Clone GH06596 Report

Search the DGRC for GH06596

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:65
Well:96
Vector:pOT2
Associated Gene/Transcriptstil-RA
Protein status:GH06596.pep: gold
Preliminary Size:1265
Sequenced Size:1140

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8592 2001-01-01 Release 2 assignment
CG8592 2002-01-03 Blastp of sequenced clone
CG8592 2003-01-01 Sim4 clustering to Release 3
stil 2008-04-29 Release 5.5 accounting
stil 2008-08-15 Release 5.9 accounting
stil 2008-12-18 5.12 accounting

Clone Sequence Records

GH06596.complete Sequence

1140 bp (1140 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075316

> GH06596.complete
AGCAGGTTCATTCCCATTTATGAAACTGAAAAATGTCCGTAAACTTGGAC
GGTTCTGAAGAAAAGATGGAGCTGAAAAAGCATGTGCCGTACATCCTGAA
CGGGGAACTGTATCGCATCGAGAAGCAGGTGGGCGACAATGTTACGGTCA
AGTGCTGCTACTGTCCGCCGGATCGGATTTATCGCGGCAGTGTCCGCTCC
ACCGGGAACTTTCACATGCACATCAAGAGACGTCATAGTTCCTTGTTGGG
CAAACTCCATGAAATGAAGGTGGCTGCACTGGAAGAACGCCGTGATCGGA
TCATGAAAAACCGACGCTTTGCCAAGTCGCGCAAGAAGGCACCAGTTGCG
GTTGCAGCCACAAGTACAGCTGCGCAGAGCGATTCCGGGGTGTTCGTGGA
CATGCAAGCTGCTGTTCCGTCTGGAAACGAAAGCCACGAGCTGAAAATCA
AAACGGTTTTTCAGCGCCACAAGCAAGAGCAGGAGGGAGCTACCCGCAAG
CTCGAAGATTCCACTTCAGATAAAGCTAATCTACCAAATATCCCTAAGAA
CTTGGGAATTGTCGTTCAGAACGTCTCAAACATCTCGGTGGAAACACTGC
CCGGCGGTTCGACTCCTGCCAGTGTCTCCTTTCTGGGTCGTCCTGTCAAG
CCTGAGCAGGGTAGTGGTCCGTCATTCCTGGCTGATCAGCCGGCTGCCAT
AGATTTGAGCCAGGTTCCACCAGTGCAGGGCGAGAGTAAATCCAGTGGAT
CGCTGGCTTCATCGATGGAGGACGTCTCCATGGAGTACTCACGCTCCCAG
GCCCTCTCACAATCGCTATCCATGGCCCACTTCTTGGAGCATCCTCAGCG
AGATGTGCTGCAGCGCCTGGAGCGCTCGATGGCCCAAATAAGTCAGGAGT
TGCACTGCCGCAACCGCATCGAGCACAACCGCATGTTGTTGGAGGCAGCC
AAGTTCAAGTTTCTAAATCCGAATTTTCAGTTTGAGCCGAATCTGTAAGA
GGCTCAATAAGGAAACCAACTAGACTCCGCGCCAGATTCTGAATCCAAAC
CAAATGGCAAAACGTTCAAAAACAATGCATTGATAAAAGACTAAGGCTGT
CCTAAATATATTTCTAAAATTAAAAAAAAAAAAAAAAAAA

GH06596.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
stil-RA 1425 stil-RA 214..1337 1..1124 5620 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8458608..8459156 573..1121 2745 100 Plus
chr2R 21145070 chr2R 8457991..8458265 226..500 1375 100 Plus
chr2R 21145070 chr2R 8457690..8457916 1..227 1135 100 Plus
chr2R 21145070 chr2R 8458416..8458491 499..574 380 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:35:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12571335..12571886 573..1124 2760 100 Plus
2R 25286936 2R 12570718..12570992 226..500 1375 100 Plus
2R 25286936 2R 12570417..12570643 1..227 1135 100 Plus
2R 25286936 2R 12571143..12571218 499..574 380 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12572534..12573085 573..1124 2760 100 Plus
2R 25260384 2R 12571917..12572191 226..500 1375 100 Plus
2R 25260384 2R 12571616..12571842 1..227 1135 100 Plus
2R 25260384 2R 12572342..12572417 499..574 380 100 Plus
Blast to na_te.dros performed on 2019-03-16 15:08:28 has no hits.

GH06596.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:09:21 Download gff for GH06596.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8457690..8457916 1..227 100 -> Plus
chr2R 8457993..8458265 228..500 100 -> Plus
chr2R 8458418..8458489 501..572 100 -> Plus
chr2R 8458608..8459156 573..1121 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:21:05 Download gff for GH06596.complete
Subject Subject Range Query Range Percent Splice Strand
stil-RA 1..966 33..998 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:57:05 Download gff for GH06596.complete
Subject Subject Range Query Range Percent Splice Strand
stil-RA 1..966 33..998 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:04:46 Download gff for GH06596.complete
Subject Subject Range Query Range Percent Splice Strand
stil-RA 1..966 33..998 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:21:54 Download gff for GH06596.complete
Subject Subject Range Query Range Percent Splice Strand
stil-RA 1..966 33..998 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:36:34 Download gff for GH06596.complete
Subject Subject Range Query Range Percent Splice Strand
stil-RA 1..966 33..998 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:21:34 Download gff for GH06596.complete
Subject Subject Range Query Range Percent Splice Strand
stil-RA 62..1182 1..1121 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:57:05 Download gff for GH06596.complete
Subject Subject Range Query Range Percent Splice Strand
stil-RA 62..1182 1..1121 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:46 Download gff for GH06596.complete
Subject Subject Range Query Range Percent Splice Strand
stil-RA 51..1171 1..1121 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:21:54 Download gff for GH06596.complete
Subject Subject Range Query Range Percent Splice Strand
stil-RA 62..1182 1..1121 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:34 Download gff for GH06596.complete
Subject Subject Range Query Range Percent Splice Strand
stil-RA 51..1171 1..1121 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:09:21 Download gff for GH06596.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12570417..12570643 1..227 100 -> Plus
2R 12570720..12570992 228..500 100 -> Plus
2R 12571145..12571216 501..572 100 -> Plus
2R 12571335..12571883 573..1121 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:09:21 Download gff for GH06596.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12570417..12570643 1..227 100 -> Plus
2R 12570720..12570992 228..500 100 -> Plus
2R 12571145..12571216 501..572 100 -> Plus
2R 12571335..12571883 573..1121 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:09:21 Download gff for GH06596.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12570417..12570643 1..227 100 -> Plus
2R 12570720..12570992 228..500 100 -> Plus
2R 12571145..12571216 501..572 100 -> Plus
2R 12571335..12571883 573..1121 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:46 Download gff for GH06596.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8457922..8458148 1..227 100 -> Plus
arm_2R 8458225..8458497 228..500 100 -> Plus
arm_2R 8458650..8458721 501..572 100 -> Plus
arm_2R 8458840..8459388 573..1121 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:56:44 Download gff for GH06596.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12571616..12571842 1..227 100 -> Plus
2R 12571919..12572191 228..500 100 -> Plus
2R 12572344..12572415 501..572 100 -> Plus
2R 12572534..12573082 573..1121 100   Plus

GH06596.hyp Sequence

Translation from 32 to 997

> GH06596.hyp
MSVNLDGSEEKMELKKHVPYILNGELYRIEKQVGDNVTVKCCYCPPDRIY
RGSVRSTGNFHMHIKRRHSSLLGKLHEMKVAALEERRDRIMKNRRFAKSR
KKAPVAVAATSTAAQSDSGVFVDMQAAVPSGNESHELKIKTVFQRHKQEQ
EGATRKLEDSTSDKANLPNIPKNLGIVVQNVSNISVETLPGGSTPASVSF
LGRPVKPEQGSGPSFLADQPAAIDLSQVPPVQGESKSSGSLASSMEDVSM
EYSRSQALSQSLSMAHFLEHPQRDVLQRLERSMAQISQELHCRNRIEHNR
MLLEAAKFKFLNPNFQFEPNL*

GH06596.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
stil-PA 321 CG8592-PA 1..321 1..321 1635 100 Plus

GH06596.pep Sequence

Translation from 32 to 997

> GH06596.pep
MSVNLDGSEEKMELKKHVPYILNGELYRIEKQVGDNVTVKCCYCPPDRIY
RGSVRSTGNFHMHIKRRHSSLLGKLHEMKVAALEERRDRIMKNRRFAKSR
KKAPVAVAATSTAAQSDSGVFVDMQAAVPSGNESHELKIKTVFQRHKQEQ
EGATRKLEDSTSDKANLPNIPKNLGIVVQNVSNISVETLPGGSTPASVSF
LGRPVKPEQGSGPSFLADQPAAIDLSQVPPVQGESKSSGSLASSMEDVSM
EYSRSQALSQSLSMAHFLEHPQRDVLQRLERSMAQISQELHCRNRIEHNR
MLLEAAKFKFLNPNFQFEPNL*

GH06596.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13395-PA 323 GF13395-PA 13..323 3..321 923 60.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20317-PA 327 GG20317-PA 1..327 1..321 1443 87.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22037-PA 383 GH22037-PA 27..380 15..318 663 44.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
stil-PA 321 CG8592-PA 1..321 1..321 1635 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19124-PA 316 GI19124-PA 25..313 13..318 727 50.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21305-PA 359 GL21305-PA 12..359 8..321 751 49.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21188-PA 359 GA21188-PA 12..359 8..321 742 48.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21404-PA 324 GM21404-PA 1..324 1..321 1568 94.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10901-PA 324 GD10901-PA 1..324 1..321 1586 94.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22256-PA 370 GJ22256-PA 25..367 13..318 703 46 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23151-PA 303 GK23151-PA 6..303 5..318 673 47.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12476-PA 330 GE12476-PA 1..330 1..321 1472 87.6 Plus