Clone GH06546 Report

Search the DGRC for GH06546

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:65
Well:46
Vector:pOT2
Associated Gene/TranscriptCtsB1-RA
Protein status:GH06546.pep: gold
Preliminary Size:1354
Sequenced Size:1353

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10992 2001-01-01 Release 2 assignment
CG10992 2001-10-10 Blastp of sequenced clone
CG10992 2003-01-01 Sim4 clustering to Release 3
CG10992 2008-04-29 Release 5.5 accounting
CG10992 2008-08-15 Release 5.9 accounting
CG10992 2008-12-18 5.12 accounting

Clone Sequence Records

GH06546.complete Sequence

1353 bp (1353 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060640

> GH06546.complete
CATTACCCGTCCGAATTTCACGGGCAGTACGAAAACAAGAACGGAGCAGA
GAGCCCGCTTAATACGACGCGTCATTTTCCACCATTTTACTGCTGTGATT
TGTTTGAATTTTGCTGTGTCAGCGCATTGGAAATTCGTTGGACAAGAATA
ATGAATCTATTGCTCCTGGTGGCCACCGCGGCCTCCGTGGCGGCACTCAC
GTCCGGTGAGCCGTCACTGCTCTCGGATGAGTTCATCGAGGTGGTGCGCA
GTAAGGCCAAAACCTGGACGGTGGGTCGCAATTTCGATGCATCCGTAACG
GAGGGACATATTCGCCGCCTGATGGGCGTCCATCCGGATGCGCACAAGTT
CGCACTGCCCGACAAGCGTGAAGTTCTTGGCGATCTATACGTGAATAGCG
TTGACGAACTTCCCGAAGAGTTCGATTCCCGCAAGCAATGGCCAAACTGC
CCAACCATTGGCGAGATTCGCGACCAGGGTTCATGCGGCTCCTGCTGGGC
CTTTGGTGCCGTGGAAGCCATGTCCGATCGCGTGTGCATCCATTCCGGCG
GCAAGGTGAATTTCCACTTTTCGGCCGATGATCTCGTCTCCTGCTGCCAC
ACCTGCGGATTTGGCTGCAATGGCGGTTTCCCCGGCGCCGCCTGGAGCTA
CTGGACGCGCAAGGGAATCGTCAGCGGAGGACCCTACGGATCTAATCAGG
GCTGCCGTCCTTACGAGATTTCTCCCTGTGAGCACCATGTGAATGGAACC
CGACCACCATGTGCCCATGGCGGTAGAACGCCCAAGTGTTCGCACGTCTG
CCAGAGCGGTTACACCGTCGATTATGCCAAGGACAAGCACTTCGGCTCCA
AGTCGTACTCGGTGAGGCGTAATGTGCGTGAAATTCAGGAGGAGATCATG
ACCAATGGACCGGTTGAGGGCGCCTTCACCGTTTATGAGGATCTCATTCT
GTACAAGGACGGTGTCTATCAGCACGAGCATGGCAAGGAGCTGGGCGGTC
ATGCCATTCGCATTTTGGGCTGGGGCGTTTGGGGCGAGGAGAAGATTCCG
TACTGGCTAATTGGTAACTCGTGGAACACCGATTGGGGCGATCATGGTTT
CTTCCGCATCCTGCGTGGCCAGGATCATTGCGGCATCGAGAGCTCCATTT
CGGCGGGTCTGCCCAAGCTGTAAATGTTATATGTATTCCGGCATCAAGCT
GATATATCAAAACCCCTCTATTTTCTATCATCCCTCCTTTTATTTTCATT
CCGATTCGCAACTGACGTTTGTAGTTAATGTAAACAACCTAAACCTGATT
GATAATAAAGTATTGTATATGACTGTGGAACTGTAAAAAAAAAAAAAAAA
AAA

GH06546.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10992-RA 1614 CG10992-RA 141..1475 1..1335 6675 100 Plus
CG10992.a 918 CG10992.a 342..772 270..700 2155 100 Plus
CG10992.a 918 CG10992.a 103..346 1..244 1220 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13670745..13671382 1334..697 3190 100 Minus
chrX 22417052 chrX 13672537..13672808 272..1 1360 100 Minus
chrX 22417052 chrX 13672200..13672463 533..270 1320 100 Minus
chrX 22417052 chrX 13671887..13672055 700..532 845 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:34:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13780015..13780653 1335..697 3195 100 Minus
X 23542271 X 13781808..13782079 272..1 1360 100 Minus
X 23542271 X 13781471..13781734 533..270 1320 100 Minus
X 23542271 X 13781158..13781326 700..532 845 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13788113..13788751 1335..697 3195 100 Minus
X 23527363 X 13789906..13790177 272..1 1360 100 Minus
X 23527363 X 13789569..13789832 533..270 1320 100 Minus
X 23527363 X 13789256..13789424 700..532 845 100 Minus
Blast to na_te.dros performed on 2019-03-16 09:41:08 has no hits.

GH06546.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:41:47 Download gff for GH06546.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13670745..13671379 700..1334 100 <- Minus
chrX 13671888..13672055 532..699 100 <- Minus
chrX 13672202..13672462 271..531 100 <- Minus
chrX 13672539..13672808 1..270 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:21:02 Download gff for GH06546.complete
Subject Subject Range Query Range Percent Splice Strand
CG10992-RA 1..1023 151..1173 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:55:47 Download gff for GH06546.complete
Subject Subject Range Query Range Percent Splice Strand
CG10992-RA 1..1023 151..1173 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:42:01 Download gff for GH06546.complete
Subject Subject Range Query Range Percent Splice Strand
CtsB1-RA 1..1023 151..1173 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:24:54 Download gff for GH06546.complete
Subject Subject Range Query Range Percent Splice Strand
CG10992-RA 1..1023 151..1173 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:57 Download gff for GH06546.complete
Subject Subject Range Query Range Percent Splice Strand
CtsB1-RA 1..1023 151..1173 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:41:37 Download gff for GH06546.complete
Subject Subject Range Query Range Percent Splice Strand
CG10992-RA 103..1434 1..1332 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:55:47 Download gff for GH06546.complete
Subject Subject Range Query Range Percent Splice Strand
CG10992-RA 103..1434 1..1332 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:01 Download gff for GH06546.complete
Subject Subject Range Query Range Percent Splice Strand
CtsB1-RA 1..1334 1..1334 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:24:55 Download gff for GH06546.complete
Subject Subject Range Query Range Percent Splice Strand
CG10992-RA 103..1434 1..1332 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:57 Download gff for GH06546.complete
Subject Subject Range Query Range Percent Splice Strand
CtsB1-RA 92..1425 1..1334 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:41:47 Download gff for GH06546.complete
Subject Subject Range Query Range Percent Splice Strand
X 13780016..13780650 700..1334 100 <- Minus
X 13781159..13781326 532..699 100 <- Minus
X 13781473..13781733 271..531 100 <- Minus
X 13781810..13782079 1..270 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:41:47 Download gff for GH06546.complete
Subject Subject Range Query Range Percent Splice Strand
X 13780016..13780650 700..1334 100 <- Minus
X 13781159..13781326 532..699 100 <- Minus
X 13781473..13781733 271..531 100 <- Minus
X 13781810..13782079 1..270 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:41:47 Download gff for GH06546.complete
Subject Subject Range Query Range Percent Splice Strand
X 13780016..13780650 700..1334 100 <- Minus
X 13781159..13781326 532..699 100 <- Minus
X 13781473..13781733 271..531 100 <- Minus
X 13781810..13782079 1..270 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:01 Download gff for GH06546.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13674049..13674683 700..1334 100 <- Minus
arm_X 13675192..13675359 532..699 100 <- Minus
arm_X 13675506..13675766 271..531 100 <- Minus
arm_X 13675843..13676112 1..270 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:02:05 Download gff for GH06546.complete
Subject Subject Range Query Range Percent Splice Strand
X 13788114..13788748 700..1334 100 <- Minus
X 13789257..13789424 532..699 100 <- Minus
X 13789571..13789831 271..531 100 <- Minus
X 13789908..13790177 1..270 100   Minus

GH06546.hyp Sequence

Translation from 1 to 1172

> GH06546.hyp
HYPSEFHGQYENKNGAESPLNTTRHFPPFYCCDLFEFCCVSALEIRWTRI
MNLLLLVATAASVAALTSGEPSLLSDEFIEVVRSKAKTWTVGRNFDASVT
EGHIRRLMGVHPDAHKFALPDKREVLGDLYVNSVDELPEEFDSRKQWPNC
PTIGEIRDQGSCGSCWAFGAVEAMSDRVCIHSGGKVNFHFSADDLVSCCH
TCGFGCNGGFPGAAWSYWTRKGIVSGGPYGSNQGCRPYEISPCEHHVNGT
RPPCAHGGRTPKCSHVCQSGYTVDYAKDKHFGSKSYSVRRNVREIQEEIM
TNGPVEGAFTVYEDLILYKDGVYQHEHGKELGGHAIRILGWGVWGEEKIP
YWLIGNSWNTDWGDHGFFRILRGQDHCGIESSISAGLPKL*

GH06546.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
CtsB1-PC 340 CG10992-PC 1..340 51..390 1893 100 Plus
CtsB1-PA 340 CG10992-PA 1..340 51..390 1893 100 Plus
Swim-PA 431 CG3074-PA 182..420 132..388 366 35.2 Plus
Swim-PB 431 CG3074-PB 182..420 132..388 366 35.2 Plus
CG12163-PB 475 CG12163-PB 254..473 136..387 236 27.6 Plus

GH06546.pep Sequence

Translation from 150 to 1172

> GH06546.pep
MNLLLLVATAASVAALTSGEPSLLSDEFIEVVRSKAKTWTVGRNFDASVT
EGHIRRLMGVHPDAHKFALPDKREVLGDLYVNSVDELPEEFDSRKQWPNC
PTIGEIRDQGSCGSCWAFGAVEAMSDRVCIHSGGKVNFHFSADDLVSCCH
TCGFGCNGGFPGAAWSYWTRKGIVSGGPYGSNQGCRPYEISPCEHHVNGT
RPPCAHGGRTPKCSHVCQSGYTVDYAKDKHFGSKSYSVRRNVREIQEEIM
TNGPVEGAFTVYEDLILYKDGVYQHEHGKELGGHAIRILGWGVWGEEKIP
YWLIGNSWNTDWGDHGFFRILRGQDHCGIESSISAGLPKL*

GH06546.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22391-PA 342 GF22391-PA 3..341 4..340 1484 80.3 Plus
Dana\GF12327-PA 431 GF12327-PA 180..419 81..338 337 34.2 Plus
Dana\GF16067-PA 620 GF16067-PA 399..619 86..337 214 28.6 Plus
Dana\GF13722-PA 417 GF13722-PA 200..416 87..337 213 30.7 Plus
Dana\GF13132-PA 392 GF13132-PA 176..385 87..331 197 25.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19486-PA 340 GG19486-PA 1..340 1..340 1742 94.1 Plus
Dere\GG20712-PA 431 GG20712-PA 127..420 23..338 338 30.9 Plus
Dere\GG20691-PA 378 GG20691-PA 131..374 54..334 228 27.7 Plus
Dere\GG11133-PA 615 GG11133-PA 394..614 86..337 226 29.4 Plus
Dere\GG20414-PA 341 GG20414-PA 124..340 87..337 215 29.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17748-PA 340 GH17748-PA 1..340 1..340 1413 75.2 Plus
Dgri\GH20676-PA 432 GH20676-PA 181..423 81..340 356 34.6 Plus
Dgri\GH22731-PA 617 GH22731-PA 396..616 86..337 227 30.2 Plus
Dgri\GH23906-PA 358 GH23906-PA 143..354 87..334 214 27.5 Plus
Dgri\GH21411-PA 391 GH21411-PA 176..387 87..334 214 27.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
CtsB1-PC 340 CG10992-PC 1..340 1..340 1893 100 Plus
CtsB1-PA 340 CG10992-PA 1..340 1..340 1893 100 Plus
Swim-PA 431 CG3074-PA 182..420 82..338 366 35.2 Plus
Swim-PB 431 CG3074-PB 182..420 82..338 366 35.2 Plus
CG12163-PB 475 CG12163-PB 254..473 86..337 236 27.6 Plus
CG12163-PA 614 CG12163-PA 393..612 86..337 236 27.6 Plus
CG4847-PE 390 CG4847-PE 173..386 87..334 228 28.1 Plus
CG4847-PC 390 CG4847-PC 173..386 87..334 228 28.1 Plus
CG4847-PA 390 CG4847-PA 173..386 87..334 228 28.1 Plus
CG4847-PD 420 CG4847-PD 203..416 87..334 228 28.1 Plus
CG6347-PA 352 CG6347-PA 130..348 87..334 191 29.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15503-PA 342 GI15503-PA 23..342 20..340 1470 83.5 Plus
Dmoj\GI19039-PA 432 GI19039-PA 127..422 23..340 348 31.8 Plus
Dmoj\GI18587-PA 366 GI18587-PA 89..362 24..334 233 26.8 Plus
Dmoj\GI10216-PA 605 GI10216-PA 384..604 86..337 226 31.2 Plus
Dmoj\GI21205-PA 339 GI21205-PA 121..338 86..337 214 29.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19846-PA 329 GL19846-PA 1..329 1..340 1467 80.9 Plus
Dper\GL16940-PA 433 GL16940-PA 172..422 70..338 331 33.3 Plus
Dper\GL22196-PA 627 GL22196-PA 406..626 86..337 230 30.2 Plus
Dper\GL11434-PA 372 GL11434-PA 156..363 87..329 225 28.9 Plus
Dper\GL17172-PA 341 GL17172-PA 124..340 87..337 212 29.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10694-PA 338 GA10694-PA 1..338 1..340 1554 84.4 Plus
Dpse\GA15908-PA 433 GA15908-PA 172..422 70..338 331 33.3 Plus
Dpse\GA27408-PA 629 GA27408-PA 408..628 86..337 230 30.2 Plus
Dpse\GA27408-PB 477 GA27408-PB 256..476 86..337 228 30.2 Plus
Dpse\GA18475-PA 372 GA18475-PA 156..363 87..329 227 29.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17589-PA 340 GM17589-PA 1..340 1..340 1769 96.8 Plus
Dsec\GM15657-PA 431 GM15657-PA 127..420 23..338 345 32.1 Plus
Dsec\GM10654-PA 615 GM10654-PA 394..614 86..337 236 29.4 Plus
Dsec\GM21790-PA 382 GM21790-PA 135..378 54..334 213 28 Plus
Dsec\GM21500-PA 341 GM21500-PA 73..340 38..337 210 28.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15875-PA 340 GD15875-PA 1..340 1..340 1784 97.6 Plus
Dsim\GD25141-PA 484 GD25141-PA 127..420 23..338 345 32.1 Plus
Dsim\GD11280-PA 382 GD11280-PA 135..378 54..334 223 27.7 Plus
Dsim\GD10995-PA 341 GD10995-PA 73..340 38..337 210 28.3 Plus
Dsim\GD10987-PA 352 GD10987-PA 130..348 87..334 186 29.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19262-PA 338 GJ19262-PA 1..338 1..340 1477 79.4 Plus
Dvir\GJ20006-PA 432 GJ20006-PA 127..421 23..338 364 31.6 Plus
Dvir\GJ20385-PA 370 GJ20385-PA 102..366 33..334 246 27.8 Plus
Dvir\GJ11017-PA 599 GJ11017-PA 378..597 86..337 234 30.3 Plus
Dvir\GJ20806-PA 339 GJ20806-PA 121..338 86..337 208 28.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16352-PA 340 GK16352-PA 7..340 2..340 1439 78.8 Plus
Dwil\GK24603-PA 341 GK24603-PA 8..341 3..340 1069 56.6 Plus
Dwil\GK20838-PA 432 GK20838-PA 129..421 23..338 337 32.3 Plus
Dwil\GK14287-PA 610 GK14287-PA 389..608 86..337 238 28.6 Plus
Dwil\GK22909-PA 370 GK22909-PA 154..361 87..329 222 28.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16138-PA 340 GE16138-PA 1..340 1..340 1776 96.8 Plus
Dyak\GE11695-PA 431 GE11695-PA 127..420 23..338 348 31.7 Plus
Dyak\GE25302-PA 615 GE25302-PA 394..614 86..337 233 29.4 Plus
Dyak\GE12574-PA 341 GE12574-PA 73..340 38..337 214 28.7 Plus
Dyak\GE11675-PA 384 GE11675-PA 167..380 87..334 212 27.6 Plus