GH06489.complete Sequence
471 bp assembled on 2008-10-15
GenBank Submission: BT050522.1
> GH06489.complete
TATACCTGTGCGTAACCAGATTTTGTATCATTATTATTTGTCCTTTCGGC
CTGAACACATCAAAATTTGTCGTCTAGTCTCAAATTATTTCTTTTTGTTC
GGTTCAAAAACTTTTACGAATTAATCATGTGCTGCGGACCCTGTGGACCC
TGCTGCGGACCTTGCTGCGGACCCTGCTGTGGTCCATGCGGACCATGCGG
AGGAGGATGTGGACCCTGCTATGGACCGAATGTCTGCGGACCATGCTATG
CCTGTGGACCCTGTGGCGGCTGCTATTGTGGATACCCTTGCTGCTAGACA
GTTGCAACTGGCCATGTCCAAGAAGGGTTCACCAGAACACCAAGACGATA
GGATAGAACCTATCCCTATTTCATCCTCGTATTCATCTAATATTCGTGAA
CCACAAATATAGGTATTTGAGACAATAAATATGAGGTGTAAGCTTCAAAA
AAAAAAAAAAAAAAACCGGCA
GH06489.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst87F.a | 708 | Mst87F.a | 33..480 | 1..448 | 2240 | 100 | Plus |
Mst87F-RA | 753 | Mst87F-RA | 78..525 | 1..448 | 2240 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:15:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 9652082..9652421 | 448..109 | 1685 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 9652512..9652619 | 108..1 | 495 | 97.2 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:34:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13827149..13827488 | 448..109 | 1700 | 100 | Minus |
3R | 32079331 | 3R | 13827579..13827686 | 108..1 | 540 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 13567980..13568319 | 448..109 | 1700 | 100 | Minus |
3R | 31820162 | 3R | 13568410..13568517 | 108..1 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 09:15:07 has no hits.
GH06489.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:16:06 Download gff for
GH06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 9652084..9652421 | 109..446 | 99 | <- | Minus |
chr3R | 9652512..9652619 | 1..108 | 97 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:20:55 Download gff for
GH06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst87F-RA | 1..171 | 127..297 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:15:26 Download gff for
GH06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst87F-RA | 1..171 | 127..297 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:05:31 Download gff for
GH06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst87F-RA | 1..171 | 127..297 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:45 Download gff for
GH06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst87F-RA | 1..171 | 127..297 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:54:28 Download gff for
GH06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst87F-RA | 25..470 | 1..446 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:15:26 Download gff for
GH06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst87F-RA | 25..470 | 1..446 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:31 Download gff for
GH06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst87F-RA | 25..470 | 1..446 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:05:31 Download gff for
GH06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst87F-RA | 25..470 | 1..446 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:45 Download gff for
GH06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst87F-RA | 1..446 | 1..446 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:16:06 Download gff for
GH06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13827151..13827488 | 109..446 | 100 | <- | Minus |
3R | 13827579..13827686 | 1..108 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:16:06 Download gff for
GH06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13827151..13827488 | 109..446 | 100 | <- | Minus |
3R | 13827579..13827686 | 1..108 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:16:06 Download gff for
GH06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13827151..13827488 | 109..446 | 100 | <- | Minus |
3R | 13827579..13827686 | 1..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:31 Download gff for
GH06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9652873..9653210 | 109..446 | 100 | <- | Minus |
arm_3R | 9653301..9653408 | 1..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:46:17 Download gff for
GH06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13567982..13568319 | 109..446 | 100 | <- | Minus |
3R | 13568410..13568517 | 1..108 | 100 | | Minus |
GH06489.pep Sequence
Translation from 126 to 296
> GH06489.pep
MCCGPCGPCCGPCCGPCCGPCGPCGGGCGPCYGPNVCGPCYACGPCGGCY
CGYPCC*
GH06489.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:16:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG17020-PA | 56 | GG17020-PA | 1..56 | 1..56 | 209 | 100 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst87F-PB | 56 | CG17956-PB | 1..56 | 1..56 | 409 | 100 | Plus |
Mst87F-PA | 56 | CG17956-PA | 1..56 | 1..56 | 409 | 100 | Plus |
Mst84Dd-PA | 72 | CG17935-PA | 9..58 | 2..52 | 257 | 79.2 | Plus |
Mst84Dc-PB | 55 | CG17945-PB | 1..55 | 1..51 | 225 | 68.4 | Plus |
Mst84Dc-PA | 55 | CG17945-PA | 1..55 | 1..51 | 225 | 68.4 | Plus |
Mst98Cb-PA | 265 | CG18396-PA | 204..262 | 3..55 | 207 | 62.9 | Plus |
Mst84Db-PA | 74 | CG17934-PA | 1..65 | 1..56 | 202 | 55.9 | Plus |
Mst84Db-PA | 74 | CG17934-PA | 19..73 | 3..52 | 201 | 65.5 | Plus |
Mst84Da-PA | 63 | CG17946-PA | 14..63 | 7..56 | 198 | 64.9 | Plus |
Pif2-PA | 118 | CG31483-PA | 1..58 | 1..56 | 191 | 54.8 | Plus |
Mst98Ca-PA | 334 | CG11719-PA | 207..284 | 3..55 | 184 | 51.9 | Plus |
Pif2-PA | 118 | CG31483-PA | 72..117 | 2..51 | 169 | 58.8 | Plus |
Mst98Cb-PA | 265 | CG18396-PA | 172..243 | 3..56 | 168 | 52 | Plus |
Pif2-PA | 118 | CG31483-PA | 37..105 | 2..56 | 168 | 47.9 | Plus |
Mst84Da-PA | 63 | CG17946-PA | 16..62 | 2..46 | 165 | 58.2 | Plus |
Mst98Ca-PA | 334 | CG11719-PA | 264..328 | 3..55 | 161 | 49.2 | Plus |
Mst98Ca-PA | 334 | CG11719-PA | 180..250 | 3..55 | 153 | 51.4 | Plus |
CG31740-PA | 61 | CG31740-PA | 5..61 | 1..53 | 152 | 49.2 | Plus |
Mst84Dd-PA | 72 | CG17935-PA | 32..71 | 2..39 | 147 | 63.4 | Plus |
Mst84Dd-PA | 72 | CG17935-PA | 3..43 | 10..55 | 146 | 64.6 | Plus |
CG9130-PB | 517 | CG9130-PB | 240..298 | 2..54 | 146 | 52.5 | Plus |
CG9130-PA | 517 | CG9130-PA | 240..298 | 2..54 | 146 | 52.5 | Plus |
CG9130-PB | 517 | CG9130-PB | 230..289 | 3..56 | 143 | 46.9 | Plus |
CG9130-PA | 517 | CG9130-PA | 230..289 | 3..56 | 143 | 46.9 | Plus |
Mst98Ca-PA | 334 | CG11719-PA | 157..242 | 2..55 | 142 | 43.2 | Plus |
CG30430-PB | 51 | CG30430-PB | 3..44 | 6..56 | 140 | 52.9 | Plus |
CG30430-PA | 51 | CG30430-PA | 3..44 | 6..56 | 140 | 52.9 | Plus |
CG30430-PB | 51 | CG30430-PB | 1..49 | 1..45 | 131 | 53.8 | Plus |
CG30430-PA | 51 | CG30430-PA | 1..49 | 1..45 | 131 | 53.8 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:16:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM25906-PA | 56 | GM25906-PA | 1..56 | 1..56 | 204 | 98.2 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:16:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD20474-PA | 56 | GD20474-PA | 1..56 | 1..56 | 209 | 100 | Plus |
GH06489.hyp Sequence
Translation from 220 to 411
> GH06489.hyp
MDRMSADHAMPVDPVAAAIVDTLAARQLQLAMSKKGSPEHQDDRIEPIPI
SSSYSSNIREPQI*
Sequence GH06489.hyp has no blast hits.