATGAGGAGATACTGAAAGCTTCCCTTAAGGCGTTGTCTGCGCTCC
TGGAGAGAGCTGCTCACATACCGGATATAAGCCACAGCTACCAGAGCTCT
ATTCTGGGCGTAATTCTACCGCATCTCAGCGATGTCAATCAGCGGCTCTT
CCATCCTGCCACCGGGATCGCCTTAGTTTGTGTATCGGGAGATGCGCCCT
ATGCAGCGGACAAAATCCTCAACAGCTTTTTGCTCAAGCTGCAGGCCGCA
GATGCTAGTTCTGAGCAGCGGATCAAGATCTATTACATAGTTAGCCAAGT
CTATAAGCTATCTGCGTTGCGTGGCTCTCTCCAGAAATTGGACACCACGA
TACGCGAGTCTGTGCAGGACGATGTAATCGCCTCCCTACGCCTAATTGAA
CAGGAAGAGTTCGATGCCAAGAAGGAGGACTTGGAGTTGCAGAAGGCGGC
CCTTTCGGTGCTTAACGAAAGTGCTCCTCTTCTCAACGAGAAACAACGCG
CTTTAATTTACAAAGCTCTGGTTCAGCTTGTCAGCCATCCGTCCATCGAC
ATCGATTTCACCACACTGACGGTTAGCCTTGGAGCCCTGCAACCGGTGGA
GGTGCAGTCAAATTTCATTGATGTTTGCGTGCGAAATTTCGAGATTTTCT
CCACATTTGTCAAACGAAAGATATACACAAATTTATTGCCGCTCATGCCT
CAAATAGCGTTCACTCAACGCATTCTAGATTTGGTTATGACACAGACGTT
TAACGATACTACTGCAGAGCCCGTCCGTTTATTGGCTCTGGAAGCATTAA
ACAAACTGCTCCTGCTAGCGGATCAGCGCTTTATCGTGGACGTGCAGCAG
GAGTCCAATCTTCTTCACAAGCTCATCGAACTGGGCCAGAAGACCGAGGG
TCTGTCTATGCAGTCGCTAGAACAGATTGCGGGCGCTTTAAGTCGTATCA
CGCAACAGCTCCCGCTCTCCGAACAAAGCGCTATAGTAAGCGAGTATCTT
CCTGGACTCAATCTGAGTCAATCGGCTGATTTGTACATTACCAAGGGCCT
GCTGGGCTACCTTCATAAAGACATAACCCTGGATGACCACTTCGAGCGGC
TTCTGACCGATTTGACGCAGCTTTCGCTTAATTCGGACAACGAACAGTTG
CGTGTAATCGCTCACCACCTGCTCTGTAGCATGGTCAACAAGATGGAGTC
GAACCCAGCTAATCTAAGGAAGGTCAAAAAAATCACGGAGCAACTGAAGG
TGGCTATTAAAAAGGGCGATGTTCGGGCGGTGGAGATCCTTGCATGGGTG
GGGAAGGGCCTAGTAGTCGCAGGATTCGATGAGGCTGCCGATGTTGTTGG
TGATCTCTCGGATCTACTAAAACATCCCAGTTTGAGCACTGCCGCTGCCT
TGGGATTCGACATCATTGCCGCCGAGTACCCAGAATTGGATTTGCCTGTC
GTTAAATTCCTCTACAAGCAGAAGCTTTTCCACACTATCATGGGAAAAAT
GGGCAGCAAACTTGCCAACTACTGTGTGCACCACTTGAAGGCTTTTGTCT
ACGTACTGAAAGCCACGCCACAGGCGGTTATTAAGCTAAACATTGAGCAG
CTCGGTCCGCTGCTTTTCAAGAGCTTGGAGGAGCACAACGAGGCGCAGTC
GCTGTGCATTGCATTGGGCATCTGTGAAAAGTTTGTGGCGCAGCAGGACA
CGTATTTCCAAGGGCATTTGGCCCACCTCATACCCAGCTGTCTGGAGCTG
TCGAAATACAAGGCTCAGCATACCATGCAAGTGCGAATTGCGGCGCTGCA
GCTGCTCTACGATGTGACAAAGTATCCTACCTTCGTCCTGTTGCCCCACA
AAGTCGATGTTACTCTGGCCCTGGCCGCCGCCTTGGATGATCCCAAGCGT
CTGGTGCGGAACACAGCGGTGAAGGCCAGGAATGCGTGGTACCTGGTCGG
TGCGCCTAGTCCGAATTAGCAGAGAAACAACTCCGTTCTTGTTAATATTA
TAATCCAATAAGCACACGCACAAATTCTTCATAATTTTCTTGTTGTTTTT
ATTAGGGTGCGTTGAAGAATTTTTGATAAAGAATTTGGAAAAAGCAAAAT
TATAAAGTAAACGCGAAATTGTATGCATTTTATATTACTTAGATACATTT
ACGAACGTTTATGCGCAAATGTATTAAAGTTTAAGATGTTAAGAAAGAAA
TGCTTATTTCTTTTCTTAAAGGCAAAAAAAAAAAAAAAAA

GH06271.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
Mms19-RB 3345 Mms19-RB 122..3345 1..3224 16120 100 Plus
retinophilin-RA 1108 retinophilin-RA 836..1108 3224..2952 1365 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1059456..1060902 908..2354 7235 100 Plus
chr3R 27901430 chr3R 1061506..1061952 2777..3223 2235 100 Plus
chr3R 27901430 chr3R 1060970..1061392 2355..2777 2100 99.8 Plus
chr3R 27901430 chr3R 1058454..1058838 174..558 1925 100 Plus
chr3R 27901430 chr3R 1059048..1059398 558..908 1755 100 Plus
chr3R 27901430 chr3R 1058217..1058390 1..174 870 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:34:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5233792..5235238 908..2354 7235 100 Plus
3R 32079331 3R 5235842..5236289 2777..3224 2240 100 Plus
3R 32079331 3R 5235306..5235728 2355..2777 2115 100 Plus
3R 32079331 3R 5232790..5233174 174..558 1925 100 Plus
3R 32079331 3R 5233384..5233734 558..908 1755 100 Plus
3R 32079331 3R 5232553..5232726 1..174 870 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4974623..4976069 908..2354 7235 100 Plus
3R 31820162 3R 4976673..4977120 2777..3224 2240 100 Plus
3R 31820162 3R 4976137..4976559 2355..2777 2115 100 Plus
3R 31820162 3R 4973621..4974005 174..558 1925 100 Plus
3R 31820162 3R 4974215..4974565 558..908 1755 100 Plus
3R 31820162 3R 4973384..4973557 1..174 870 100 Plus
Blast to na_te.dros performed 2019-03-16 23:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 6510..6656 3175..3029 132 60.1 Minus

GH06271.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:58:57 Download gff for GH06271.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1058217..1058390 1..174 100 -> Plus
chr3R 1058455..1058838 175..558 100 -> Plus
chr3R 1059049..1059398 559..908 100 -> Plus
chr3R 1059457..1060902 909..2354 100 -> Plus
chr3R 1060970..1061392 2355..2777 99 -> Plus
chr3R 1061507..1061952 2778..3223 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:20:19 Download gff for GH06271.complete
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 1..2880 90..2969 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:09:42 Download gff for GH06271.complete
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 1..2880 90..2969 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:54:37 Download gff for GH06271.complete
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 1..2880 90..2969 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:40:36 Download gff for GH06271.complete
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 1..2880 90..2969 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:05:27 Download gff for GH06271.complete
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 1..2880 90..2969 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:00:42 Download gff for GH06271.complete
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 8..3230 1..3223 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:09:42 Download gff for GH06271.complete
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 8..3230 1..3223 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:54:37 Download gff for GH06271.complete
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 11..3233 1..3223 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:40:37 Download gff for GH06271.complete
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 8..3230 1..3223 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:05:27 Download gff for GH06271.complete
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 11..3233 1..3223 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:58:57 Download gff for GH06271.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5232553..5232726 1..174 100 -> Plus
3R 5232791..5233174 175..558 100 -> Plus
3R 5233385..5233734 559..908 100 -> Plus
3R 5233793..5235238 909..2354 100 -> Plus
3R 5235306..5235728 2355..2777 100 -> Plus
3R 5235843..5236288 2778..3223 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:58:57 Download gff for GH06271.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5232553..5232726 1..174 100 -> Plus
3R 5232791..5233174 175..558 100 -> Plus
3R 5233385..5233734 559..908 100 -> Plus
3R 5233793..5235238 909..2354 100 -> Plus
3R 5235306..5235728 2355..2777 100 -> Plus
3R 5235843..5236288 2778..3223 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:58:57 Download gff for GH06271.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5232553..5232726 1..174 100 -> Plus
3R 5232791..5233174 175..558 100 -> Plus
3R 5233385..5233734 559..908 100 -> Plus
3R 5233793..5235238 909..2354 100 -> Plus
3R 5235306..5235728 2355..2777 100 -> Plus
3R 5235843..5236288 2778..3223 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:54:37 Download gff for GH06271.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1058275..1058448 1..174 100 -> Plus
arm_3R 1058513..1058896 175..558 100 -> Plus
arm_3R 1059107..1059456 559..908 100 -> Plus
arm_3R 1059515..1060960 909..2354 100 -> Plus
arm_3R 1061028..1061450 2355..2777 100 -> Plus
arm_3R 1061565..1062010 2778..3223 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:18:09 Download gff for GH06271.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4973384..4973557 1..174 100 -> Plus
3R 4973622..4974005 175..558 100 -> Plus
3R 4974216..4974565 559..908 100 -> Plus
3R 4974624..4976069 909..2354 100 -> Plus
3R 4976137..4976559 2355..2777 100 -> Plus
3R 4976674..4977119 2778..3223 100   Plus

GH06271.pep Sequence

Translation from 89 to 2968

> GH06271.pep
MTTPTRATLEKALKSDQKLVNSATQIAKDLTAKAYDISALAEALGFALSS
PDMEERVAGTNLLSAVLIALPQDLLQERQLEFLSTFYMDRLRDHHNVMPA
IIDGIDALVHMKALPRAQIPQILQSFFEHTTCQSQTRSDRTKLFHIFQYL
TENFQDELQAMAGDFVYGLINSIDGERDPRNLDIIFSFMPEFLSTYPLLH
LAEEMFEIFACYFPIDFNPSKQDPAAITRDELSKKLTNCLVANNEFAEGT
VVLAIEKLESELLVAKLDSIELLHQAAVKFPPSVLEPHFDQIWQALKTET
FPGNDNEEILKASLKALSALLERAAHIPDISHSYQSSILGVILPHLSDVN
QRLFHPATGIALVCVSGDAPYAADKILNSFLLKLQAADASSEQRIKIYYI
VSQVYKLSALRGSLQKLDTTIRESVQDDVIASLRLIEQEEFDAKKEDLEL
QKAALSVLNESAPLLNEKQRALIYKALVQLVSHPSIDIDFTTLTVSLGAL
QPVEVQSNFIDVCVRNFEIFSTFVKRKIYTNLLPLMPQIAFTQRILDLVM
TQTFNDTTAEPVRLLALEALNKLLLLADQRFIVDVQQESNLLHKLIELGQ
KTEGLSMQSLEQIAGALSRITQQLPLSEQSAIVSEYLPGLNLSQSADLYI
TKGLLGYLHKDITLDDHFERLLTDLTQLSLNSDNEQLRVIAHHLLCSMVN
KMESNPANLRKVKKITEQLKVAIKKGDVRAVEILAWVGKGLVVAGFDEAA
DVVGDLSDLLKHPSLSTAAALGFDIIAAEYPELDLPVVKFLYKQKLFHTI
MGKMGSKLANYCVHHLKAFVYVLKATPQAVIKLNIEQLGPLLFKSLEEHN
EAQSLCIALGICEKFVAQQDTYFQGHLAHLIPSCLELSKYKAQHTMQVRI
AALQLLYDVTKYPTFVLLPHKVDVTLALAAALDDPKRLVRNTAVKARNAW
YLVGAPSPN*

GH06271.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18929-PA 1033 GF18929-PA 1..955 1..955 4410 86.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12682-PA 959 GG12682-PA 1..959 1..959 4768 95 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17730-PA 969 GH17730-PA 1..967 1..957 3572 70.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
Mms19-PB 959 CG12005-PB 1..959 1..959 4803 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22542-PA 962 GI22542-PA 1..960 1..957 3769 73 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21634-PA 962 GL21634-PA 1..958 1..955 4312 84.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26351-PA 962 GA26351-PA 1..958 1..955 4304 84 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10795-PA 959 GM10795-PA 1..959 1..959 5008 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19769-PA 959 GD19769-PA 1..959 1..959 5022 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10146-PA 962 GJ10146-PA 1..960 1..957 3774 74 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12962-PA 968 GK12962-PA 5..965 3..957 3972 77.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25455-PA 959 GE25455-PA 1..959 1..959 4765 95 Plus
Dyak\GE15095-PA 64 GE15095-PA 1..64 896..959 326 98.4 Plus

GH06271.hyp Sequence

Translation from 89 to 2968

> GH06271.hyp
MTTPTRATLEKALKSDQKLVNSATQIAKDLTAKAYDISALAEALGFALSS
PDMEERVAGTNLLSAVLIALPQDLLQERQLEFLSTFYMDRLRDHHNVMPA
IIDGIDALVHMKALPRAQIPQILQSFFEHTTCQSQTRSDRTKLFHIFQYL
TENFQDELQAMAGDFVYGLINSIDGERDPRNLDIIFSFMPEFLSTYPLLH
LAEEMFEIFACYFPIDFNPSKQDPAAITRDELSKKLTNCLVANNEFAEGT
VVLAIEKLESELLVAKLDSIELLHQAAVKFPPSVLEPHFDQIWQALKTET
FPGNDNEEILKASLKALSALLERAAHIPDISHSYQSSILGVILPHLSDVN
QRLFHPATGIALVCVSGDAPYAADKILNSFLLKLQAADASSEQRIKIYYI
VSQVYKLSALRGSLQKLDTTIRESVQDDVIASLRLIEQEEFDAKKEDLEL
QKAALSVLNESAPLLNEKQRALIYKALVQLVSHPSIDIDFTTLTVSLGAL
QPVEVQSNFIDVCVRNFEIFSTFVKRKIYTNLLPLMPQIAFTQRILDLVM
TQTFNDTTAEPVRLLALEALNKLLLLADQRFIVDVQQESNLLHKLIELGQ
KTEGLSMQSLEQIAGALSRITQQLPLSEQSAIVSEYLPGLNLSQSADLYI
TKGLLGYLHKDITLDDHFERLLTDLTQLSLNSDNEQLRVIAHHLLCSMVN
KMESNPANLRKVKKITEQLKVAIKKGDVRAVEILAWVGKGLVVAGFDEAA
DVVGDLSDLLKHPSLSTAAALGFDIIAAEYPELDLPVVKFLYKQKLFHTI
MGKMGSKLANYCVHHLKAFVYVLKATPQAVIKLNIEQLGPLLFKSLEEHN
EAQSLCIALGICEKFVAQQDTYFQGHLAHLIPSCLELSKYKAQHTMQVRI
AALQLLYDVTKYPTFVLLPHKVDVTLALAAALDDPKRLVRNTAVKARNAW
YLVGAPSPN*

GH06271.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:20:12
Subject Length Description Subject Range Query Range Score Percent Strand
Mms19-PB 959 CG12005-PB 1..959 1..959 4803 100 Plus