GH06385.complete Sequence
1190 bp (1190 high quality bases) assembled on 2002-05-15
GenBank Submission: AY119479
> GH06385.complete
AAACACTCAAACGGAGCAGCTTACAAAAACAGACAACGAAACTGTGAAGT
AAACATTTTCGTCGGGTTCTGGTCATGTGCTCGCTGTGTGGTTCCCGATT
CCAGGGAATATTACGAACTTAACACTTGGTCAGTCCATTGGCCCATGTGC
AGCGTGGGAAATTTGGAAGCAGTTCGTAGTCCGGAATGAAATTAAATGTG
GGTCAAATTCAGTTTCATTAGAACTCGCCAGTGTCGCTAGGCGATTGAGT
TAGATAAGGAGTGAAGTAAAGGCGGGGTATCCAAATGAATATGACTTCCT
TATCCAAGACAGATGGAATTCCACTGAAAGTGAAGCAGGCATCTGTTACC
TCCTTTGTGGTCTCAATTGGCTTGTTATACGATATGCCCAGACCATGCCC
TTTTCACCCTGCTTTTGAGATTTTCTCCGGCAAACGTTCACTGACCTCTT
TCAGAGACCGGAGATCCGAAGAAAGTTTTTAGCCCGAAAATGCGTCACTG
CCCAAACAGAAAACAAGCGGCAACAGAAGCAGCATGAGTGCCAAGAAACT
GTGAAGAGTGTTTCATAGAAAAATTATACATCATGATCGGCGGCCGATAA
AGATCTTCATTAGTCTGGAAACACGGAGTTGGGCCCCAACTCCGAATGGA
GACTGGTGACTGGGTGACCCCAATAGGCATTCAAATCTCTCGATTTGCCT
ACTCGGTCCAACTCTCACTTTTTGCCGATCGCTGCTGTCGGTGAAAATCA
TTCAAATTCGGAATATATGTATGTATGTATGTCCAATATATATGTCCAAG
AGTCGGGGCCAGTTCAACAAACCCCATTGAACTCAATCCGGAGCAATGAC
ACCTCGCCGGGCCCTACAATCCGCACTCAACCTCACTTTCTTTTACGTGC
ATATGTCCATCCCTGTCATCCAAACATCTCTCTCTCCCTCTTGCACCCTT
TGGCCGTTGAGGGGCTTACGGTTGTCTTATAGAGCTGTTGCCGTTGTTGC
AACATTTTTCACTTTCTTTTCGGGGATCGCCATTTGAATGCCTTTCTTTG
GCAGGGTAATGCAAAGCCAACAAAGACGACAACCAACTATTTTGTCCCAA
CTATTTTGATTTCTAAATTATTACTTGCTTTTTAACTTTTAATCAGTATT
AAAACTTTGGAAAATTCAAAAAAAAAAAAAAAAAAAAAAA
GH06385.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nc_13291.a | 1167 | nc_13291.a | 1..1167 | 1..1167 | 5835 | 100 | Plus |
nc_13291.b | 1060 | nc_13291.b | 1..314 | 25..338 | 1570 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:45:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 17924373..17925204 | 336..1167 | 4130 | 99.8 | Plus |
chr3L | 24539361 | chr3L | 17923640..17923978 | 1..339 | 1665 | 99.4 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:34:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17934741..17935574 | 336..1169 | 4170 | 100 | Plus |
3L | 28110227 | 3L | 17934008..17934346 | 1..339 | 1695 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 17927841..17928674 | 336..1169 | 4170 | 100 | Plus |
3L | 28103327 | 3L | 17927108..17927446 | 1..339 | 1695 | 100 | Plus |
Blast to na_te.dros performed 2019-03-15 15:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib4 | 2656 | transib4 TRANSIB4 2656bp | 2477..2636 | 1002..1157 | 122 | 58.9 | Plus |
GH06385.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:46:46 Download gff for
GH06385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 17923640..17923977 | 1..338 | 99 | -> | Plus |
chr3L | 17924376..17925204 | 339..1167 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:39:21 Download gff for
GH06385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43173-RA | 1..216 | 767..982 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 18:44:34 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:39:21 Download gff for
GH06385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43173-RA | 1..1167 | 1..1167 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 18:44:34 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:46:46 Download gff for
GH06385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17934008..17934345 | 1..338 | 100 | -> | Plus |
3L | 17934744..17935572 | 339..1167 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:46:46 Download gff for
GH06385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17934008..17934345 | 1..338 | 100 | -> | Plus |
3L | 17934744..17935572 | 339..1167 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:46:46 Download gff for
GH06385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17934008..17934345 | 1..338 | 100 | -> | Plus |
3L | 17934744..17935572 | 339..1167 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:39:21 Download gff for
GH06385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17927108..17927445 | 1..338 | 100 | -> | Plus |
arm_3L | 17927844..17928672 | 339..1167 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:16:56 Download gff for
GH06385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17927108..17927445 | 1..338 | 100 | -> | Plus |
3L | 17927844..17928672 | 339..1167 | 100 | | Plus |
GH06385.pep Sequence
Translation from 766 to 981
> GH06385.pep
MYVCMSNIYVQESGPVQQTPLNSIRSNDTSPGPTIRTQPHFLLRAYVHPC
HPNISLSLLHPLAVEGLTVVL*
Sequence GH06385.pep has no blast hits.
GH06385.hyp Sequence
Translation from 766 to 981
> GH06385.hyp
MYVCMSNIYVQESGPVQQTPLNSIRSNDTSPGPTIRTQPHFLLRAYVHPC
HPNISLSLLHPLAVEGLTVVL*
Sequence GH06385.hyp has no blast hits.