Clone GH06422 Report

Search the DGRC for GH06422

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:64
Well:22
Vector:pOT2
Associated Gene/TranscriptCG16971-RC
Protein status:GH06422.pep: validated full length
Preliminary Size:4541
Sequenced Size:4286

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16971 2001-01-01 Release 2 assignment
CG13878 2001-01-01 Release 2 assignment
CG32477 2001-09-19 Blastp of sequenced clone
CR32477 2008-08-15 Release 5.9 accounting
CR32477 2008-12-18 5.12 accounting

Clone Sequence Records

GH06422.complete Sequence

4286 bp (4286 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060244

> GH06422.complete
TCTTGAGGGCTCCAGACGAGGATCTTTCCAGCAAATCTATGCGCAAGCAG
GCGTCAAAGAGTTTGTAGACTAGGCACGACCATCACATTTCGTTTTTTTT
TTTTTTTTTATAGCGTTGCATCGCAGTTGATCGGTGCCTGCGGGCATGTA
TAAATGGAATCTAGCGAGGCGGAAGATTGAGGTCTTCAATTCTATGGCCC
CAAACAACGCTCCTGCGACATCAATCCCTCAATTAGAATATGTGCAAAGA
AGCATAACTAATCAACTGAACAAGCGTAAAAGCTAAGATATATGCAACCG
ATATCTTTTCTTTCGTATTTTGTAGAAATACATTTTCATGGACTGATAAT
CTACAGAGAATACCAACTCGGCGCTATGGGCCCGCCCAATACATGTAAAT
TTGTGATTTTATGTCCAAAATATTTTTTGTCTTGTAGCATTATGGGTGCA
GTTGAATGTACCTGCCCATAATTAAAGCCTGCAAATCAAGAGTTATTGTT
AAACGCAAGAGGGAACATTTTGAACAGACTCAAATCTGTACACGGCCTCT
GTAAGGAATGTGCAATCGATACCCTTTTCTCTCGTATTTTATAGAAATAC
ATGTTGTGGAACAGTTTAGATGCTATGGAATTGTACCACGTAGTTGGACC
ACCACACAAATTTAATTAAAGTATGGAGAAAAACTTTTTTCTGTTTTCAA
GCTGTTCCCGTTGAATGTGCCTGCCCACATCTCATCTATAGCTTCTGAGT
AAATCCAACAGCGAACCGTCTATTCTTGGGACTTTAACAGCGTTTGAGAA
ATGACGCTTATTTATGAATTCATTGCAGTGTTTATACAGAGACATCGGTT
TCAAGCAACCAGTCTTATCAATCACATAGTTGACATACCAGTGCACATTT
GCCTGTATTAAAACCAACCGAGAACATGTAGCAAAATTTCTTGAGGCAAT
GGGAATCAAATGCCAACTTGAAAGCAATAACACCAACACTAAGTCGTCGC
AGTCCAACATCCATACTACACGGCGAATTCGAATTGAAGACGCTGGTCAG
GTCTGAACCCAACTAGAACCCGCTTACACCTGTTTTTCAGCAATTTTTCT
GGTCAGGATGTGGATTATCTGTCACAGAAACTTCGTTTGTCTTGAGCGTC
GCTAAGATTGGCCGTTTGACCCTCCCAAAAGTGAGATTCTAAGCAGCCTT
AAATTTATTTTACAATTCTTACAGCGGTGCCGCACAGTTGAGTGTGCCTG
TGGGCATCGACTAAGCAATATTTGAACCGAAGGGCAGGGCAGTGGACCGT
TCCGTTGATGATGATGTGCACCGCTCCGAGCTGGCTAAGTCTACTGCTGT
GCTGCTGCAAATCGTTAAAGGGAACCCAAAACGATGCATCAAGTCCATCC
AGTTAGGCTTCTCTTCCAAAGCACAGCTCACCTGCGCTACAACGACAACC
AATTCAATCGCACCTGCTTCTGCAAGCGATCACAATACGTCAAATGAGCA
TCGAGCACAGAAAGCAAGCAAACAACCAGGTTAATGGCTTCCTCTGCTGA
CTATGAAACTATACGCCTTTACATTGCAGCCAAGAAGCCTCTTAGTGCAT
ATTCAACTACCAGCACAGAGCTTCTCAATGACTGGAGTAAGCATTGTTCT
GACCGCATCGGACCCTGACCGAGTCCGACTTGGGTGCCTCTGGTCGCAAG
ATCTACATTAGGACAGAGCCAGAATAGGAGCGCTTATCTAGCGCCATGAT
GTGCTGAGCTGAACCTAAGCACGTACTGCATTGCACCGCACAGATATGTG
CGTTCGGTCCACGCTAAAGGGAATCAAATGCGTTTGGACCGAGAGCCGAT
ACACCGCACCATCACCAGTATTCGCTGTGAAGTGAGCTGATGTGTTGTCG
TTGTTACAGGGCTGCTGCTGCAACTGCTCCACAGGTATCCTCGCCTAGCG
TCGGTAACTATCATTTGTCAATTTTAGCGGCCGGCAGTGTACATCAAACA
TTGAAGTCCGGAGTCCGGAGTGGCATGTAATTAACGGCAGATGTGAAACC
AGCAAATGGTGCTCAAGCATTCCATTTTAAATCTGAAGATTGTCAGCAGT
AACAGTTAAAGACTATCGACGCAGACTTGCAGAACGAAGCGCAGGAAGGA
CAAAGCACTTCGATCACCAGCGGGTTGTCGTTTTACTTGCACTTTCCTTC
CGTAGGTAGCCCAGAATTCGAGAAAGCCCATATCCATCGCAAAGGGAAAC
AAATGCGATTAGTGTTTGAAGACCAAGCTGGGTGTCCAATGTGTCGCACC
ACGATTAGCCAGTTGAGCCCATAACTCCTGGCCCGCCGATCATCGTACCG
CAAAAGGGAATCAAATGCGAGGTGGTACTACAGCAGTCGAGCTCCTCGTT
GAGCTCCTGGTTTAAGTCGAACTCCCAACTGAGCTCCTGGTCGAGTTCTT
CGCTTCAGCGTTTTTATCGTAAAGGGAATCCAACGCGATGTACAGCGACA
GCGGCAGGCAGGGTCACCCAATACACAAAGGTATACCAATATGATCAGAG
TTCCAGTCCGTGCAATTACGCTTTTCAGAACCTCTCAAAAACTAATCTGC
ACGTGTCTAAATCTGGCTGCCATGCCAGGCGCGACATCAATCATATTCGC
CATGTTGGTCTCAAAGGGAATCCAAGAGACACGCGCCCCGCGGTACAACC
AACTGAAGACCAAATAGATTTTGTTATGCATTTATAACCAAGCATTTTAG
AAGTCATATCCTCATAATTTTTTCCTTTAGTGTTTCCAAATCTATGTATT
CTAAACGAATCGTTTCATTATCTTGTAGGCTTTTATAAACCTTTAATTTA
TTACTTGTAAACCTTTCCTCTAAGAGTCAATGCAGACATCCGACTTCGCT
GACGATTGCATCGGGACTGCATTACCCTAGGATAGACGGTCCGGTCTAGA
AGTAGCAGCAAGAGTCAGTTAAATATCAGTACCGCTATTAGCAGAAGATT
CATGGCAGTAAGATGATGTGGATGCACCGTACATAGACGTTTCAAACTGC
AGAGGATCGTTTGACCCCCGAACCAAGGCAGGGAGACCATACATACACAG
GCGGAGGCAGTGCTGACCCTCAATACATTCGAGTATTTCAACACTCTACC
TTTTACCTATATTTACTGGGCATTCAATCACCAAATTCGCATCCTGGGTC
TATTTGGAGCATATTAAGAACGAACACTACACGGCGTAGGAGCACCACAC
GATTTGGTCATTTTTATTATGAGAAGTCCTAAAATCCTCCTCGGATCATT
CCTCATTATCTGCATTTGGAGCAACAAGTAGGCTGGAGGTATCATTTCTT
CACTAAGCACCATCGATTTCACACTACTGGCTTGGGATAGCACCTAATTC
TTTACGAGTTTCGGCACTGATGACGACTTCAATCCTTGTTTCAACCCGTA
CCCCTTCGAACCAATATAAAAGTTGGATTGCATACAGCTTTCGCTTCGCT
ACACACTGGTCGATTCTTTTTCTTTGTGAGGACCCTTCGTGAGGATATTA
GATTTGTTGAAGAATGATTCTCTAACTTGGACTGCGGCGTGGGATTCAGT
CTAATTTAACCATCGACAGCGGCCTAGGAGTAAATTTGGACAGCGGCGTG
GGATTTTCGGCTCTCAAAGACGACGGCGGCGGACGTACGGATAGTTCAGA
CTGCGGCGAGGGATATCAAGTTTTTGCAACGCGGGATTATTAGGGCGTTT
AGGCCAGGGCGCTAGGAACCATATTCTTAAGACTACTGGAATTTACATCA
ATGGAGATGACTGCGGCGTGGGAGACGGAGATCGGGACTGCAGCGAGGGA
TCGAGGTTCTGGACAGCGGCGCGGGATTCTTATAAGATTGGACGGCGGCG
TGGGACCTTTTTTGACGGCAGCGTGGGAGTTTAGGACTGCAGCGCGGGAA
TTTCTGACGGCGGCGAGGGATCCTCGGTTTAATTTTTCGGCAATTGGTCA
GCCATCGCATTCCATATACATGCGTGTCACTCCATTTATTGATAGTTCAA
AGCTGATATACTTAGGTGGCGTGATCAGCGTAATCACGCCTCCAAAAATA
CGCATCCCTGATTATCCCTTATATGGAAAATCTTCATTGAATATACATTT
ATTTACACTTCTGGAATACCGGAAAGCAACCCCAATACTTATGCCGATGA
TTCTAATACATGAAACGATTTAAGATCACAATAAATTGATTTTTGAAAAG
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH06422.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG16971.a 1844 CG16971.a 1180..1844 1..666 3290 99.8 Plus
CG16971.c 1543 CG16971.c 879..1543 1..666 3290 99.8 Plus
nc_9600.a 699 nc_9600.a 1..425 2106..2530 2125 100 Plus
nc_9600.a 699 nc_9600.a 423..699 2872..3148 1385 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 227472..230919 803..4250 17240 100 Plus
chr3L 24539361 chr3L 226613..227414 1..803 3965 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 16:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
CR32477-RA 4257 CR32477-RA 1..4251 1..4252 21220 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 227517..230966 803..4252 17250 100 Plus
3L 28110227 3L 226658..227459 1..803 3965 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 227517..230966 803..4252 17250 100 Plus
3L 28103327 3L 226658..227459 1..803 3975 99.8 Plus
Blast to na_te.dros performed on 2019-03-16 03:02:53 has no hits.

GH06422.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:03:40 Download gff for GH06422.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 226613..227414 1..803 99 -> Plus
chr3L 227473..230919 804..4250 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 20:40:29 has no hits.
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 16:34:46 Download gff for GH06422.complete
Subject Subject Range Query Range Percent Splice Strand
CR32477-RA 1..4249 1..4250 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:00:32 Download gff for GH06422.complete
Subject Subject Range Query Range Percent Splice Strand
CG16971-RC 377..585 113..321 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:40:30 Download gff for GH06422.complete
Subject Subject Range Query Range Percent Splice Strand
CG16971-RC 377..585 113..321 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:40 Download gff for GH06422.complete
Subject Subject Range Query Range Percent Splice Strand
3L 226658..227459 1..803 99 -> Plus
3L 227518..230964 804..4250 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:40 Download gff for GH06422.complete
Subject Subject Range Query Range Percent Splice Strand
3L 226658..227459 1..803 99 -> Plus
3L 227518..230964 804..4250 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:40 Download gff for GH06422.complete
Subject Subject Range Query Range Percent Splice Strand
3L 226658..227459 1..803 99 -> Plus
3L 227518..230964 804..4250 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:56 Download gff for GH06422.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 226658..227459 1..803 99 -> Plus
arm_3L 227518..230964 804..4250 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:56 Download gff for GH06422.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 226658..227459 1..803 99 -> Plus
arm_3L 227518..230964 804..4250 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:56 Download gff for GH06422.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 226658..227459 1..803 99 -> Plus
arm_3L 227518..230964 804..4250 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:18:00 Download gff for GH06422.complete
Subject Subject Range Query Range Percent Splice Strand
3L 226658..227459 1..803 99 -> Plus
3L 227518..230964 804..4250 100   Plus

GH06422.pep Sequence

Translation from 3800 to 4222

> GH06422.pep
MEMTAAWETEIGTAARDRGSGQRRGILIRLDGGVGPFLTAAWEFRTAARE
FLTAARDPRFNFSAIGQPSHSIYMRVTPFIDSSKLIYLGGVISVITPPKI
RIPDYPLYGKSSLNIHLFTLLEYRKATPILMPMILIHETI*
Sequence GH06422.pep has no blast hits.

GH06422.hyp Sequence

Translation from 3800 to 4222

> GH06422.hyp
MEMTAAWETEIGTAARDRGSGQRRGILIRLDGGVGPFLTAAWEFRTAARE
FLTAARDPRFNFSAIGQPSHSIYMRVTPFIDSSKLIYLGGVISVITPPKI
RIPDYPLYGKSSLNIHLFTLLEYRKATPILMPMILIHETI*
Sequence GH06422.hyp has no blast hits.