Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH06351.complete Sequence
1205 bp (1205 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058301
> GH06351.complete
AAAACACTAAAGAAACAAGAGGCTTTCAAGGGGACCAGGAGCTCGGGCTT
ATGGGGAGGCGCACCTGGTGAGATGTACAGGTCTCTGCTGCACAACGTTT
CACTCAAGGCGACATCAAGGATTATCAGGCGCAGCGTGAGCAGCCAGGCA
AAAGGAGCCAGCGGAAAGCGCAAACAAAAAGCGAAGGAGATGGAGTCGAG
CCACGATCGGAATAGACGCTGGACGTCATTGGGGAATCAGGCTGAGGGTC
GAGACCCGCACAAGTGCTCCTCCTTCAAGGTTGTCTCATATAACATCCTG
GCCCAGGATCTGCTTCTGGAGCACCTCTTCCTGTACGTGGGAATCCCGCA
TGAGTTCCTCAGCTGGCAACGCCGCCAGCAGAACCTTCTCAGGGAACTGC
TCAAACTGGATCCGGACATACTGTGCCTGCAGGAGATGCAGTTCGACCAC
CTTCCAGTGCTCGTCCAACGACTGCGTATGGGCAACGGCAAGAAGTTGGC
TTATGTGTACAAAAAGAAGACCGGCTGTCGAACGGACGGATGCGCTATTG
TCTACGACTCCTCAAAGTTTGAGTTGCTAGACCACCAAGCAGTGGAGCTG
TACGACCAGGCGGTGGCTCTACTCAATCGCGACAATGTGGCCTTGTTTGC
CAGGTTCCGATTCAAAAAGCAGCAGGAGCAGCAGAAGGAATTCGTGGTCG
CCACCACGCACTTGCTGTTCAACACGAAACGGAGCGATGTCCGTTGCGCC
CAGGTGGAAAGAATTTTGGAGGAGCTGCAGTCGTTCTCCACCGACACACC
TATCGTCCTGACTGGTGACTTTAACAGTCTGCCCGACTCCTCGCCTATTG
AATTCCTCGTTGGCAAGAATGGGGATGTGGATTCCACAGCTTGCCCAGAA
CCCCTGCATTTCGAGATCATCGATTCGGGCGAAGGTACTGCCTCCACATA
CCAGAACGAATGGGTTATCGTGGACTACATCCTGCGCTCGCTAGGATCGC
GGAGCAGGCACAAGCTCTTGCCTCTCAGCGTCTACTCACTGCCCTCAATC
AACCGGTGCATCGGGGCGGGACAGATCCCCAATTACCGTCTGGGGTCGGA
TCACTACGCCTTGGGTGCAGTATTCACCGTTGTCTAGTATTTAATCTCTT
CATGCTTTCTTGGACTCATCAATAAAGGTACGAAATGAAAAAAAAAAAAA
AAAAA
GH06351.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:24:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
angel-RA | 1235 | angel-RA | 49..1235 | 1..1187 | 5935 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 19580220..19581406 | 1..1187 | 5875 | 99.7 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:34:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23694046..23695234 | 1..1189 | 5945 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 23695245..23696433 | 1..1189 | 5945 | 100 | Plus |
Blast to na_te.dros performed 2019-03-15 20:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3273..3422 | 436..596 | 120 | 58.4 | Plus |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 5557..5620 | 436..499 | 113 | 64.1 | Plus |
GH06351.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:21:46 Download gff for
GH06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 19580220..19581406 | 1..1187 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:20:33 Download gff for
GH06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
angel-RA | 1..1065 | 73..1137 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:09:28 Download gff for
GH06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
angel-RA | 1..1065 | 73..1137 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:06:36 Download gff for
GH06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
angel-RA | 1..1065 | 73..1137 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:40:25 Download gff for
GH06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
angel-RA | 1..1065 | 73..1137 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:34:39 Download gff for
GH06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
angel-RA | 1..1065 | 73..1137 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:00:24 Download gff for
GH06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
angel-RA | 49..1235 | 1..1187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:09:28 Download gff for
GH06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
angel-RA | 49..1235 | 1..1187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:06:36 Download gff for
GH06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
angel-RA | 44..1230 | 1..1187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:40:25 Download gff for
GH06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
angel-RA | 49..1235 | 1..1187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:34:39 Download gff for
GH06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
angel-RA | 44..1230 | 1..1187 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:21:46 Download gff for
GH06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23694046..23695232 | 1..1187 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:21:46 Download gff for
GH06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23694046..23695232 | 1..1187 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:21:46 Download gff for
GH06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23694046..23695232 | 1..1187 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:06:36 Download gff for
GH06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19581569..19582755 | 1..1187 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:17:54 Download gff for
GH06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23695263..23696449 | 1..1187 | 100 | | Plus |
GH06351.hyp Sequence
Translation from 1 to 1136
> GH06351.hyp
KTLKKQEAFKGTRSSGLWGGAPGEMYRSLLHNVSLKATSRIIRRSVSSQA
KGASGKRKQKAKEMESSHDRNRRWTSLGNQAEGRDPHKCSSFKVVSYNIL
AQDLLLEHLFLYVGIPHEFLSWQRRQQNLLRELLKLDPDILCLQEMQFDH
LPVLVQRLRMGNGKKLAYVYKKKTGCRTDGCAIVYDSSKFELLDHQAVEL
YDQAVALLNRDNVALFARFRFKKQQEQQKEFVVATTHLLFNTKRSDVRCA
QVERILEELQSFSTDTPIVLTGDFNSLPDSSPIEFLVGKNGDVDSTACPE
PLHFEIIDSGEGTASTYQNEWVIVDYILRSLGSRSRHKLLPLSVYSLPSI
NRCIGAGQIPNYRLGSDHYALGAVFTVV*
GH06351.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
angel-PA | 354 | CG12273-PA | 1..354 | 25..378 | 1828 | 100 | Plus |
cu-PH | 419 | CG31299-PH | 82..387 | 86..378 | 209 | 26.3 | Plus |
cu-PF | 441 | CG31299-PF | 104..409 | 86..378 | 209 | 26.3 | Plus |
cu-PE | 446 | CG31299-PE | 109..414 | 86..378 | 209 | 26.3 | Plus |
cu-PC | 449 | CG31299-PC | 112..417 | 86..378 | 209 | 26.3 | Plus |
GH06351.pep Sequence
Translation from 72 to 1136
> GH06351.pep
MYRSLLHNVSLKATSRIIRRSVSSQAKGASGKRKQKAKEMESSHDRNRRW
TSLGNQAEGRDPHKCSSFKVVSYNILAQDLLLEHLFLYVGIPHEFLSWQR
RQQNLLRELLKLDPDILCLQEMQFDHLPVLVQRLRMGNGKKLAYVYKKKT
GCRTDGCAIVYDSSKFELLDHQAVELYDQAVALLNRDNVALFARFRFKKQ
QEQQKEFVVATTHLLFNTKRSDVRCAQVERILEELQSFSTDTPIVLTGDF
NSLPDSSPIEFLVGKNGDVDSTACPEPLHFEIIDSGEGTASTYQNEWVIV
DYILRSLGSRSRHKLLPLSVYSLPSINRCIGAGQIPNYRLGSDHYALGAV
FTVV*
GH06351.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
angel-PA | 354 | CG12273-PA | 1..354 | 1..354 | 1828 | 100 | Plus |
cu-PH | 419 | CG31299-PH | 82..387 | 62..354 | 209 | 26.3 | Plus |
cu-PF | 441 | CG31299-PF | 104..409 | 62..354 | 209 | 26.3 | Plus |
cu-PE | 446 | CG31299-PE | 109..414 | 62..354 | 209 | 26.3 | Plus |
cu-PC | 449 | CG31299-PC | 112..417 | 62..354 | 209 | 26.3 | Plus |
cu-PG | 481 | CG31299-PG | 144..449 | 62..354 | 209 | 26.3 | Plus |
cu-PD | 642 | CG31299-PD | 305..610 | 62..354 | 209 | 26.3 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA11525-PA | 359 | GA11525-PA | 1..359 | 1..354 | 937 | 53.1 | Plus |
Dpse\GA16160-PE | 451 | GA16160-PE | 121..421 | 67..354 | 210 | 27.4 | Plus |
Dpse\GA16160-PC | 448 | GA16160-PC | 118..418 | 67..354 | 209 | 27.4 | Plus |
Dpse\GA16160-PD | 668 | GA16160-PD | 338..638 | 67..354 | 209 | 27.4 | Plus |
Dpse\GA16037-PC | 551 | GA16037-PC | 175..425 | 48..262 | 190 | 27.3 | Plus |