Clone GH06403 Report

Search the DGRC for GH06403

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:64
Well:3
Vector:pOT2
Associated Gene/TranscriptCG8336-RA
Protein status:GH06403.pep: gold
Preliminary Size:2200
Sequenced Size:1453

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8336 2001-01-01 Release 2 assignment
CG8336 2001-09-19 Blastp of sequenced clone
CG8336 2003-01-01 Sim4 clustering to Release 3
CG8336 2008-04-29 Release 5.5 accounting
CG8336 2008-08-15 Release 5.9 accounting
CG8336 2008-12-18 5.12 accounting

Clone Sequence Records

GH06403.complete Sequence

1453 bp (1453 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058303

> GH06403.complete
AAAACACTAGTTGGGAACACGATTCCACTTTGTTCTGAAAGTGAAACATC
TTAACCACACCAACGCTTAATTGAAAGGTGTTTTGCCGTTATCGCCACAC
AGTCACACTGTGAAATAAGTCTGGAGTACTTGGCGGGCAGTGATAAGTCA
CATCAGCCAAGGCCCGCCCCTAAGGGCAACAATGGAAGAACGCAAGCTGC
TCCGCGCGGTGAAATCAACTAATCCACTGGTCTACCTGGACATTTCCATT
GGCAAGGAGGATGCGGGTCGAATGATAATTGAACTGCGCAAGGATGTTGT
GCCGAAGACAGCGGAAAATTTCCGTGCCCTGTGCACGGGCGAATGTGGTA
TCGGTACTCTGGGCAAACCGCTCCACTACAAGGGCACAAAGTTCCACAAG
ATCAAGCGAGTCTTCGTCGTCCAGAGTGGGGATGTGGTGAAGAACGATGG
AAGCAGCGGCGAGAGCATCTACGGACCAGTTTTCGATGACGAGAACTTCG
AACTCTCACACAACGAAGAGGGCGTGGTCAGCATGGCCAACTACGGCAAG
CCAAACTCCAACAACTCGCAGTTTTTCATTTCCGCCGCGGGCTGTGAAAA
TCTGAATGGAACAAACGTAGTCGTAGGTCGTGTTTTACGCGGCCTGGGTA
TCGTAGCTGAAATGGAACAAAACTGCACTGACGAGGGCGATCCCACGGCG
CCGATCGTGATACGGGACTGCGGAGAGATAGCTCACAACGAGGACTGGGG
CATCGAGTGCAACGACGAGACGACGGACAAGTTGCCTGCCTATCCCCAAG
ACTGGCCGCGCAAGCTCGACAAGTTCACAGGAGATGGGGCGGTGGAACTT
CTCACGGGCATTCGCCAATCGGGCAATCACTTCTATCAGCTTGGACGCTA
TCACGAAGCACGGGCAAAATATCGCAAGGCGAATCGATACTATCATTACC
TGAGCAGACAGTTCGGTTGGCAGCAGCTGAATCCTCTCAAAAAACACCTT
GTAGATGAGGATCTGCTCAAGGTCGACGGCTTCTCCGTGGTAAACAACAT
TAATGCAGCCGCTGTGGACCTAAAAGTTGGCAACTATACGAGCGCTAGAG
AAGTTTGCAACGAAGCCATTCGTCTAGATCCGAAATGTAGCAAGGCTTTC
TATCGACGCGCCCAGGCGCAGCGCGGATTGCGCAACTACGAGGAGGCCAT
AAACGATCTGAAAACGGCTCACAATCTCCTGCCGGAGAATAAACAGATCC
TAAATGAACTGAACAGCACCAAGCAGCTCCTGGCCCAGTACAACCGACAA
CAACGAAATGCCCTTAAAAATCTTTTTGCCTAGCTGGCAGCCAGTCACCA
TTTTCATGGCTTTTTTAAATGTAAATACTTATTAATAAATAAATGTTGGA
TTTACCAAGTCAGTGGTTTACCACAAGAAGGTAAAAAAAAAAAAAAAAAA
AAA

GH06403.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8336-RA 1500 CG8336-RA 69..1500 1..1432 7160 100 Plus
CG8336-RC 1445 CG8336-RC 89..1445 76..1432 6785 100 Plus
CG8336-RB 1555 CG8336-RB 241..1555 118..1432 6575 100 Plus
CG8336-RB 1555 CG8336-RB 69..187 1..119 595 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9623081..9623683 830..1432 2955 99.3 Plus
chr3L 24539361 chr3L 9622706..9623027 509..830 1550 98.8 Plus
chr3L 24539361 chr3L 9622265..9622510 263..508 1200 99.2 Plus
chr3L 24539361 chr3L 9622031..9622176 118..263 715 99.3 Plus
chr3L 24539361 chr3L 9620644..9620722 1..79 395 100 Plus
chr3L 24539361 chr3L 9621934..9621977 76..119 205 97.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:34:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9631193..9631797 830..1434 3025 100 Plus
3L 28110227 3L 9630818..9631139 509..830 1610 100 Plus
3L 28110227 3L 9630379..9630624 263..508 1230 100 Plus
3L 28110227 3L 9630157..9630302 118..263 730 100 Plus
3L 28110227 3L 9628744..9628822 1..79 395 100 Plus
3L 28110227 3L 9630060..9630103 76..119 220 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9624293..9624897 830..1434 3025 100 Plus
3L 28103327 3L 9623918..9624239 509..830 1610 100 Plus
3L 28103327 3L 9623479..9623724 263..508 1230 100 Plus
3L 28103327 3L 9623257..9623402 118..263 730 100 Plus
3L 28103327 3L 9621844..9621922 1..79 395 100 Plus
3L 28103327 3L 9623160..9623203 76..119 220 100 Plus
Blast to na_te.dros performed on 2019-03-16 14:51:35 has no hits.

GH06403.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:52:40 Download gff for GH06403.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9620644..9620720 1..77 100 -> Plus
chr3L 9621936..9621977 78..119 97 -> Plus
chr3L 9622033..9622176 120..263 99 -> Plus
chr3L 9622266..9622510 264..508 99 -> Plus
chr3L 9622706..9623026 509..829 98 -> Plus
chr3L 9623081..9623683 830..1432 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:20:44 Download gff for GH06403.complete
Subject Subject Range Query Range Percent Splice Strand
CG8336-RC 1..1152 182..1333 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:09:32 Download gff for GH06403.complete
Subject Subject Range Query Range Percent Splice Strand
CG8336-RC 1..1152 182..1333 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:01:11 Download gff for GH06403.complete
Subject Subject Range Query Range Percent Splice Strand
CG8336-RA 1..1152 182..1333 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:40:28 Download gff for GH06403.complete
Subject Subject Range Query Range Percent Splice Strand
CG8336-RC 1..1152 182..1333 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:33:53 Download gff for GH06403.complete
Subject Subject Range Query Range Percent Splice Strand
CG8336-RA 1..1152 182..1333 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:00:30 Download gff for GH06403.complete
Subject Subject Range Query Range Percent Splice Strand
CG8336-RA 69..1500 1..1432 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:09:32 Download gff for GH06403.complete
Subject Subject Range Query Range Percent Splice Strand
CG8336-RA 69..1500 1..1432 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:11 Download gff for GH06403.complete
Subject Subject Range Query Range Percent Splice Strand
CG8336-RA 69..1500 1..1432 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:40:28 Download gff for GH06403.complete
Subject Subject Range Query Range Percent Splice Strand
CG8336-RA 69..1500 1..1432 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:53 Download gff for GH06403.complete
Subject Subject Range Query Range Percent Splice Strand
CG8336-RA 69..1500 1..1432 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:40 Download gff for GH06403.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9628744..9628820 1..77 100 -> Plus
3L 9630062..9630103 78..119 100 -> Plus
3L 9630159..9630302 120..263 100 -> Plus
3L 9630380..9630624 264..508 100 -> Plus
3L 9630818..9631138 509..829 100 -> Plus
3L 9631193..9631795 830..1432 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:40 Download gff for GH06403.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9628744..9628820 1..77 100 -> Plus
3L 9630062..9630103 78..119 100 -> Plus
3L 9630159..9630302 120..263 100 -> Plus
3L 9630380..9630624 264..508 100 -> Plus
3L 9630818..9631138 509..829 100 -> Plus
3L 9631193..9631795 830..1432 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:40 Download gff for GH06403.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9628744..9628820 1..77 100 -> Plus
3L 9630062..9630103 78..119 100 -> Plus
3L 9630159..9630302 120..263 100 -> Plus
3L 9630380..9630624 264..508 100 -> Plus
3L 9630818..9631138 509..829 100 -> Plus
3L 9631193..9631795 830..1432 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:11 Download gff for GH06403.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9621844..9621920 1..77 100 -> Plus
arm_3L 9623162..9623203 78..119 100 -> Plus
arm_3L 9623259..9623402 120..263 100 -> Plus
arm_3L 9623480..9623724 264..508 100 -> Plus
arm_3L 9623918..9624238 509..829 100 -> Plus
arm_3L 9624293..9624895 830..1432 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:17:58 Download gff for GH06403.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9621844..9621920 1..77 100 -> Plus
3L 9623162..9623203 78..119 100 -> Plus
3L 9623259..9623402 120..263 100 -> Plus
3L 9623480..9623724 264..508 100 -> Plus
3L 9623918..9624238 509..829 100 -> Plus
3L 9624293..9624895 830..1432 100   Plus

GH06403.pep Sequence

Translation from 181 to 1332

> GH06403.pep
MEERKLLRAVKSTNPLVYLDISIGKEDAGRMIIELRKDVVPKTAENFRAL
CTGECGIGTLGKPLHYKGTKFHKIKRVFVVQSGDVVKNDGSSGESIYGPV
FDDENFELSHNEEGVVSMANYGKPNSNNSQFFISAAGCENLNGTNVVVGR
VLRGLGIVAEMEQNCTDEGDPTAPIVIRDCGEIAHNEDWGIECNDETTDK
LPAYPQDWPRKLDKFTGDGAVELLTGIRQSGNHFYQLGRYHEARAKYRKA
NRYYHYLSRQFGWQQLNPLKKHLVDEDLLKVDGFSVVNNINAAAVDLKVG
NYTSAREVCNEAIRLDPKCSKAFYRRAQAQRGLRNYEEAINDLKTAHNLL
PENKQILNELNSTKQLLAQYNRQQRNALKNLFA*

GH06403.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25145-PA 415 GF25145-PA 37..415 5..383 1738 83.6 Plus
Dana\GF13802-PA 183 GF13802-PA 13..183 11..183 408 47.1 Plus
Dana\GF11346-PA 394 GF11346-PA 224..393 6..183 405 47.2 Plus
Dana\GF18880-PA 946 GF18880-PA 6..182 8..183 400 45.5 Plus
Dana\GF19040-PA 155 GF19040-PA 6..155 26..183 347 46.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15394-PA 383 GG15394-PA 1..383 1..383 1930 93.7 Plus
Dere\GG21795-PA 300 GG21795-PA 130..299 6..183 412 47.2 Plus
Dere\GG10814-PA 183 GG10814-PA 14..183 12..183 408 48 Plus
Dere\GG11596-PA 955 GG11596-PA 6..182 8..183 386 45.5 Plus
Dere\GG19332-PA 227 GG19332-PA 64..227 12..183 380 45.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16309-PA 383 GH16309-PA 5..383 3..383 1556 76.4 Plus
Dgri\GH14843-PA 164 GH14843-PA 2..164 13..183 408 49.1 Plus
Dgri\GH20760-PA 304 GH20760-PA 142..303 14..183 408 49.4 Plus
Dgri\GH20149-PA 183 GH20149-PA 13..183 11..183 405 46.6 Plus
Dgri\GH14842-PA 164 GH14842-PA 4..164 15..183 401 48.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8336-PD 383 CG8336-PD 1..383 1..383 2021 100 Plus
CG8336-PC 383 CG8336-PC 1..383 1..383 2021 100 Plus
CG8336-PA 383 CG8336-PA 1..383 1..383 2021 100 Plus
CG8336-PB 383 CG8336-PB 1..383 1..383 2021 100 Plus
cyp33-PA 300 CG4886-PA 130..299 6..183 400 47.2 Plus
CG17266-PB 183 CG17266-PB 14..183 12..183 398 48 Plus
CG17266-PA 183 CG17266-PA 14..183 12..183 398 48 Plus
CG7768-PB 164 CG7768-PB 4..164 15..183 396 48.5 Plus
CG7768-PA 164 CG7768-PA 4..164 15..183 396 48.5 Plus
Moca-cyp-PA 970 CG1866-PA 6..182 8..183 385 46.1 Plus
Cyp1-PA 227 CG9916-PA 64..227 12..183 373 45.3 Plus
CG2852-PD 205 CG2852-PD 31..204 17..197 349 43.4 Plus
CG2852-PA 205 CG2852-PA 31..204 17..197 349 43.4 Plus
ninaA-PA 237 CG3966-PA 29..203 17..208 293 35.9 Plus
CG11777-PA 161 CG11777-PA 8..133 27..163 227 42 Plus
CG7747-PA 517 CG7747-PA 289..427 29..177 221 37.7 Plus
Cypl-PA 176 CG13892-PA 30..168 29..177 199 36.4 Plus
CG10907-PA 502 CG10907-PA 18..133 25..151 187 38.3 Plus
CG1847-PA 320 CG1847-PA 98..320 148..382 153 25.1 Plus
CG1847-PC 342 CG1847-PC 98..320 148..382 153 25.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13253-PA 382 GI13253-PA 5..381 3..382 1568 76.8 Plus
Dmoj\GI20843-PA 303 GI20843-PA 141..302 14..183 408 50 Plus
Dmoj\GI20240-PA 183 GI20240-PA 13..183 11..183 405 46.6 Plus
Dmoj\GI13698-PA 165 GI13698-PA 2..165 12..183 397 47.1 Plus
Dmoj\GI13614-PA 164 GI13614-PA 4..164 15..183 395 47.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12709-PA 384 GL12709-PA 1..384 1..383 1631 77.9 Plus
Dper\GL11464-PA 302 GL11464-PA 132..301 6..183 411 47.2 Plus
Dper\GL10991-PA 183 GL10991-PA 13..183 11..183 403 46.6 Plus
Dper\GL23654-PA 939 GL23654-PA 6..182 8..183 389 43.8 Plus
Dper\GL17482-PA 205 GL17482-PA 31..204 17..197 345 42.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20999-PA 384 GA20999-PA 1..384 1..383 1630 77.9 Plus
Dpse\GA18502-PA 302 GA18502-PA 132..301 6..183 410 47.2 Plus
Dpse\GA14426-PA 183 GA14426-PA 13..183 11..183 403 46.6 Plus
Dpse\GA15038-PA 930 GA15038-PA 6..182 8..183 393 44.4 Plus
Dpse\Cyp1-PA 226 GA22120-PA 54..226 4..183 377 45.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25168-PA 383 GM25168-PA 1..383 1..383 2015 97.7 Plus
Dsec\GM21798-PA 301 GM21798-PA 131..300 6..183 411 47.8 Plus
Dsec\GM20863-PA 183 GM20863-PA 13..183 11..183 409 47.7 Plus
Dsec\GM25460-PA 164 GM25460-PA 4..164 15..183 400 48.5 Plus
Dsec\GM13410-PA 227 GM13410-PA 64..227 12..183 381 45.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14199-PA 383 GD14199-PA 1..383 1..383 2021 97.9 Plus
Dsim\GD11288-PA 301 GD11288-PA 131..300 6..183 410 47.8 Plus
Dsim\GD10314-PA 183 GD10314-PA 13..183 11..183 409 47.7 Plus
Dsim\GD21371-PA 1003 GD21371-PA 6..182 8..183 391 46.1 Plus
Dsim\GD25116-PA 203 GD25116-PA 29..202 17..197 362 43.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12024-PA 382 GJ12024-PA 5..381 3..382 1549 75.3 Plus
Dvir\GJ20192-PA 183 GJ20192-PA 13..183 11..183 404 46.6 Plus
Dvir\GJ20579-PA 302 GJ20579-PA 140..301 14..183 404 49.4 Plus
Dvir\GJ14038-PA 164 GJ14038-PA 4..164 15..183 403 49.7 Plus
Dvir\GJ13951-PA 164 GJ13951-PA 2..164 13..183 400 48.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16621-PA 387 GK16621-PA 1..387 1..383 1635 78.6 Plus
Dwil\GK23148-PA 183 GK23148-PA 13..183 11..183 402 47.1 Plus
Dwil\GK16511-PA 165 GK16511-PA 5..165 15..183 366 45 Plus
Dwil\GK14585-PA 165 GK14585-PA 5..165 15..183 365 44.4 Plus
Dwil\GK21428-PA 204 GK21428-PA 30..203 17..197 345 42.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20859-PA 383 GE20859-PA 1..383 1..383 1969 95.6 Plus
Dyak\GE11871-PA 300 GE11871-PA 130..299 6..183 413 47.2 Plus
Dyak\GE24621-PA 183 GE24621-PA 14..183 12..183 408 48 Plus
Dyak\GE22008-PA 180 GE22008-PA 20..180 15..183 401 48.5 Plus
Dyak\Cyp1-PA 227 GE15979-PA 64..227 12..183 381 45.9 Plus

GH06403.hyp Sequence

Translation from 181 to 1332

> GH06403.hyp
MEERKLLRAVKSTNPLVYLDISIGKEDAGRMIIELRKDVVPKTAENFRAL
CTGECGIGTLGKPLHYKGTKFHKIKRVFVVQSGDVVKNDGSSGESIYGPV
FDDENFELSHNEEGVVSMANYGKPNSNNSQFFISAAGCENLNGTNVVVGR
VLRGLGIVAEMEQNCTDEGDPTAPIVIRDCGEIAHNEDWGIECNDETTDK
LPAYPQDWPRKLDKFTGDGAVELLTGIRQSGNHFYQLGRYHEARAKYRKA
NRYYHYLSRQFGWQQLNPLKKHLVDEDLLKVDGFSVVNNINAAAVDLKVG
NYTSAREVCNEAIRLDPKCSKAFYRRAQAQRGLRNYEEAINDLKTAHNLL
PENKQILNELNSTKQLLAQYNRQQRNALKNLFA*

GH06403.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8336-PD 383 CG8336-PD 1..383 1..383 2021 100 Plus
CG8336-PC 383 CG8336-PC 1..383 1..383 2021 100 Plus
CG8336-PA 383 CG8336-PA 1..383 1..383 2021 100 Plus
CG8336-PB 383 CG8336-PB 1..383 1..383 2021 100 Plus
CG17266-PB 183 CG17266-PB 14..183 12..183 398 48 Plus