Clone GH06306 Report

Search the DGRC for GH06306

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:63
Well:6
Vector:pOT2
Associated Gene/Transcriptref(2)P-RA
Protein status:GH06306.pep: gold
Preliminary Size:4056
Sequenced Size:3627

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10360 2002-01-03 Blastp of sequenced clone
ref(2)P 2008-04-29 Release 5.5 accounting
ref(2)P 2008-08-15 Release 5.9 accounting
ref(2)P 2008-12-18 5.12 accounting

Clone Sequence Records

GH06306.complete Sequence

3627 bp (3627 high quality bases) assembled on 2002-01-03

GenBank Submission: AY089494

> GH06306.complete
GAAGGTTCGAAAAAGGCTTCACGAGATTGTCAGTAGGAGGACATTTTATA
TTCGGTTATCTACACCGCGCCGATGAGCACAACGACCGCCGGGATGGGCA
TCCCCCGGACGTGCCACGCTGCCCCGGTCTGCACCAGCCCGTGAGACCCG
GGGTGCGTCCATGTGGGCGGATTCTCGAGCGGCGGAGCTGTGCGGCGCAA
GCAACTATAGAAACGCACGATATATATAAATATAGCATATTTGAGTGTTA
AAGGATATACAAGAATATTTACAGCCATGCCATAGCTTACAACCTAAATT
ATATTATTATATACATGTCTAGGTGTTAAGCATTGAATTCAATTATGAGG
CATTTTACTTACTCGTACATTACTCGATATCGATGTTGGCATTAAACTTT
AACTCTAATCGATGTGCTTGAAAAACCAGCAAATGAACGACAACAATCGC
TGAACGGTATACATATGCCAAGCCAGACAGAACTAGAACACGAAATACAC
TGAGAAAAACGAAAGTAGACTTCACAGGCCCACACTGAACCACTCACATA
CCCAGATACATATACAAGACACACATATACATACAAGAATACAAGAAAAG
ATTGCAAAATTTGTACCTAACAAAGTTCTATTTACAACATGAAACGAGAG
AGTTTGGTGAGGAGCAACCTATTGATGTGTATGACAATTAATTATACAAG
GATATAATCACACTTAACAAATATATTTGTATACAAAACATATATTATTC
ATATACAATATGGTGAATGTCATTATCTATCTAACCAGCATGGGCTCGAT
ATTCGAAGCGAATCGGGCCGTGTTTTACCAGACCATATGTATGTGTGCGA
GAAGTCAAGAAATTGTTCAGTTATCAATCGTAACAAACGTACACTTTTTA
CCCTTCGCAGTTGATTATATCATAACTACTATATATATTATTATATACGT
ATATTATCGAAGTAAGTACATTTATGTCAGAGGAACGGCACCGAAGCTCC
AGCATCTGCCGGCCAGTTCGGTCCTTGGCCATCGATTCATGAGGTGGTCG
GGTGGGCGGAGGGGATTACTGGGGGAGGTTGGAGCTTCGCGTGCCGTTAA
AAGTATGTGCCACAAACAAACTGCAGAATATCACCGGAAAACAAAAATCA
GAAAATCCAAAAAAAAAAAAAAACTACTAAGGCCAGGCAATACAACAGAA
TTGCAGCCTTGGGAAGCTGGAAAGAACATCTCCAGTTCAATATCTATATC
CCTACATCCAGTGACGACCCAGAACGAACAAGGACAAACAGGAAACGAAC
TATGGAATATATCGAGATAATCACAGGAATCACACATTCTATACTGCACA
CTCCACACGAAAGATACAAAGATACAGCGACCAGCGATTCAAGGCACCCG
ACGAGAAAAAAAAAAAAAAAAAAAAACCCAGCAACTAGTTCGCCTAGTAT
ATATACCTGCTCTCACCCAGCTGCACTTGTATACACAATCGAACGGCCGA
ACAAAAACTACGCAGTAGTCGAGAGCTCCAAATTAATAGAATCCGTCACA
TAAATTCGCCGCAACAAGTTAAACGAGAATAAAAGCGTCAGCATCGATAT
ATATACATACATATATTCAAAAGTCTGTCGAAACTACAGAATACGTTGCG
AAAATGCCGGAGAAGCTGTTGAAAATCACCTACCAGGGCGCTGGACCCCA
GAAAAAGATAAATGCATACCTGCGGATGCCCTCCCAGAATTACACCATAT
TGCGTCGCGAAATCGAGCTGTATCTTTTCCAGGAGCGCCAGTTACCCAAA
TGCGACGTAAGGACCTTCTGGATCGACGCTGATAAAGATGAAATCGAAAT
AGTCAACCAAAATGACTATGAGATTTTCCTGGCCAAGTGCGAGAGCAATA
TGCACGTTCAGGTGGCTCCACTGGCGCCCGTAGAGGAGCCAAAGGCCACC
AAGCAAGAGGGTTCTTCGGCCAACGCTGAAGCTCCTTCTGTCGACGATCC
GAGCAATTTCACCATCCACGACGCCGTTGAATGCGATGGCTGCGGCTTGG
CTCCCTTGATTGGGTTCCGCTACAAGTGCGTTCAGTGCAGCAACTATGAT
CTTTGCCAGAAATGCGAGTTGGCTCACAAGCATCCTGAGCACTTGATGCT
ACGCATGCCGACCAACAATGGACCCGGTATGGTCGATGCCTGGTTCACAG
GTCCAGGATTGGGACGCCGCAGTGGCCGGCGCTCCAGGGGACATTGCCCG
TTTCAGGAGACGAACCAGGCAGATCCTGCTGGCGAACCCGCAAGGGATAG
TCGCCGTGAACGGCGTCAGGCCCGCCGCCATGCCGGAGTCTTGACTCAGT
TTGTCGAGATGATGACCAACTTGCCGCTGAACACAACAACGGCCACGGCA
CCAGCCGAACCGCAGAAACCGAAGGCTGCAGAACAAACTGAAAGTCCTCC
ACAAGCTGAGCCCACTGTTACCGCTGAAAAGGCAGCTGAATCCGAGGCCA
AACCAACTGAGCCGAAGAAGGTTAACACTGATCAAAGTGTCCCTAGAACC
GAAGATCCAGTGACGACTCCACGTTCCACTCAGCCAACTACTCCAGTGAT
TAATCTGGATAACATTTCGCAGATTGTGCCACCCGAGTACATGAGTGCTG
GCATCGAAATCCTTAATAACTTCAGCGAAATGTTTTCCAAGATTATCGAT
ACCACTGAGGGCGGTGATTCGGGAATTTTTGCGCCCTCAACGACTCCCAG
TGCTGAGAATAAGAAACCAGAAGAGCAGGGTCAATCCAGTGGCCAGTCGG
GGGCATCCTCGGCCAACCAGTCAGCTGTTCCCTCTGCCGCTCCATCGGCT
AATCAGTCTAATGTCCCATCTGCTAACCAGTCGGCCACTCCATCAATTTC
TGGTTCGATCCCTGATGCTCAGCTTGAGACAGAGCCCCTGAATCCTAAGC
CATCGGAAACCACCACCGAAACAGAGCAGGAAAGACGCCGTTCAGACAGC
TTGGATCCAGAGTGGCAGCTTATTGACAATGCATACTCTGCAAACAATAG
TAACTTGATCAATCTGGACACAACCAATCCCACTGCTGCTCCTCAGGAGC
CGGTGCGTGATTTTGGTCAGCTGGGCGAACTATTGCGTCAGCACATGAAT
GAGGAGGCTCGCGTGGAGCAGGCTTCGGCCAACACCCAGACTGCTCAAGT
TGATACGGTGAGTACATCGACCTCGACCACATCGGTGACCACCAATAGCG
TCGGCACCTCCCCAGCAGCTCCCGACGACAAGCGCACGGTCCCCGTCTAC
CACACTGATGAAAGCATCAATAAATCGATCCATGCCATGATGGCCATGGG
TTTCAGCAACGAGGGCGCCTGGCTAACCCAGCTCCTAGAGTCGGTTCAGG
GCAATATCTCAGCTGCCTTGGACGTAATGAACGTATCGCAGAACCGCAAC
TAAATATTCATATTCAATATCGATATATCTACAATGTATCTTCAATATCT
ATAGAACCCAATGAAAAAGGGATTTTACTTTATCGTATCAGTTTACTACG
TAGCTTAGTTTTTCTGTGGTGCTAGATTTATCTCGTAGCCAAAATAAATG
TGAAAATAGAAAAAAAAAAAAAAAAAA

GH06306.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
ref(2)P.a 2481 ref(2)P.a 210..2392 1428..3610 10915 100 Plus
ref(2)P-RA 2485 ref(2)P-RA 210..2392 1428..3610 10915 100 Plus
ref(2)P-RB 2223 ref(2)P-RB 1..2134 1477..3610 10670 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:39:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19542161..19543643 1825..3307 7415 100 Plus
chr2L 23010047 chr2L 1012303..1013715 1411..1 6910 99.4 Minus
chr2L 23010047 chr2L 19541133..19541530 1428..1825 1990 100 Plus
chr2L 23010047 chr2L 19543698..19544000 3307..3609 1515 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:34:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19543619..19545101 1825..3307 7415 100 Plus
2L 23513712 2L 1012404..1013814 1411..1 7055 100 Minus
2L 23513712 2L 19542591..19542988 1428..1825 1990 100 Plus
2L 23513712 2L 19545156..19545459 3307..3610 1520 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19543619..19545101 1825..3307 7415 100 Plus
2L 23513712 2L 1012404..1013814 1411..1 7055 100 Minus
2L 23513712 2L 19542591..19542988 1428..1825 1990 100 Plus
2L 23513712 2L 19545156..19545459 3307..3610 1520 100 Plus
Blast to na_te.dros performed 2019-03-16 14:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 5501..5843 424..760 198 54.9 Plus

GH06306.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:40:18 Download gff for GH06306.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19541124..19541530 1421..1825 99 -> Plus
chr2L 19542162..19543643 1826..3307 100 -> Plus
chr2L 19543699..19544000 3308..3609 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:25:14 Download gff for GH06306.complete
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RB 1..1800 1654..3453 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:57:04 Download gff for GH06306.complete
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RB 1..1800 1654..3453 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:35:02 Download gff for GH06306.complete
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RA 1..1800 1654..3453 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:21:53 Download gff for GH06306.complete
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RB 1..1800 1654..3453 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:30:50 Download gff for GH06306.complete
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RA 1..1800 1654..3453 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:25:14 Download gff for GH06306.complete
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RA 137..2327 1421..3609 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:57:04 Download gff for GH06306.complete
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RA 137..2327 1421..3609 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:35:02 Download gff for GH06306.complete
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RA 115..2305 1421..3609 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:21:53 Download gff for GH06306.complete
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RA 137..2327 1421..3609 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:50 Download gff for GH06306.complete
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RA 115..2305 1421..3609 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:40:18 Download gff for GH06306.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19542588..19542988 1427..1825 99 -> Plus
2L 19543620..19545101 1826..3307 100 -> Plus
2L 19545157..19545458 3308..3609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:40:18 Download gff for GH06306.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19542588..19542988 1427..1825 99 -> Plus
2L 19543620..19545101 1826..3307 100 -> Plus
2L 19545157..19545458 3308..3609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:40:18 Download gff for GH06306.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19542588..19542988 1427..1825 99 -> Plus
2L 19543620..19545101 1826..3307 100 -> Plus
2L 19545157..19545458 3308..3609 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:35:02 Download gff for GH06306.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19542588..19542988 1427..1825 99 -> Plus
arm_2L 19543620..19545101 1826..3307 100 -> Plus
arm_2L 19545157..19545458 3308..3609 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:56:42 Download gff for GH06306.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19542588..19542988 1427..1825 99 -> Plus
2L 19543620..19545101 1826..3307 100 -> Plus
2L 19545157..19545458 3308..3609 100   Plus

GH06306.pep Sequence

Translation from 1653 to 3452

> GH06306.pep
MPEKLLKITYQGAGPQKKINAYLRMPSQNYTILRREIELYLFQERQLPKC
DVRTFWIDADKDEIEIVNQNDYEIFLAKCESNMHVQVAPLAPVEEPKATK
QEGSSANAEAPSVDDPSNFTIHDAVECDGCGLAPLIGFRYKCVQCSNYDL
CQKCELAHKHPEHLMLRMPTNNGPGMVDAWFTGPGLGRRSGRRSRGHCPF
QETNQADPAGEPARDSRRERRQARRHAGVLTQFVEMMTNLPLNTTTATAP
AEPQKPKAAEQTESPPQAEPTVTAEKAAESEAKPTEPKKVNTDQSVPRTE
DPVTTPRSTQPTTPVINLDNISQIVPPEYMSAGIEILNNFSEMFSKIIDT
TEGGDSGIFAPSTTPSAENKKPEEQGQSSGQSGASSANQSAVPSAAPSAN
QSNVPSANQSATPSISGSIPDAQLETEPLNPKPSETTTETEQERRRSDSL
DPEWQLIDNAYSANNSNLINLDTTNPTAAPQEPVRDFGQLGELLRQHMNE
EARVEQASANTQTAQVDTVSTSTSTTSVTTNSVGTSPAAPDDKRTVPVYH
TDESINKSIHAMMAMGFSNEGAWLTQLLESVQGNISAALDVMNVSQNRN*

GH06306.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14248-PA 598 GF14248-PA 1..598 1..599 1802 60.6 Plus
Dana\GF22430-PA 440 GF22430-PA 141..440 246..599 651 48.8 Plus
Dana\GF22430-PA 440 GF22430-PA 1..102 25..141 367 61 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\ref(2)P-PA 594 GG21195-PA 1..594 1..599 2433 85.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13424-PA 681 GH13424-PA 1..677 1..596 1048 41 Plus
Dgri\GH12515-PA 461 GH12515-PA 17..215 196..357 206 35.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
ref(2)P-PB 599 CG10360-PB 1..599 1..599 3119 100 Plus
ref(2)P-PA 599 CG10360-PA 1..599 1..599 3119 100 Plus
Muc68D-PB 1514 CG6004-PB 521..904 211..582 164 21.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17660-PA 628 GI17660-PA 1..624 1..596 1289 49.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26088-PA 587 GL26088-PA 1..587 1..599 1662 60.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10271-PA 587 GA10271-PA 1..587 1..599 1661 60.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17364-PA 599 GM17364-PA 1..599 1..599 2649 93 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ref(2)P-PA 599 GD24222-PA 1..599 1..599 2670 93.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18227-PA 653 GJ18227-PA 1..650 1..597 1357 48.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24659-PA 350 GK24659-PA 1..140 1..152 486 60.5 Plus
Dwil\GK24381-PA 623 GK24381-PA 468..619 450..596 417 67.1 Plus
Dwil\GK24659-PA 350 GK24659-PA 231..330 59..172 360 56.1 Plus
Dwil\GK24659-PA 350 GK24659-PA 143..228 59..152 275 54.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\ref(2)P-PA 605 GE13269-PA 1..605 1..599 2580 86.8 Plus

GH06306.hyp Sequence

Translation from 1653 to 3452

> GH06306.hyp
MPEKLLKITYQGAGPQKKINAYLRMPSQNYTILRREIELYLFQERQLPKC
DVRTFWIDADKDEIEIVNQNDYEIFLAKCESNMHVQVAPLAPVEEPKATK
QEGSSANAEAPSVDDPSNFTIHDAVECDGCGLAPLIGFRYKCVQCSNYDL
CQKCELAHKHPEHLMLRMPTNNGPGMVDAWFTGPGLGRRSGRRSRGHCPF
QETNQADPAGEPARDSRRERRQARRHAGVLTQFVEMMTNLPLNTTTATAP
AEPQKPKAAEQTESPPQAEPTVTAEKAAESEAKPTEPKKVNTDQSVPRTE
DPVTTPRSTQPTTPVINLDNISQIVPPEYMSAGIEILNNFSEMFSKIIDT
TEGGDSGIFAPSTTPSAENKKPEEQGQSSGQSGASSANQSAVPSAAPSAN
QSNVPSANQSATPSISGSIPDAQLETEPLNPKPSETTTETEQERRRSDSL
DPEWQLIDNAYSANNSNLINLDTTNPTAAPQEPVRDFGQLGELLRQHMNE
EARVEQASANTQTAQVDTVSTSTSTTSVTTNSVGTSPAAPDDKRTVPVYH
TDESINKSIHAMMAMGFSNEGAWLTQLLESVQGNISAALDVMNVSQNRN*

GH06306.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
ref(2)P-PB 599 CG10360-PB 1..599 1..599 3119 100 Plus
ref(2)P-PA 599 CG10360-PA 1..599 1..599 3119 100 Plus
Muc68D-PB 1514 CG6004-PB 521..904 211..582 164 21.7 Plus