Clone GH06373 Report

Search the DGRC for GH06373

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:63
Well:73
Vector:pOT2
Associated Gene/TranscriptJupiter-RA
Protein status:GH06373.pep: gold
Sequenced Size:694

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31363 2002-11-11 Blastp of sequenced clone
Jupiter 2008-04-29 Release 5.5 accounting
Jupiter 2008-08-15 Release 5.9 accounting
Jupiter 2008-12-18 5.12 accounting

Clone Sequence Records

GH06373.complete Sequence

694 bp (694 high quality bases) assembled on 2002-11-11

GenBank Submission: BT001398

> GH06373.complete
TACAGCGGCAAAATGATCTCTAACTTTGATTGCACCGATAATCAGGCCAG
CAGCAAGGTGCTGAGGCCCCCGGGCGGCGGATCGAGCGACATCTTTGGAT
CGGAGATGCCGCAGACCCCCAGGAACGTGAAGAATCGCATGGCGTCCAAC
ATATTCGCTGCCGAGAAAGATAATGGAGTGAAAAACAACGGTGATGCACC
ACGTCGCGGCCAGAAGACCGTCGACTCCCACTCTCGGCTGTTTGGGGAGC
CCACCCGCCCGATCACCCCCGGCAAGAACCACATGAAGAGCAGCATTCCC
TTTGGTCAGAACACAGAGGCCGTTGCCGCCCAGAAGCTGCTGACCACCAA
TGGCCACTACAACGGCAAGAGCGGATCGGTGTCCTCGGCCTCGTCTTCGG
TGTCGTCCTCCACCGAGAACCTCAAGATGAACAGTGGCTCGAGATCAGTC
TTCCGCAATATGAGCAAGGGCAACCCCGTCACAGGCGAGGGCTACAAGGT
CGTAGCCAACGAGTATTCCCAGCGCCAGGAGTCGTCCAATGGCGGCACTC
CGGTGATCAACAAGAACCGCATTCCCCCAGGCGGCTACTCGTCGGGCCTG
TGGTAATGACAGCCGGAATTGCTCAGATCCCAGCACAAGCAATTGAGGAG
CCGATGGCGGGACGAGACACTATAAGAAAAAAAAAAAAAAAAAA

GH06373.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
Jupiter-RA 1568 Jupiter-RA 176..863 1..688 3440 100 Plus
Jupiter.d 1978 Jupiter.d 175..640 1..466 2330 100 Plus
Jupiter-RH 1649 Jupiter-RH 464..722 190..448 1295 100 Plus
Jupiter.d 1978 Jupiter.d 1052..1273 467..688 1110 100 Plus
Jupiter-RH 1649 Jupiter-RH 723..944 467..688 1110 100 Plus
Jupiter-RH 1649 Jupiter-RH 242..431 1..190 950 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7417858..7418116 448..190 1295 100 Minus
chr3R 27901430 chr3R 7416589..7416798 676..467 1050 100 Minus
chr3R 27901430 chr3R 7419122..7419261 192..53 685 99.3 Minus
chr3R 27901430 chr3R 7445224..7445280 57..1 285 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:34:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11592367..11592625 448..190 1295 100 Minus
3R 32079331 3R 11591086..11591307 688..467 1110 100 Minus
3R 32079331 3R 11593631..11593770 192..53 685 99.3 Minus
3R 32079331 3R 11619703..11619759 57..1 285 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11333198..11333456 448..190 1295 100 Minus
3R 31820162 3R 11331917..11332138 688..467 1110 100 Minus
3R 31820162 3R 11334462..11334601 192..53 685 99.2 Minus
3R 31820162 3R 11360534..11360590 57..1 285 100 Minus
Blast to na_te.dros performed on 2019-03-16 00:01:34 has no hits.

GH06373.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:02:31 Download gff for GH06373.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7416589..7416798 467..676 100 <- Minus
chr3R 7417486..7417503 449..466 100 <- Minus
chr3R 7417858..7418115 191..448 100 <- Minus
chr3R 7419124..7419257 57..190 100 <- Minus
chr3R 7445225..7445280 1..56 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:35:34 Download gff for GH06373.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RA 1..594 13..606 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:50:00 Download gff for GH06373.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RA 1..594 13..606 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:10:30 Download gff for GH06373.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RA 1..594 13..606 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:32:08 Download gff for GH06373.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RA 1..594 13..606 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:55:40 Download gff for GH06373.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RA 1..594 13..606 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:35:29 Download gff for GH06373.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RA 176..851 1..676 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:50:00 Download gff for GH06373.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RA 176..851 1..676 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:10:30 Download gff for GH06373.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RA 148..823 1..676 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:32:08 Download gff for GH06373.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RA 176..851 1..676 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:55:40 Download gff for GH06373.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RA 148..823 1..676 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:02:31 Download gff for GH06373.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11591098..11591307 467..676 100 <- Minus
3R 11591995..11592012 449..466 100 <- Minus
3R 11592367..11592624 191..448 100 <- Minus
3R 11593633..11593766 57..190 100 <- Minus
3R 11619704..11619759 1..56 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:02:31 Download gff for GH06373.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11591098..11591307 467..676 100 <- Minus
3R 11591995..11592012 449..466 100 <- Minus
3R 11592367..11592624 191..448 100 <- Minus
3R 11593633..11593766 57..190 100 <- Minus
3R 11619704..11619759 1..56 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:02:31 Download gff for GH06373.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11591098..11591307 467..676 100 <- Minus
3R 11591995..11592012 449..466 100 <- Minus
3R 11592367..11592624 191..448 100 <- Minus
3R 11593633..11593766 57..190 100 <- Minus
3R 11619704..11619759 1..56 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:10:30 Download gff for GH06373.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7416820..7417029 467..676 100 <- Minus
arm_3R 7417717..7417734 449..466 100 <- Minus
arm_3R 7418089..7418346 191..448 100 <- Minus
arm_3R 7419355..7419488 57..190 100 <- Minus
arm_3R 7445426..7445481 1..56 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:11:52 Download gff for GH06373.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11333198..11333455 191..448 100 <- Minus
3R 11331929..11332138 467..676 100 <- Minus
3R 11332826..11332843 449..466 100 <- Minus
3R 11334464..11334597 57..190 100 <- Minus
3R 11360535..11360590 1..56 100   Minus

GH06373.hyp Sequence

Translation from 1 to 605

> GH06373.hyp
YSGKMISNFDCTDNQASSKVLRPPGGGSSDIFGSEMPQTPRNVKNRMASN
IFAAEKDNGVKNNGDAPRRGQKTVDSHSRLFGEPTRPITPGKNHMKSSIP
FGQNTEAVAAQKLLTTNGHYNGKSGSVSSASSSVSSSTENLKMNSGSRSV
FRNMSKGNPVTGEGYKVVANEYSQRQESSNGGTPVINKNRIPPGGYSSGL
W*

GH06373.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
Jupiter-PA 197 CG31363-PA 1..197 5..201 1027 100 Plus
Jupiter-PD 191 CG31363-PD 1..191 5..201 976 96.4 Plus
Jupiter-PH 202 CG31363-PH 1..202 5..201 954 91.3 Plus
Jupiter-PC 197 CG31363-PC 17..197 15..201 904 94.1 Plus
Jupiter-PE 208 CG31363-PE 17..208 15..201 882 88.9 Plus

GH06373.pep Sequence

Translation from 12 to 605

> GH06373.pep
MISNFDCTDNQASSKVLRPPGGGSSDIFGSEMPQTPRNVKNRMASNIFAA
EKDNGVKNNGDAPRRGQKTVDSHSRLFGEPTRPITPGKNHMKSSIPFGQN
TEAVAAQKLLTTNGHYNGKSGSVSSASSSVSSSTENLKMNSGSRSVFRNM
SKGNPVTGEGYKVVANEYSQRQESSNGGTPVINKNRIPPGGYSSGLW*

GH06373.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16635-PA 354 GF16635-PA 17..180 11..156 567 81.7 Plus
Dana\GF16635-PA 354 GF16635-PA 309..354 152..197 198 76.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17211-PA 345 GG17211-PA 1..165 1..153 746 91.5 Plus
Dere\GG17211-PA 345 GG17211-PA 298..345 150..197 215 81.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17288-PA 207 GH17288-PA 17..207 11..197 610 71.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
Jupiter-PA 197 CG31363-PA 1..197 1..197 1027 100 Plus
Jupiter-PD 191 CG31363-PD 1..191 1..197 976 96.4 Plus
Jupiter-PH 202 CG31363-PH 1..202 1..197 954 91.3 Plus
Jupiter-PC 197 CG31363-PC 17..197 11..197 904 94.1 Plus
Jupiter-PE 208 CG31363-PE 17..208 11..197 882 88.9 Plus
Jupiter-PI 105 CG31363-PI 1..98 1..98 316 71 Plus
Jupiter-PI 105 CG31363-PI 8..105 101..197 250 54.8 Plus
Jupiter-PB 185 CG31363-PB 140..185 152..197 246 97.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23754-PA 203 GI23754-PA 17..203 11..197 526 65.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12395-PA 361 GL12395-PA 1..190 1..181 563 69 Plus
Dper\GL12395-PA 361 GL12395-PA 297..361 142..197 149 47.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27493-PD 160 GA27493-PD 1..63 1..63 272 79.4 Plus
Dpse\GA27493-PB 153 GA27493-PB 1..63 1..63 271 79.4 Plus
Dpse\GA27493-PC 164 GA27493-PC 1..58 1..58 260 82.8 Plus
Dpse\GA27493-PE 159 GA27493-PE 17..69 11..63 224 77.4 Plus
Dpse\GA27493-PF 170 GA27493-PF 17..64 11..58 213 81.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26090-PA 315 GM26090-PA 1..152 1..152 785 100 Plus
Dsec\GM26090-PA 315 GM26090-PA 270..315 150..197 210 81.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20653-PA 168 GD20653-PA 1..156 1..145 666 92.9 Plus
Dsim\GD15110-PA 183 GD15110-PA 138..183 150..197 209 81.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10600-PA 205 GJ10600-PA 17..205 11..197 525 65.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11035-PA 368 GK11035-PA 17..175 11..151 508 75.5 Plus
Dwil\GK11035-PA 368 GK11035-PA 322..368 150..197 144 60.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10105-PA 347 GE10105-PA 1..163 1..151 736 91.4 Plus
Dyak\GE10105-PA 347 GE10105-PA 300..347 150..197 207 77.1 Plus