BDGP Sequence Production Resources |
Search the DGRC for GH06271
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 62 |
Well: | 71 |
Vector: | pOT2 |
Associated Gene/Transcript | Mms19-RB |
Protein status: | GH06271.pep: gold |
Preliminary Size: | 562 |
Sequenced Size: | 3240 |
Gene | Date | Evidence |
---|---|---|
CG12005 | 2001-01-01 | Release 2 assignment |
CG12005 | 2001-09-19 | Blastp of sequenced clone |
CG12005 | 2003-01-01 | Sim4 clustering to Release 3 |
Mms19 | 2008-04-29 | Release 5.5 accounting |
Mms19 | 2008-08-15 | Release 5.9 accounting |
Mms19 | 2008-12-18 | 5.12 accounting |
3240 bp (3240 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058300
> GH06271.complete ACAAGTCATCGGTTATCGGTTCTTAACATTTCGGCTTAACGTGCTTAAAC TCATTTAAATTTAGACACCACTCAAGCGACGGTGCCGCAATGACAACGCC CACGCGCGCCACCCTGGAAAAGGCTCTGAAAAGCGACCAGAAGCTTGTGA ATTCCGCCACACAGATAGCCAAGGATCTGACCGCCAAGGCATATGACATA TCTGCTCTGGCCGAGGCACTGGGCTTCGCCCTGTCCTCTCCGGACATGGA GGAGCGTGTGGCCGGAACCAACTTGCTCTCCGCCGTGTTGATAGCACTGC CCCAGGATCTGCTGCAAGAGCGGCAGCTGGAGTTCCTCAGCACCTTTTAC ATGGACCGCCTGCGCGACCATCACAACGTAATGCCAGCCATTATCGATGG AATCGACGCCCTGGTTCACATGAAAGCTCTACCGCGCGCCCAGATTCCCC AGATTCTGCAGTCATTCTTCGAGCACACCACCTGCCAGTCGCAGACGCGG AGCGACCGCACCAAGCTGTTCCACATTTTCCAGTACTTGACGGAAAACTT CCAGGACGAGCTGCAAGCGATGGCCGGTGACTTCGTCTACGGCCTGATCA ATTCCATTGACGGCGAGCGTGACCCCCGCAACCTTGACATCATTTTCAGC TTCATGCCCGAGTTCTTGTCAACGTATCCGCTGCTGCATTTGGCCGAAGA GATGTTTGAGATCTTTGCGTGTTACTTTCCAATCGACTTTAATCCCAGCA AGCAGGATCCAGCGGCCATAACCCGTGATGAATTGTCCAAGAAGTTGACT AACTGCCTGGTAGCCAACAACGAATTCGCTGAGGGCACAGTGGTACTGGC CATAGAAAAGCTGGAGAGTGAGTTGCTGGTTGCCAAACTGGACTCCATAG AACTGCTGCACCAAGCTGCCGTGAAGTTCCCGCCTTCCGTTCTGGAGCCG CACTTCGATCAGATATGGCAGGCTCTGAAAACAGAGACTTTTCCAGGAAA TGACAATGAGGAGATACTGAAAGCTTCCCTTAAGGCGTTGTCTGCGCTCC TGGAGAGAGCTGCTCACATACCGGATATAAGCCACAGCTACCAGAGCTCT ATTCTGGGCGTAATTCTACCGCATCTCAGCGATGTCAATCAGCGGCTCTT CCATCCTGCCACCGGGATCGCCTTAGTTTGTGTATCGGGAGATGCGCCCT ATGCAGCGGACAAAATCCTCAACAGCTTTTTGCTCAAGCTGCAGGCCGCA GATGCTAGTTCTGAGCAGCGGATCAAGATCTATTACATAGTTAGCCAAGT CTATAAGCTATCTGCGTTGCGTGGCTCTCTCCAGAAATTGGACACCACGA TACGCGAGTCTGTGCAGGACGATGTAATCGCCTCCCTACGCCTAATTGAA CAGGAAGAGTTCGATGCCAAGAAGGAGGACTTGGAGTTGCAGAAGGCGGC CCTTTCGGTGCTTAACGAAAGTGCTCCTCTTCTCAACGAGAAACAACGCG CTTTAATTTACAAAGCTCTGGTTCAGCTTGTCAGCCATCCGTCCATCGAC ATCGATTTCACCACACTGACGGTTAGCCTTGGAGCCCTGCAACCGGTGGA GGTGCAGTCAAATTTCATTGATGTTTGCGTGCGAAATTTCGAGATTTTCT CCACATTTGTCAAACGAAAGATATACACAAATTTATTGCCGCTCATGCCT CAAATAGCGTTCACTCAACGCATTCTAGATTTGGTTATGACACAGACGTT TAACGATACTACTGCAGAGCCCGTCCGTTTATTGGCTCTGGAAGCATTAA ACAAACTGCTCCTGCTAGCGGATCAGCGCTTTATCGTGGACGTGCAGCAG GAGTCCAATCTTCTTCACAAGCTCATCGAACTGGGCCAGAAGACCGAGGG TCTGTCTATGCAGTCGCTAGAACAGATTGCGGGCGCTTTAAGTCGTATCA CGCAACAGCTCCCGCTCTCCGAACAAAGCGCTATAGTAAGCGAGTATCTT CCTGGACTCAATCTGAGTCAATCGGCTGATTTGTACATTACCAAGGGCCT GCTGGGCTACCTTCATAAAGACATAACCCTGGATGACCACTTCGAGCGGC TTCTGACCGATTTGACGCAGCTTTCGCTTAATTCGGACAACGAACAGTTG CGTGTAATCGCTCACCACCTGCTCTGTAGCATGGTCAACAAGATGGAGTC GAACCCAGCTAATCTAAGGAAGGTCAAAAAAATCACGGAGCAACTGAAGG TGGCTATTAAAAAGGGCGATGTTCGGGCGGTGGAGATCCTTGCATGGGTG GGGAAGGGCCTAGTAGTCGCAGGATTCGATGAGGCTGCCGATGTTGTTGG TGATCTCTCGGATCTACTAAAACATCCCAGTTTGAGCACTGCCGCTGCCT TGGGATTCGACATCATTGCCGCCGAGTACCCAGAATTGGATTTGCCTGTC GTTAAATTCCTCTACAAGCAGAAGCTTTTCCACACTATCATGGGAAAAAT GGGCAGCAAACTTGCCAACTACTGTGTGCACCACTTGAAGGCTTTTGTCT ACGTACTGAAAGCCACGCCACAGGCGGTTATTAAGCTAAACATTGAGCAG CTCGGTCCGCTGCTTTTCAAGAGCTTGGAGGAGCACAACGAGGCGCAGTC GCTGTGCATTGCATTGGGCATCTGTGAAAAGTTTGTGGCGCAGCAGGACA CGTATTTCCAAGGGCATTTGGCCCACCTCATACCCAGCTGTCTGGAGCTG TCGAAATACAAGGCTCAGCATACCATGCAAGTGCGAATTGCGGCGCTGCA GCTGCTCTACGATGTGACAAAGTATCCTACCTTCGTCCTGTTGCCCCACA AAGTCGATGTTACTCTGGCCCTGGCCGCCGCCTTGGATGATCCCAAGCGT CTGGTGCGGAACACAGCGGTGAAGGCCAGGAATGCGTGGTACCTGGTCGG TGCGCCTAGTCCGAATTAGCAGAGAAACAACTCCGTTCTTGTTAATATTA TAATCCAATAAGCACACGCACAAATTCTTCATAATTTTCTTGTTGTTTTT ATTAGGGTGCGTTGAAGAATTTTTGATAAAGAATTTGGAAAAAGCAAAAT TATAAAGTAAACGCGAAATTGTATGCATTTTATATTACTTAGATACATTT ACGAACGTTTATGCGCAAATGTATTAAAGTTTAAGATGTTAAGAAAGAAA TGCTTATTTCTTTTCTTAAAGGCAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 1059456..1060902 | 908..2354 | 7235 | 100 | Plus |
chr3R | 27901430 | chr3R | 1061506..1061952 | 2777..3223 | 2235 | 100 | Plus |
chr3R | 27901430 | chr3R | 1060970..1061392 | 2355..2777 | 2100 | 99.8 | Plus |
chr3R | 27901430 | chr3R | 1058454..1058838 | 174..558 | 1925 | 100 | Plus |
chr3R | 27901430 | chr3R | 1059048..1059398 | 558..908 | 1755 | 100 | Plus |
chr3R | 27901430 | chr3R | 1058217..1058390 | 1..174 | 870 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 5233792..5235238 | 908..2354 | 7235 | 100 | Plus |
3R | 32079331 | 3R | 5235842..5236289 | 2777..3224 | 2240 | 100 | Plus |
3R | 32079331 | 3R | 5235306..5235728 | 2355..2777 | 2115 | 100 | Plus |
3R | 32079331 | 3R | 5232790..5233174 | 174..558 | 1925 | 100 | Plus |
3R | 32079331 | 3R | 5233384..5233734 | 558..908 | 1755 | 100 | Plus |
3R | 32079331 | 3R | 5232553..5232726 | 1..174 | 870 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 4974623..4976069 | 908..2354 | 7235 | 100 | Plus |
3R | 31820162 | 3R | 4976673..4977120 | 2777..3224 | 2240 | 100 | Plus |
3R | 31820162 | 3R | 4976137..4976559 | 2355..2777 | 2115 | 100 | Plus |
3R | 31820162 | 3R | 4973621..4974005 | 174..558 | 1925 | 100 | Plus |
3R | 31820162 | 3R | 4974215..4974565 | 558..908 | 1755 | 100 | Plus |
3R | 31820162 | 3R | 4973384..4973557 | 1..174 | 870 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
412 | 7567 | 412 412 7567bp | 6510..6656 | 3175..3029 | 132 | 60.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1058217..1058390 | 1..174 | 100 | -> | Plus |
chr3R | 1058455..1058838 | 175..558 | 100 | -> | Plus |
chr3R | 1059049..1059398 | 559..908 | 100 | -> | Plus |
chr3R | 1059457..1060902 | 909..2354 | 100 | -> | Plus |
chr3R | 1060970..1061392 | 2355..2777 | 99 | -> | Plus |
chr3R | 1061507..1061952 | 2778..3223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mms19-RB | 1..2880 | 90..2969 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mms19-RB | 1..2880 | 90..2969 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mms19-RB | 1..2880 | 90..2969 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mms19-RB | 1..2880 | 90..2969 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mms19-RB | 1..2880 | 90..2969 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mms19-RB | 8..3230 | 1..3223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mms19-RB | 8..3230 | 1..3223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mms19-RB | 11..3233 | 1..3223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mms19-RB | 8..3230 | 1..3223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mms19-RB | 11..3233 | 1..3223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5232553..5232726 | 1..174 | 100 | -> | Plus |
3R | 5232791..5233174 | 175..558 | 100 | -> | Plus |
3R | 5233385..5233734 | 559..908 | 100 | -> | Plus |
3R | 5233793..5235238 | 909..2354 | 100 | -> | Plus |
3R | 5235306..5235728 | 2355..2777 | 100 | -> | Plus |
3R | 5235843..5236288 | 2778..3223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5232553..5232726 | 1..174 | 100 | -> | Plus |
3R | 5232791..5233174 | 175..558 | 100 | -> | Plus |
3R | 5233385..5233734 | 559..908 | 100 | -> | Plus |
3R | 5233793..5235238 | 909..2354 | 100 | -> | Plus |
3R | 5235306..5235728 | 2355..2777 | 100 | -> | Plus |
3R | 5235843..5236288 | 2778..3223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5232553..5232726 | 1..174 | 100 | -> | Plus |
3R | 5232791..5233174 | 175..558 | 100 | -> | Plus |
3R | 5233385..5233734 | 559..908 | 100 | -> | Plus |
3R | 5233793..5235238 | 909..2354 | 100 | -> | Plus |
3R | 5235306..5235728 | 2355..2777 | 100 | -> | Plus |
3R | 5235843..5236288 | 2778..3223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1058275..1058448 | 1..174 | 100 | -> | Plus |
arm_3R | 1058513..1058896 | 175..558 | 100 | -> | Plus |
arm_3R | 1059107..1059456 | 559..908 | 100 | -> | Plus |
arm_3R | 1059515..1060960 | 909..2354 | 100 | -> | Plus |
arm_3R | 1061028..1061450 | 2355..2777 | 100 | -> | Plus |
arm_3R | 1061565..1062010 | 2778..3223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4973384..4973557 | 1..174 | 100 | -> | Plus |
3R | 4973622..4974005 | 175..558 | 100 | -> | Plus |
3R | 4974216..4974565 | 559..908 | 100 | -> | Plus |
3R | 4974624..4976069 | 909..2354 | 100 | -> | Plus |
3R | 4976137..4976559 | 2355..2777 | 100 | -> | Plus |
3R | 4976674..4977119 | 2778..3223 | 100 | Plus |
Translation from 89 to 2968
> GH06271.pep MTTPTRATLEKALKSDQKLVNSATQIAKDLTAKAYDISALAEALGFALSS PDMEERVAGTNLLSAVLIALPQDLLQERQLEFLSTFYMDRLRDHHNVMPA IIDGIDALVHMKALPRAQIPQILQSFFEHTTCQSQTRSDRTKLFHIFQYL TENFQDELQAMAGDFVYGLINSIDGERDPRNLDIIFSFMPEFLSTYPLLH LAEEMFEIFACYFPIDFNPSKQDPAAITRDELSKKLTNCLVANNEFAEGT VVLAIEKLESELLVAKLDSIELLHQAAVKFPPSVLEPHFDQIWQALKTET FPGNDNEEILKASLKALSALLERAAHIPDISHSYQSSILGVILPHLSDVN QRLFHPATGIALVCVSGDAPYAADKILNSFLLKLQAADASSEQRIKIYYI VSQVYKLSALRGSLQKLDTTIRESVQDDVIASLRLIEQEEFDAKKEDLEL QKAALSVLNESAPLLNEKQRALIYKALVQLVSHPSIDIDFTTLTVSLGAL QPVEVQSNFIDVCVRNFEIFSTFVKRKIYTNLLPLMPQIAFTQRILDLVM TQTFNDTTAEPVRLLALEALNKLLLLADQRFIVDVQQESNLLHKLIELGQ KTEGLSMQSLEQIAGALSRITQQLPLSEQSAIVSEYLPGLNLSQSADLYI TKGLLGYLHKDITLDDHFERLLTDLTQLSLNSDNEQLRVIAHHLLCSMVN KMESNPANLRKVKKITEQLKVAIKKGDVRAVEILAWVGKGLVVAGFDEAA DVVGDLSDLLKHPSLSTAAALGFDIIAAEYPELDLPVVKFLYKQKLFHTI MGKMGSKLANYCVHHLKAFVYVLKATPQAVIKLNIEQLGPLLFKSLEEHN EAQSLCIALGICEKFVAQQDTYFQGHLAHLIPSCLELSKYKAQHTMQVRI AALQLLYDVTKYPTFVLLPHKVDVTLALAAALDDPKRLVRNTAVKARNAW YLVGAPSPN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18929-PA | 1033 | GF18929-PA | 1..955 | 1..955 | 4410 | 86.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12682-PA | 959 | GG12682-PA | 1..959 | 1..959 | 4768 | 95 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17730-PA | 969 | GH17730-PA | 1..967 | 1..957 | 3572 | 70.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mms19-PB | 959 | CG12005-PB | 1..959 | 1..959 | 4803 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22542-PA | 962 | GI22542-PA | 1..960 | 1..957 | 3769 | 73 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21634-PA | 962 | GL21634-PA | 1..958 | 1..955 | 4312 | 84.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26351-PA | 962 | GA26351-PA | 1..958 | 1..955 | 4304 | 84 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10795-PA | 959 | GM10795-PA | 1..959 | 1..959 | 5008 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19769-PA | 959 | GD19769-PA | 1..959 | 1..959 | 5022 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10146-PA | 962 | GJ10146-PA | 1..960 | 1..957 | 3774 | 74 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12962-PA | 968 | GK12962-PA | 5..965 | 3..957 | 3972 | 77.6 | Plus |
Translation from 89 to 2968
> GH06271.hyp MTTPTRATLEKALKSDQKLVNSATQIAKDLTAKAYDISALAEALGFALSS PDMEERVAGTNLLSAVLIALPQDLLQERQLEFLSTFYMDRLRDHHNVMPA IIDGIDALVHMKALPRAQIPQILQSFFEHTTCQSQTRSDRTKLFHIFQYL TENFQDELQAMAGDFVYGLINSIDGERDPRNLDIIFSFMPEFLSTYPLLH LAEEMFEIFACYFPIDFNPSKQDPAAITRDELSKKLTNCLVANNEFAEGT VVLAIEKLESELLVAKLDSIELLHQAAVKFPPSVLEPHFDQIWQALKTET FPGNDNEEILKASLKALSALLERAAHIPDISHSYQSSILGVILPHLSDVN QRLFHPATGIALVCVSGDAPYAADKILNSFLLKLQAADASSEQRIKIYYI VSQVYKLSALRGSLQKLDTTIRESVQDDVIASLRLIEQEEFDAKKEDLEL QKAALSVLNESAPLLNEKQRALIYKALVQLVSHPSIDIDFTTLTVSLGAL QPVEVQSNFIDVCVRNFEIFSTFVKRKIYTNLLPLMPQIAFTQRILDLVM TQTFNDTTAEPVRLLALEALNKLLLLADQRFIVDVQQESNLLHKLIELGQ KTEGLSMQSLEQIAGALSRITQQLPLSEQSAIVSEYLPGLNLSQSADLYI TKGLLGYLHKDITLDDHFERLLTDLTQLSLNSDNEQLRVIAHHLLCSMVN KMESNPANLRKVKKITEQLKVAIKKGDVRAVEILAWVGKGLVVAGFDEAA DVVGDLSDLLKHPSLSTAAALGFDIIAAEYPELDLPVVKFLYKQKLFHTI MGKMGSKLANYCVHHLKAFVYVLKATPQAVIKLNIEQLGPLLFKSLEEHN EAQSLCIALGICEKFVAQQDTYFQGHLAHLIPSCLELSKYKAQHTMQVRI AALQLLYDVTKYPTFVLLPHKVDVTLALAAALDDPKRLVRNTAVKARNAW YLVGAPSPN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mms19-PB | 959 | CG12005-PB | 1..959 | 1..959 | 4803 | 100 | Plus |