Clone GH06351 Report

Search the DGRC for GH06351

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:63
Well:51
Vector:pOT2
Associated Gene/Transcriptangel-RA
Protein status:GH06351.pep: gold
Preliminary Size:1134
Sequenced Size:1205

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12273 2001-01-01 Release 2 assignment
CG12273 2001-09-19 Blastp of sequenced clone
CG12273 2003-01-01 Sim4 clustering to Release 3
angel 2008-04-29 Release 5.5 accounting
angel 2008-08-15 Release 5.9 accounting
angel 2008-12-18 5.12 accounting

Clone Sequence Records

GH06351.complete Sequence

1205 bp (1205 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058301

> GH06351.complete
AAAACACTAAAGAAACAAGAGGCTTTCAAGGGGACCAGGAGCTCGGGCTT
ATGGGGAGGCGCACCTGGTGAGATGTACAGGTCTCTGCTGCACAACGTTT
CACTCAAGGCGACATCAAGGATTATCAGGCGCAGCGTGAGCAGCCAGGCA
AAAGGAGCCAGCGGAAAGCGCAAACAAAAAGCGAAGGAGATGGAGTCGAG
CCACGATCGGAATAGACGCTGGACGTCATTGGGGAATCAGGCTGAGGGTC
GAGACCCGCACAAGTGCTCCTCCTTCAAGGTTGTCTCATATAACATCCTG
GCCCAGGATCTGCTTCTGGAGCACCTCTTCCTGTACGTGGGAATCCCGCA
TGAGTTCCTCAGCTGGCAACGCCGCCAGCAGAACCTTCTCAGGGAACTGC
TCAAACTGGATCCGGACATACTGTGCCTGCAGGAGATGCAGTTCGACCAC
CTTCCAGTGCTCGTCCAACGACTGCGTATGGGCAACGGCAAGAAGTTGGC
TTATGTGTACAAAAAGAAGACCGGCTGTCGAACGGACGGATGCGCTATTG
TCTACGACTCCTCAAAGTTTGAGTTGCTAGACCACCAAGCAGTGGAGCTG
TACGACCAGGCGGTGGCTCTACTCAATCGCGACAATGTGGCCTTGTTTGC
CAGGTTCCGATTCAAAAAGCAGCAGGAGCAGCAGAAGGAATTCGTGGTCG
CCACCACGCACTTGCTGTTCAACACGAAACGGAGCGATGTCCGTTGCGCC
CAGGTGGAAAGAATTTTGGAGGAGCTGCAGTCGTTCTCCACCGACACACC
TATCGTCCTGACTGGTGACTTTAACAGTCTGCCCGACTCCTCGCCTATTG
AATTCCTCGTTGGCAAGAATGGGGATGTGGATTCCACAGCTTGCCCAGAA
CCCCTGCATTTCGAGATCATCGATTCGGGCGAAGGTACTGCCTCCACATA
CCAGAACGAATGGGTTATCGTGGACTACATCCTGCGCTCGCTAGGATCGC
GGAGCAGGCACAAGCTCTTGCCTCTCAGCGTCTACTCACTGCCCTCAATC
AACCGGTGCATCGGGGCGGGACAGATCCCCAATTACCGTCTGGGGTCGGA
TCACTACGCCTTGGGTGCAGTATTCACCGTTGTCTAGTATTTAATCTCTT
CATGCTTTCTTGGACTCATCAATAAAGGTACGAAATGAAAAAAAAAAAAA
AAAAA

GH06351.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
angel-RA 1235 angel-RA 49..1235 1..1187 5935 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19580220..19581406 1..1187 5875 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:34:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23694046..23695234 1..1189 5945 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23695245..23696433 1..1189 5945 100 Plus
Blast to na_te.dros performed 2019-03-15 20:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 3273..3422 436..596 120 58.4 Plus
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 5557..5620 436..499 113 64.1 Plus

GH06351.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:21:46 Download gff for GH06351.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19580220..19581406 1..1187 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:20:33 Download gff for GH06351.complete
Subject Subject Range Query Range Percent Splice Strand
angel-RA 1..1065 73..1137 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:09:28 Download gff for GH06351.complete
Subject Subject Range Query Range Percent Splice Strand
angel-RA 1..1065 73..1137 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:06:36 Download gff for GH06351.complete
Subject Subject Range Query Range Percent Splice Strand
angel-RA 1..1065 73..1137 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:40:25 Download gff for GH06351.complete
Subject Subject Range Query Range Percent Splice Strand
angel-RA 1..1065 73..1137 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:34:39 Download gff for GH06351.complete
Subject Subject Range Query Range Percent Splice Strand
angel-RA 1..1065 73..1137 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:00:24 Download gff for GH06351.complete
Subject Subject Range Query Range Percent Splice Strand
angel-RA 49..1235 1..1187 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:09:28 Download gff for GH06351.complete
Subject Subject Range Query Range Percent Splice Strand
angel-RA 49..1235 1..1187 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:06:36 Download gff for GH06351.complete
Subject Subject Range Query Range Percent Splice Strand
angel-RA 44..1230 1..1187 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:40:25 Download gff for GH06351.complete
Subject Subject Range Query Range Percent Splice Strand
angel-RA 49..1235 1..1187 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:34:39 Download gff for GH06351.complete
Subject Subject Range Query Range Percent Splice Strand
angel-RA 44..1230 1..1187 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:21:46 Download gff for GH06351.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23694046..23695232 1..1187 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:21:46 Download gff for GH06351.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23694046..23695232 1..1187 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:21:46 Download gff for GH06351.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23694046..23695232 1..1187 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:06:36 Download gff for GH06351.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19581569..19582755 1..1187 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:17:54 Download gff for GH06351.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23695263..23696449 1..1187 100   Plus

GH06351.hyp Sequence

Translation from 1 to 1136

> GH06351.hyp
KTLKKQEAFKGTRSSGLWGGAPGEMYRSLLHNVSLKATSRIIRRSVSSQA
KGASGKRKQKAKEMESSHDRNRRWTSLGNQAEGRDPHKCSSFKVVSYNIL
AQDLLLEHLFLYVGIPHEFLSWQRRQQNLLRELLKLDPDILCLQEMQFDH
LPVLVQRLRMGNGKKLAYVYKKKTGCRTDGCAIVYDSSKFELLDHQAVEL
YDQAVALLNRDNVALFARFRFKKQQEQQKEFVVATTHLLFNTKRSDVRCA
QVERILEELQSFSTDTPIVLTGDFNSLPDSSPIEFLVGKNGDVDSTACPE
PLHFEIIDSGEGTASTYQNEWVIVDYILRSLGSRSRHKLLPLSVYSLPSI
NRCIGAGQIPNYRLGSDHYALGAVFTVV*

GH06351.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
angel-PA 354 CG12273-PA 1..354 25..378 1828 100 Plus
cu-PH 419 CG31299-PH 82..387 86..378 209 26.3 Plus
cu-PF 441 CG31299-PF 104..409 86..378 209 26.3 Plus
cu-PE 446 CG31299-PE 109..414 86..378 209 26.3 Plus
cu-PC 449 CG31299-PC 112..417 86..378 209 26.3 Plus

GH06351.pep Sequence

Translation from 72 to 1136

> GH06351.pep
MYRSLLHNVSLKATSRIIRRSVSSQAKGASGKRKQKAKEMESSHDRNRRW
TSLGNQAEGRDPHKCSSFKVVSYNILAQDLLLEHLFLYVGIPHEFLSWQR
RQQNLLRELLKLDPDILCLQEMQFDHLPVLVQRLRMGNGKKLAYVYKKKT
GCRTDGCAIVYDSSKFELLDHQAVELYDQAVALLNRDNVALFARFRFKKQ
QEQQKEFVVATTHLLFNTKRSDVRCAQVERILEELQSFSTDTPIVLTGDF
NSLPDSSPIEFLVGKNGDVDSTACPEPLHFEIIDSGEGTASTYQNEWVIV
DYILRSLGSRSRHKLLPLSVYSLPSINRCIGAGQIPNYRLGSDHYALGAV
FTVV*

GH06351.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
angel-PA 354 CG12273-PA 1..354 1..354 1828 100 Plus
cu-PH 419 CG31299-PH 82..387 62..354 209 26.3 Plus
cu-PF 441 CG31299-PF 104..409 62..354 209 26.3 Plus
cu-PE 446 CG31299-PE 109..414 62..354 209 26.3 Plus
cu-PC 449 CG31299-PC 112..417 62..354 209 26.3 Plus
cu-PG 481 CG31299-PG 144..449 62..354 209 26.3 Plus
cu-PD 642 CG31299-PD 305..610 62..354 209 26.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11525-PA 359 GA11525-PA 1..359 1..354 937 53.1 Plus
Dpse\GA16160-PE 451 GA16160-PE 121..421 67..354 210 27.4 Plus
Dpse\GA16160-PC 448 GA16160-PC 118..418 67..354 209 27.4 Plus
Dpse\GA16160-PD 668 GA16160-PD 338..638 67..354 209 27.4 Plus
Dpse\GA16037-PC 551 GA16037-PC 175..425 48..262 190 27.3 Plus