Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH06422.complete Sequence
4286 bp (4286 high quality bases) assembled on 2001-09-19
GenBank Submission: AY060244
> GH06422.complete
TCTTGAGGGCTCCAGACGAGGATCTTTCCAGCAAATCTATGCGCAAGCAG
GCGTCAAAGAGTTTGTAGACTAGGCACGACCATCACATTTCGTTTTTTTT
TTTTTTTTTATAGCGTTGCATCGCAGTTGATCGGTGCCTGCGGGCATGTA
TAAATGGAATCTAGCGAGGCGGAAGATTGAGGTCTTCAATTCTATGGCCC
CAAACAACGCTCCTGCGACATCAATCCCTCAATTAGAATATGTGCAAAGA
AGCATAACTAATCAACTGAACAAGCGTAAAAGCTAAGATATATGCAACCG
ATATCTTTTCTTTCGTATTTTGTAGAAATACATTTTCATGGACTGATAAT
CTACAGAGAATACCAACTCGGCGCTATGGGCCCGCCCAATACATGTAAAT
TTGTGATTTTATGTCCAAAATATTTTTTGTCTTGTAGCATTATGGGTGCA
GTTGAATGTACCTGCCCATAATTAAAGCCTGCAAATCAAGAGTTATTGTT
AAACGCAAGAGGGAACATTTTGAACAGACTCAAATCTGTACACGGCCTCT
GTAAGGAATGTGCAATCGATACCCTTTTCTCTCGTATTTTATAGAAATAC
ATGTTGTGGAACAGTTTAGATGCTATGGAATTGTACCACGTAGTTGGACC
ACCACACAAATTTAATTAAAGTATGGAGAAAAACTTTTTTCTGTTTTCAA
GCTGTTCCCGTTGAATGTGCCTGCCCACATCTCATCTATAGCTTCTGAGT
AAATCCAACAGCGAACCGTCTATTCTTGGGACTTTAACAGCGTTTGAGAA
ATGACGCTTATTTATGAATTCATTGCAGTGTTTATACAGAGACATCGGTT
TCAAGCAACCAGTCTTATCAATCACATAGTTGACATACCAGTGCACATTT
GCCTGTATTAAAACCAACCGAGAACATGTAGCAAAATTTCTTGAGGCAAT
GGGAATCAAATGCCAACTTGAAAGCAATAACACCAACACTAAGTCGTCGC
AGTCCAACATCCATACTACACGGCGAATTCGAATTGAAGACGCTGGTCAG
GTCTGAACCCAACTAGAACCCGCTTACACCTGTTTTTCAGCAATTTTTCT
GGTCAGGATGTGGATTATCTGTCACAGAAACTTCGTTTGTCTTGAGCGTC
GCTAAGATTGGCCGTTTGACCCTCCCAAAAGTGAGATTCTAAGCAGCCTT
AAATTTATTTTACAATTCTTACAGCGGTGCCGCACAGTTGAGTGTGCCTG
TGGGCATCGACTAAGCAATATTTGAACCGAAGGGCAGGGCAGTGGACCGT
TCCGTTGATGATGATGTGCACCGCTCCGAGCTGGCTAAGTCTACTGCTGT
GCTGCTGCAAATCGTTAAAGGGAACCCAAAACGATGCATCAAGTCCATCC
AGTTAGGCTTCTCTTCCAAAGCACAGCTCACCTGCGCTACAACGACAACC
AATTCAATCGCACCTGCTTCTGCAAGCGATCACAATACGTCAAATGAGCA
TCGAGCACAGAAAGCAAGCAAACAACCAGGTTAATGGCTTCCTCTGCTGA
CTATGAAACTATACGCCTTTACATTGCAGCCAAGAAGCCTCTTAGTGCAT
ATTCAACTACCAGCACAGAGCTTCTCAATGACTGGAGTAAGCATTGTTCT
GACCGCATCGGACCCTGACCGAGTCCGACTTGGGTGCCTCTGGTCGCAAG
ATCTACATTAGGACAGAGCCAGAATAGGAGCGCTTATCTAGCGCCATGAT
GTGCTGAGCTGAACCTAAGCACGTACTGCATTGCACCGCACAGATATGTG
CGTTCGGTCCACGCTAAAGGGAATCAAATGCGTTTGGACCGAGAGCCGAT
ACACCGCACCATCACCAGTATTCGCTGTGAAGTGAGCTGATGTGTTGTCG
TTGTTACAGGGCTGCTGCTGCAACTGCTCCACAGGTATCCTCGCCTAGCG
TCGGTAACTATCATTTGTCAATTTTAGCGGCCGGCAGTGTACATCAAACA
TTGAAGTCCGGAGTCCGGAGTGGCATGTAATTAACGGCAGATGTGAAACC
AGCAAATGGTGCTCAAGCATTCCATTTTAAATCTGAAGATTGTCAGCAGT
AACAGTTAAAGACTATCGACGCAGACTTGCAGAACGAAGCGCAGGAAGGA
CAAAGCACTTCGATCACCAGCGGGTTGTCGTTTTACTTGCACTTTCCTTC
CGTAGGTAGCCCAGAATTCGAGAAAGCCCATATCCATCGCAAAGGGAAAC
AAATGCGATTAGTGTTTGAAGACCAAGCTGGGTGTCCAATGTGTCGCACC
ACGATTAGCCAGTTGAGCCCATAACTCCTGGCCCGCCGATCATCGTACCG
CAAAAGGGAATCAAATGCGAGGTGGTACTACAGCAGTCGAGCTCCTCGTT
GAGCTCCTGGTTTAAGTCGAACTCCCAACTGAGCTCCTGGTCGAGTTCTT
CGCTTCAGCGTTTTTATCGTAAAGGGAATCCAACGCGATGTACAGCGACA
GCGGCAGGCAGGGTCACCCAATACACAAAGGTATACCAATATGATCAGAG
TTCCAGTCCGTGCAATTACGCTTTTCAGAACCTCTCAAAAACTAATCTGC
ACGTGTCTAAATCTGGCTGCCATGCCAGGCGCGACATCAATCATATTCGC
CATGTTGGTCTCAAAGGGAATCCAAGAGACACGCGCCCCGCGGTACAACC
AACTGAAGACCAAATAGATTTTGTTATGCATTTATAACCAAGCATTTTAG
AAGTCATATCCTCATAATTTTTTCCTTTAGTGTTTCCAAATCTATGTATT
CTAAACGAATCGTTTCATTATCTTGTAGGCTTTTATAAACCTTTAATTTA
TTACTTGTAAACCTTTCCTCTAAGAGTCAATGCAGACATCCGACTTCGCT
GACGATTGCATCGGGACTGCATTACCCTAGGATAGACGGTCCGGTCTAGA
AGTAGCAGCAAGAGTCAGTTAAATATCAGTACCGCTATTAGCAGAAGATT
CATGGCAGTAAGATGATGTGGATGCACCGTACATAGACGTTTCAAACTGC
AGAGGATCGTTTGACCCCCGAACCAAGGCAGGGAGACCATACATACACAG
GCGGAGGCAGTGCTGACCCTCAATACATTCGAGTATTTCAACACTCTACC
TTTTACCTATATTTACTGGGCATTCAATCACCAAATTCGCATCCTGGGTC
TATTTGGAGCATATTAAGAACGAACACTACACGGCGTAGGAGCACCACAC
GATTTGGTCATTTTTATTATGAGAAGTCCTAAAATCCTCCTCGGATCATT
CCTCATTATCTGCATTTGGAGCAACAAGTAGGCTGGAGGTATCATTTCTT
CACTAAGCACCATCGATTTCACACTACTGGCTTGGGATAGCACCTAATTC
TTTACGAGTTTCGGCACTGATGACGACTTCAATCCTTGTTTCAACCCGTA
CCCCTTCGAACCAATATAAAAGTTGGATTGCATACAGCTTTCGCTTCGCT
ACACACTGGTCGATTCTTTTTCTTTGTGAGGACCCTTCGTGAGGATATTA
GATTTGTTGAAGAATGATTCTCTAACTTGGACTGCGGCGTGGGATTCAGT
CTAATTTAACCATCGACAGCGGCCTAGGAGTAAATTTGGACAGCGGCGTG
GGATTTTCGGCTCTCAAAGACGACGGCGGCGGACGTACGGATAGTTCAGA
CTGCGGCGAGGGATATCAAGTTTTTGCAACGCGGGATTATTAGGGCGTTT
AGGCCAGGGCGCTAGGAACCATATTCTTAAGACTACTGGAATTTACATCA
ATGGAGATGACTGCGGCGTGGGAGACGGAGATCGGGACTGCAGCGAGGGA
TCGAGGTTCTGGACAGCGGCGCGGGATTCTTATAAGATTGGACGGCGGCG
TGGGACCTTTTTTGACGGCAGCGTGGGAGTTTAGGACTGCAGCGCGGGAA
TTTCTGACGGCGGCGAGGGATCCTCGGTTTAATTTTTCGGCAATTGGTCA
GCCATCGCATTCCATATACATGCGTGTCACTCCATTTATTGATAGTTCAA
AGCTGATATACTTAGGTGGCGTGATCAGCGTAATCACGCCTCCAAAAATA
CGCATCCCTGATTATCCCTTATATGGAAAATCTTCATTGAATATACATTT
ATTTACACTTCTGGAATACCGGAAAGCAACCCCAATACTTATGCCGATGA
TTCTAATACATGAAACGATTTAAGATCACAATAAATTGATTTTTGAAAAG
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GH06422.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:24:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16971.a | 1844 | CG16971.a | 1180..1844 | 1..666 | 3290 | 99.8 | Plus |
CG16971.c | 1543 | CG16971.c | 879..1543 | 1..666 | 3290 | 99.8 | Plus |
nc_9600.a | 699 | nc_9600.a | 1..425 | 2106..2530 | 2125 | 100 | Plus |
nc_9600.a | 699 | nc_9600.a | 423..699 | 2872..3148 | 1385 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:02:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 227472..230919 | 803..4250 | 17240 | 100 | Plus |
chr3L | 24539361 | chr3L | 226613..227414 | 1..803 | 3965 | 99.9 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 16:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CR32477-RA | 4257 | CR32477-RA | 1..4251 | 1..4252 | 21220 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:02:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 227517..230966 | 803..4252 | 17250 | 100 | Plus |
3L | 28110227 | 3L | 226658..227459 | 1..803 | 3965 | 99.9 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 227517..230966 | 803..4252 | 17250 | 100 | Plus |
3L | 28103327 | 3L | 226658..227459 | 1..803 | 3975 | 99.8 | Plus |
Blast to na_te.dros performed on 2019-03-16 03:02:53 has no hits.
GH06422.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:03:40 Download gff for
GH06422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 226613..227414 | 1..803 | 99 | -> | Plus |
chr3L | 227473..230919 | 804..4250 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 20:40:29 has no hits.
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 16:34:46 Download gff for
GH06422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CR32477-RA | 1..4249 | 1..4250 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:00:32 Download gff for
GH06422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16971-RC | 377..585 | 113..321 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:40:30 Download gff for
GH06422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16971-RC | 377..585 | 113..321 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:40 Download gff for
GH06422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 226658..227459 | 1..803 | 99 | -> | Plus |
3L | 227518..230964 | 804..4250 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:40 Download gff for
GH06422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 226658..227459 | 1..803 | 99 | -> | Plus |
3L | 227518..230964 | 804..4250 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:40 Download gff for
GH06422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 226658..227459 | 1..803 | 99 | -> | Plus |
3L | 227518..230964 | 804..4250 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:56 Download gff for
GH06422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 226658..227459 | 1..803 | 99 | -> | Plus |
arm_3L | 227518..230964 | 804..4250 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:56 Download gff for
GH06422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 226658..227459 | 1..803 | 99 | -> | Plus |
arm_3L | 227518..230964 | 804..4250 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:56 Download gff for
GH06422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 226658..227459 | 1..803 | 99 | -> | Plus |
arm_3L | 227518..230964 | 804..4250 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:18:00 Download gff for
GH06422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 226658..227459 | 1..803 | 99 | -> | Plus |
3L | 227518..230964 | 804..4250 | 100 | | Plus |
GH06422.pep Sequence
Translation from 3800 to 4222
> GH06422.pep
MEMTAAWETEIGTAARDRGSGQRRGILIRLDGGVGPFLTAAWEFRTAARE
FLTAARDPRFNFSAIGQPSHSIYMRVTPFIDSSKLIYLGGVISVITPPKI
RIPDYPLYGKSSLNIHLFTLLEYRKATPILMPMILIHETI*
Sequence GH06422.pep has no blast hits.
GH06422.hyp Sequence
Translation from 3800 to 4222
> GH06422.hyp
MEMTAAWETEIGTAARDRGSGQRRGILIRLDGGVGPFLTAAWEFRTAARE
FLTAARDPRFNFSAIGQPSHSIYMRVTPFIDSSKLIYLGGVISVITPPKI
RIPDYPLYGKSSLNIHLFTLLEYRKATPILMPMILIHETI*
Sequence GH06422.hyp has no blast hits.