Clone GH06435 Report

Search the DGRC for GH06435

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:64
Well:35
Vector:pOT2
Associated Gene/TranscriptCG5089-RA
Protein status:GH06435.pep: gold
Preliminary Size:1719
Sequenced Size:1675

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5089 2001-01-01 Release 2 assignment
CG5089 2001-11-09 Blastp of sequenced clone
CG5089 2003-01-01 Sim4 clustering to Release 3
CG5089 2008-04-29 Release 5.5 accounting
CG5089 2008-08-15 Release 5.9 accounting
CG5089 2008-12-18 5.12 accounting

Clone Sequence Records

GH06435.complete Sequence

1675 bp (1675 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069053

> GH06435.complete
TTCAGTTCACAAAATTTCGGTCTTTAATTTTTGGAGTTAAAAATTTGTAG
CTAACAAAATTGAAAATTCAAAAATTCAGTTCGGAGTTTTATTTTCAGAC
AACACCCTCTCGTGCACGCATCAAAATTTTTAGTTCTGAAAAGGGAGTTC
AATCCAAGACGAGTCAATAGCAAGATGAATACCACTTTTAAAATGGCTCG
AACGAGCCTGAATCATTCTTGGCGGTTTGTTAGTAACAAAGCCAAGGGGC
AATTTTCCAGTTTGCGACGATTACCAGCAGTTACCAGCCAAAATCGTCGC
TACGCAGACCGATATACCTTCGACGACCAGACTCAAGCACAAATCCAGGG
CATCAAGAAGATGAAAGAGATGTCCGCGGTGCCCCGGGAGTCTCCTTGGC
GTGACAGCGAATGGTCTCCCGATTTTCCCGAGCGTTTGGATGAGTTGGGC
TACGAGTCCCACTGCAACGATCGCCTCTATATAGCCAAGAACAAAATCCG
TCACGAGCAACAAAAATATGAATTGGAACGTGAAGAGCGTCGCAAGCAGG
CCCAACGAAGAATCAATAGTCACTTCGCTAAAGGTCAGGCAGAACCGGAC
TTATTGCGCCGGCGTACCATCTCACAGGATCCGGCCGATCACCAAAGGCG
TCAGGAGGCGATTATCGAACAGAATCGCCGTCGATGGCAAAATCGTCCGG
AATCTAGGAGGGAAACTAATACCTCCGGCATTACCTATCGTCCGGTTAAG
CGAAAGGAAACGTATATTGAGGAGGATATGCAAAGGGAATCGGAGGACTA
CCAGCGCCAAAGACGCAATACAGAGAGCTCAGAGGAAGCTCAAGACAGCC
AGACAGTGGTTTACGATTCCAATCGTCCCACTGCCGATTGGTTGAGGAAG
CGCCAGGAGGAGAGCGAGGCGGAGCACTGGCATTCGTGGCACACATGCCC
ATGCTCCCGGGAGTCGGAGACCACAGAGGAGGTGAAGCCACATTTGAAGC
GCAAGAAGGTGGTTGGCATTCCGCCTGCATATCCAAGGGATTACCAACGA
CGCGGCTACCATCAGATATCCCCACCTGTGTATGCACTGAAAGCCAAGAC
TATAGTGATGATACCAAAGCGGCGACCATCTGGCATCGATAAGCAGTACC
ACAAGTTTGCCATGAAACAGGTGGCTCTATGGCAACAGGACTTCGACGCG
ATCCAGGACAACGGGCAACCACTTCAGATGCCAGGGCTGGTGCCCAAGAA
GGAGGAAGAGAAGAAGCCCAAGAGGAAGGAGGAGCGTCGATCCGTGGAAC
CGCCCCGTTTCCGAATGGTCGTCAAGAGCCGTGCTCCCGCTAGCCGTCCC
TCTACTCCCGTATTCAATTACTCCGGCCAGATGGATATGCCGCCCGCCAT
CGCCGGACCCAGTGCCTACATGGGATCTCATCGCAAATCTAATGGCGAAT
CCTGGCGCAACTTCTTAAGGGCCAGCAGCTCATAAATGGAGCTCATTTTA
CTATAGCGTTGTGAATTGCCTTTTTATCCAGAGTTAATATTTGAAAATGA
ATACTTGCTGAGCTCCTGGCAGAGTTCTGGGATATTATAGTAAAATTTAA
TATAATTGACGTTGAACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA

GH06435.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5089-RA 1668 CG5089-RA 47..1666 1..1620 8100 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12486025..12487642 1..1618 8030 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:34:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16598794..16600413 1..1620 8100 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16599993..16601612 1..1620 8100 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:22:31 has no hits.

GH06435.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:23:14 Download gff for GH06435.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12486025..12487642 1..1618 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:20:46 Download gff for GH06435.complete
Subject Subject Range Query Range Percent Splice Strand
CG5089-RA 1..1311 175..1485 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:33:40 Download gff for GH06435.complete
Subject Subject Range Query Range Percent Splice Strand
CG5089-RA 1..1311 175..1485 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:17:11 Download gff for GH06435.complete
Subject Subject Range Query Range Percent Splice Strand
CG5089-RA 1..1311 175..1485 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:01:16 Download gff for GH06435.complete
Subject Subject Range Query Range Percent Splice Strand
CG5089-RA 1..1311 175..1485 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:20:03 Download gff for GH06435.complete
Subject Subject Range Query Range Percent Splice Strand
CG5089-RA 1..1311 175..1485 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:12:52 Download gff for GH06435.complete
Subject Subject Range Query Range Percent Splice Strand
CG5089-RA 47..1664 1..1618 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:33:40 Download gff for GH06435.complete
Subject Subject Range Query Range Percent Splice Strand
CG5089-RA 47..1664 1..1618 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:17:11 Download gff for GH06435.complete
Subject Subject Range Query Range Percent Splice Strand
CG5089-RA 47..1664 1..1618 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:01:16 Download gff for GH06435.complete
Subject Subject Range Query Range Percent Splice Strand
CG5089-RA 47..1664 1..1618 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:20:03 Download gff for GH06435.complete
Subject Subject Range Query Range Percent Splice Strand
CG5089-RA 47..1664 1..1618 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:23:14 Download gff for GH06435.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16598794..16600411 1..1618 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:23:14 Download gff for GH06435.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16598794..16600411 1..1618 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:23:14 Download gff for GH06435.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16598794..16600411 1..1618 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:17:11 Download gff for GH06435.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12486299..12487916 1..1618 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:38:07 Download gff for GH06435.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16599993..16601610 1..1618 100   Plus

GH06435.pep Sequence

Translation from 174 to 1484

> GH06435.pep
MNTTFKMARTSLNHSWRFVSNKAKGQFSSLRRLPAVTSQNRRYADRYTFD
DQTQAQIQGIKKMKEMSAVPRESPWRDSEWSPDFPERLDELGYESHCNDR
LYIAKNKIRHEQQKYELEREERRKQAQRRINSHFAKGQAEPDLLRRRTIS
QDPADHQRRQEAIIEQNRRRWQNRPESRRETNTSGITYRPVKRKETYIEE
DMQRESEDYQRQRRNTESSEEAQDSQTVVYDSNRPTADWLRKRQEESEAE
HWHSWHTCPCSRESETTEEVKPHLKRKKVVGIPPAYPRDYQRRGYHQISP
PVYALKAKTIVMIPKRRPSGIDKQYHKFAMKQVALWQQDFDAIQDNGQPL
QMPGLVPKKEEEKKPKRKEERRSVEPPRFRMVVKSRAPASRPSTPVFNYS
GQMDMPPAIAGPSAYMGSHRKSNGESWRNFLRASSS*

GH06435.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11397-PA 424 GF11397-PA 1..406 1..414 834 47.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20617-PA 431 GG20617-PA 1..431 1..436 1822 82.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22713-PA 416 GH22713-PA 86..404 145..433 189 25.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5089-PA 436 CG5089-PA 1..436 1..436 2323 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21144-PA 491 GI21144-PA 103..481 146..430 212 26.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11788-PA 392 GL11788-PA 77..392 146..434 233 27.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18652-PA 392 GA18652-PA 77..392 146..434 233 27.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21712-PA 428 GM21712-PA 1..428 7..436 2019 91.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20992-PA 487 GJ20992-PA 106..477 146..430 212 26.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10650-PA 496 GK10650-PA 8..295 3..297 215 28 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11807-PA 432 GE11807-PA 1..432 1..436 1813 82.6 Plus

GH06435.hyp Sequence

Translation from 174 to 1484

> GH06435.hyp
MNTTFKMARTSLNHSWRFVSNKAKGQFSSLRRLPAVTSQNRRYADRYTFD
DQTQAQIQGIKKMKEMSAVPRESPWRDSEWSPDFPERLDELGYESHCNDR
LYIAKNKIRHEQQKYELEREERRKQAQRRINSHFAKGQAEPDLLRRRTIS
QDPADHQRRQEAIIEQNRRRWQNRPESRRETNTSGITYRPVKRKETYIEE
DMQRESEDYQRQRRNTESSEEAQDSQTVVYDSNRPTADWLRKRQEESEAE
HWHSWHTCPCSRESETTEEVKPHLKRKKVVGIPPAYPRDYQRRGYHQISP
PVYALKAKTIVMIPKRRPSGIDKQYHKFAMKQVALWQQDFDAIQDNGQPL
QMPGLVPKKEEEKKPKRKEERRSVEPPRFRMVVKSRAPASRPSTPVFNYS
GQMDMPPAIAGPSAYMGSHRKSNGESWRNFLRASSS*

GH06435.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5089-PA 436 CG5089-PA 1..436 1..436 2323 100 Plus