Clone GH06635 Report

Search the DGRC for GH06635

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:66
Well:35
Vector:pOT2
Associated Gene/TranscriptCG3815-RA
Protein status:GH06635.pep: gold
Preliminary Size:2200
Sequenced Size:3187

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3815 2001-01-01 Release 2 assignment
CG3815 2001-11-29 Blastp of sequenced clone
CG3815 2003-01-01 Sim4 clustering to Release 3
CG3815 2008-04-29 Release 5.5 accounting
CG3815 2008-08-15 Release 5.9 accounting
CG3815 2008-12-18 5.12 accounting

Clone Sequence Records

GH06635.complete Sequence

3187 bp (3187 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069054

> GH06635.complete
TCGCTCCGAGATTGATTGTGTACACCGGATAAGAGGAGCGAGCGAAAAAG
ATGTCAAAATTGGACCAGGACCCGAACGCCTCACTGAGCATCATGGAGCA
AATCAAGCAGCTCATCCGCCCGCCGCCCAACGAGGACGAGAAGATGATGC
AGCGGTCCACCAACACGAAGCATCCGTACTACAGGCGCCCGGGCAGGGGC
CACAACCACGACTATTGTGACGCCTGCGAGGAGGGCGGCAATCTGCTGTG
CTGCGATCGATGCCCCTCCAGCTTCCACCTGCAATGCCATGATCCACCGT
TGAGCGAGGAGGACATACCCAGTGGCCAGTGGCTGTGCCACAGCTGTCGC
ATGAGCAAGCTCTCCCAGCCGCCGGCCTCCTCATCCAAGGCCAGTTCCGT
GGAGCGTGTGCCTTCGGCGGGCAGTGGCTCACGGGCGAATACTCCATCGT
CTGGCGATCTGGAGTCCATACCGCTGAAGATCCGCAACCTGCGCAAACGC
AGCAACAGCGAACGCAATAGCACCGAGAAGCTGCTGGCCAAAATGCCGAT
GTCCATACAGCGCGCCCTCGATCCGAACAAGAAGCCAACGCCGCTGGACG
ATGTCATCAGGGCGGCCACCATGATGAATCCGCAGCAATTCTCGCTGCCG
CCGGAGCTCGAGCTGCACACCCAGTTCCCGGGCAATGGCAAGGTGCAACC
CGTACAGCAGACGCATCCGCCGAGCGGAAATGGCGGTAATCGCAGATGCG
CCGGCAATCAGCGACGCAACTCCAAGCCGTTTGAGCTGGATGCCCAGGGA
CTGGTGCCGCTGCCCGCCAAAACCTGTTTCTACTGCACGCGCTCCTGCAA
ACGGGCGCCGCTCATCTCCTGCGACTACTGTCCGCTCTACTTTCACCAGG
ATTGCCTGGATCCGCCACTGACGGCACTGCCAGCTGGATTGTGGATGTGC
CCCAATCATGCCGAGAATTTTATCGATGCCAATATGACCAATAGCATTTC
GGCCACGGAGCGGGTGCGTCTCTGGAATCGCTTCCACCAGCCACTTGACC
ATGAAAATGTCAAGCTTGAGTTCTTCCGGCGTGTCAACACGCGCAATCCG
CCCTTTCGCACCAAGAGAAATCTGCGTGCTCGCGCCCACATCGAGGTGCC
AGCCATTGTGCGCTACCACTACGATCATCCGCCGCCGCTGTTGCCCTCCA
TGCGCCAAACGTTGCGCTACGATCGGGTAAAGCGGCGCAATAACCTGCCC
ACCGAAGTCGAGGAGATATCCCGTGAGTCGGTCACCGAATCGCTGCTCAA
GGATCTGGAGGCCTTGCGCACGGCTCACGCCAAATTCCGTGAGATTCAGA
GGGAATTCGGAACCTTGGAGACGGCCATAGATGGCGATAGCGACAGCGAT
CCCAGTCCTGAAGAGAAAAGGACCGAGACGAACACTCCCGCCGATAAAGT
GAATGGCGAAGTGGATACGGAGAATCCCAATACAGAATCGAATGCGCAGG
CCAGCGAACAGCCGTCGGTTGTCAAGGTGGAGTCCAAGACCAGCCTAGAG
GTGGAGGCTAGCTTCGAGGAGGACGAGGAGGACAGCAAGAAATCAACGGG
TATTATCGATGCAGACCTCTTACACCTGGACGTCGATATAATCAAGAAGC
TGGCGCACCAGCGTCTGCAGCAGCTGGTCGAAGAGCATCCGGAGATTGTG
ACACAGTACAAGAATCGCACGGCCGCTCGTCGCCTGCGTCAACTGGCGTC
AGTCGATGGCACACATGTGGCTGGCGAAACTGCTGCCCTGCAAGGCCAAC
TGGCGCCGGAGGATATGAACCGTTTCTCGCTGCTCTTCACCAGCGAAACG
TCCTCAATTCTGGCGCAAAAGAATGGCAATGCCGCCGACGAAGATCCCGC
AACGGCCCTGCATCCGGCACTGGCCACAGCGGCGGCCATTGCAGCAGCAG
ATGCCGCTGCCGAAAGCTATGCGCCGCGTGCCCGTAGCGACACGGAGAAG
GCATACGAGCTGGCATCGCGCCTGGAGCTCAAGCTGCTGCAGTGCAAAGT
GCAGGCGCGTGCGGTGATAACGCCACTGGGCGACATGCTCGAGGATAGCC
GCTGGTTCAGTTCGCTGGGGCTGGACCATTCGATTTTCATGCGCTACCGC
ACGCTGTACATTGGCTACGGTGGACACTATTCGCCATCGACGACGCTGGC
GCAAACGGAGACCGTGGACCTGTCGGCCATTGGTTACTGTTGTCGCATTT
CACCGCAGCACGCCATCATCTTCTACGACGAATTCTCCAAGTCGTACGAG
CTGATCAATTACTCAGAGTTTGGCACCGAGGTGAATGGACAGCTGTATGC
CTGCGACGTGACCGAAAGGATGACAACGCACGCCGGCAAGCCGATGCGAC
CTGACGATGCGGAGCTGAAGAAGCGCGTCGATGAGATGCTGGACAAGCGT
CGGAACATTAATCGCCAGTTCGAGACGAAGAAAATCGACAAAGAACGATT
GGCGCCCATTGTTAAGCCCGCCTGCCGCTGCATGAACGCCGGACCAGTGC
CCATGGTGGATGGCGCCTGGGAGGGATCGGCGGTGCTGGCTCACGGCAGC
CTGCTGCGATTCGGTTGCCTGTCGTTTGTGTTTGTCGTGCCGTCGGTGGA
TCTGCTGCAGGCGCAGGCGCGCAGCAAGCGTTCGTAGAACCAGTACCCAG
ACTCCATCAGCAGAAGCAGCAGCCTTTAGTTTAAGCATTAAGACACAGAA
ACATATACGCGCTCAACCGCAGCCAACTCCAGTGGAGCAGCACCAATCTC
AGTGGGGCAGCTAGCAGCCAGGCATAGGGTTAGGGTTAGCAGATACCAGT
TCAACTTCATCGCATCAATCATCGCAATGCAAAGCCTCGGCAGTACTTTT
AAATCACACAATCCTCCAATCCCATCCAGCATTAAGGGTATATATTTGCC
TTATGACCAGTGCAATAAATACGGAGTACAAACCACGGATGTGCACGGCT
GCAGGCTGATCCATGCCAGTGGGCAGTGGATCTCTGGTATCAAACGCCGT
ATTTATTGAATTAACCATTACGTTCATAAATCGCATAAACCCGCATCGCA
TACTTTACTTTTATTGTAAAAACAGATGTATAAATTGCTAAAACGAAATA
AACTTGTAAGATCAGAAAAAAAAAAAAAAAAAAAAAA

GH06635.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3815-RA 3247 CG3815-RA 66..3231 1..3166 15830 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6188889..6190411 975..2497 7525 99.6 Plus
chrX 22417052 chrX 6188144..6188829 290..975 3340 99.1 Plus
chrX 22417052 chrX 6190482..6191151 2497..3165 3300 99.9 Plus
chrX 22417052 chrX 6187888..6188080 97..289 950 99.5 Plus
chrX 22417052 chrX 6187636..6187733 1..98 490 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:35:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6296709..6298231 975..2497 7615 100 Plus
X 23542271 X 6295964..6296649 290..975 3430 100 Plus
X 23542271 X 6298302..6298971 2497..3166 3350 100 Plus
X 23542271 X 6295708..6295900 97..289 965 100 Plus
X 23542271 X 6295456..6295553 1..98 490 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6304807..6306329 975..2497 7615 100 Plus
X 23527363 X 6304062..6304747 290..975 3430 100 Plus
X 23527363 X 6306400..6307069 2497..3166 3350 100 Plus
X 23527363 X 6303806..6303998 97..289 965 100 Plus
X 23527363 X 6303554..6303651 1..98 490 100 Plus
Blast to na_te.dros performed on 2019-03-15 19:26:28 has no hits.

GH06635.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:27:20 Download gff for GH06635.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6187636..6187733 1..98 100 -> Plus
chrX 6187890..6188080 99..289 99 -> Plus
chrX 6188144..6188828 290..974 99 -> Plus
chrX 6188889..6190411 975..2497 99 -> Plus
chrX 6190483..6191151 2498..3165 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:21:07 Download gff for GH06635.complete
Subject Subject Range Query Range Percent Splice Strand
CG3815-RA 1..2637 51..2687 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:27:09 Download gff for GH06635.complete
Subject Subject Range Query Range Percent Splice Strand
CG3815-RA 1..2637 51..2687 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:11:32 Download gff for GH06635.complete
Subject Subject Range Query Range Percent Splice Strand
CG3815-RA 1..2637 51..2687 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:54:36 Download gff for GH06635.complete
Subject Subject Range Query Range Percent Splice Strand
CG3815-RA 1..2637 51..2687 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:13 Download gff for GH06635.complete
Subject Subject Range Query Range Percent Splice Strand
CG3815-RA 1..2637 51..2687 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:03:53 Download gff for GH06635.complete
Subject Subject Range Query Range Percent Splice Strand
CG3815-RA 66..3230 1..3165 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:27:08 Download gff for GH06635.complete
Subject Subject Range Query Range Percent Splice Strand
CG3815-RA 66..3230 1..3165 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:11:32 Download gff for GH06635.complete
Subject Subject Range Query Range Percent Splice Strand
CG3815-RA 68..3232 1..3165 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:54:36 Download gff for GH06635.complete
Subject Subject Range Query Range Percent Splice Strand
CG3815-RA 66..3230 1..3165 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:13 Download gff for GH06635.complete
Subject Subject Range Query Range Percent Splice Strand
CG3815-RA 68..3232 1..3165 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:27:20 Download gff for GH06635.complete
Subject Subject Range Query Range Percent Splice Strand
X 6295456..6295553 1..98 100 -> Plus
X 6295710..6295900 99..289 100 -> Plus
X 6295964..6296648 290..974 100 -> Plus
X 6296709..6298231 975..2497 100 -> Plus
X 6298303..6298970 2498..3165 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:27:20 Download gff for GH06635.complete
Subject Subject Range Query Range Percent Splice Strand
X 6295456..6295553 1..98 100 -> Plus
X 6295710..6295900 99..289 100 -> Plus
X 6295964..6296648 290..974 100 -> Plus
X 6296709..6298231 975..2497 100 -> Plus
X 6298303..6298970 2498..3165 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:27:20 Download gff for GH06635.complete
Subject Subject Range Query Range Percent Splice Strand
X 6295456..6295553 1..98 100 -> Plus
X 6295710..6295900 99..289 100 -> Plus
X 6295964..6296648 290..974 100 -> Plus
X 6296709..6298231 975..2497 100 -> Plus
X 6298303..6298970 2498..3165 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:11:32 Download gff for GH06635.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6189489..6189586 1..98 100 -> Plus
arm_X 6189743..6189933 99..289 100 -> Plus
arm_X 6189997..6190681 290..974 100 -> Plus
arm_X 6190742..6192264 975..2497 100 -> Plus
arm_X 6192336..6193003 2498..3165 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:30:42 Download gff for GH06635.complete
Subject Subject Range Query Range Percent Splice Strand
X 6304062..6304746 290..974 100 -> Plus
X 6304807..6306329 975..2497 100 -> Plus
X 6306401..6307068 2498..3165 100   Plus
X 6303554..6303651 1..98 100 -> Plus
X 6303808..6303998 99..289 100 -> Plus

GH06635.pep Sequence

Translation from 50 to 2686

> GH06635.pep
MSKLDQDPNASLSIMEQIKQLIRPPPNEDEKMMQRSTNTKHPYYRRPGRG
HNHDYCDACEEGGNLLCCDRCPSSFHLQCHDPPLSEEDIPSGQWLCHSCR
MSKLSQPPASSSKASSVERVPSAGSGSRANTPSSGDLESIPLKIRNLRKR
SNSERNSTEKLLAKMPMSIQRALDPNKKPTPLDDVIRAATMMNPQQFSLP
PELELHTQFPGNGKVQPVQQTHPPSGNGGNRRCAGNQRRNSKPFELDAQG
LVPLPAKTCFYCTRSCKRAPLISCDYCPLYFHQDCLDPPLTALPAGLWMC
PNHAENFIDANMTNSISATERVRLWNRFHQPLDHENVKLEFFRRVNTRNP
PFRTKRNLRARAHIEVPAIVRYHYDHPPPLLPSMRQTLRYDRVKRRNNLP
TEVEEISRESVTESLLKDLEALRTAHAKFREIQREFGTLETAIDGDSDSD
PSPEEKRTETNTPADKVNGEVDTENPNTESNAQASEQPSVVKVESKTSLE
VEASFEEDEEDSKKSTGIIDADLLHLDVDIIKKLAHQRLQQLVEEHPEIV
TQYKNRTAARRLRQLASVDGTHVAGETAALQGQLAPEDMNRFSLLFTSET
SSILAQKNGNAADEDPATALHPALATAAAIAAADAAAESYAPRARSDTEK
AYELASRLELKLLQCKVQARAVITPLGDMLEDSRWFSSLGLDHSIFMRYR
TLYIGYGGHYSPSTTLAQTETVDLSAIGYCCRISPQHAIIFYDEFSKSYE
LINYSEFGTEVNGQLYACDVTERMTTHAGKPMRPDDAELKKRVDEMLDKR
RNINRQFETKKIDKERLAPIVKPACRCMNAGPVPMVDGAWEGSAVLAHGS
LLRFGCLSFVFVVPSVDLLQAQARSKRS*

GH06635.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21258-PA 876 GF21258-PA 1..874 1..877 4000 86.2 Plus
Dana\GF24755-PA 2758 GF24755-PA 339..391 51..105 161 43.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19583-PA 876 GG19583-PA 1..876 1..878 4286 92.8 Plus
Dere\GG14675-PA 2572 GG14675-PA 339..391 51..105 163 45.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24800-PA 887 GH24800-PA 1..879 1..869 3500 76.4 Plus
Dgri\GH15750-PA 2706 GH15750-PA 338..390 51..105 158 43.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3815-PA 878 CG3815-PA 1..878 1..878 4615 100 Plus
Chd3-PA 892 CG9594-PA 14..79 26..99 165 40.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15065-PA 886 GI15065-PA 1..877 1..868 3619 79.3 Plus
Dmoj\GI12529-PA 2881 GI12529-PA 337..389 51..105 162 45.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14444-PA 899 GL14444-PA 7..813 69..875 3129 75.4 Plus
Dper\GL16133-PA 2502 GL16133-PA 338..390 51..105 160 45.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17705-PA 951 GA17705-PA 1..876 1..877 3504 76.9 Plus
Dpse\GA16840-PA 2716 GA16840-PA 338..390 51..105 162 45.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12479-PA 876 GM12479-PA 1..876 1..878 4602 97 Plus
Dsec\GM14291-PA 1421 GM14291-PA 337..389 51..105 161 45.5 Plus
Dsec\Chd3-PA 882 GM19418-PA 35..80 52..99 157 50 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24366-PA 255 GD24366-PA 1..243 165..408 1309 98 Plus
Dsim\GD16794-PA 80 GD16794-PA 1..79 1..79 443 100 Plus
Dsim\Chd3-PA 893 GD14801-PA 35..80 52..99 157 50 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14859-PA 884 GJ14859-PA 1..884 1..877 3618 79.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24911-PA 884 GK24911-PA 1..879 1..868 3580 78.7 Plus
Dwil\GK17657-PA 2728 GK17657-PA 346..398 51..105 162 45.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16742-PA 268 GE16742-PA 62..268 656..878 993 85.7 Plus
Dyak\GE21036-PA 2414 GE21036-PA 339..391 51..105 162 45.5 Plus

GH06635.hyp Sequence

Translation from 50 to 2686

> GH06635.hyp
MSKLDQDPNASLSIMEQIKQLIRPPPNEDEKMMQRSTNTKHPYYRRPGRG
HNHDYCDACEEGGNLLCCDRCPSSFHLQCHDPPLSEEDIPSGQWLCHSCR
MSKLSQPPASSSKASSVERVPSAGSGSRANTPSSGDLESIPLKIRNLRKR
SNSERNSTEKLLAKMPMSIQRALDPNKKPTPLDDVIRAATMMNPQQFSLP
PELELHTQFPGNGKVQPVQQTHPPSGNGGNRRCAGNQRRNSKPFELDAQG
LVPLPAKTCFYCTRSCKRAPLISCDYCPLYFHQDCLDPPLTALPAGLWMC
PNHAENFIDANMTNSISATERVRLWNRFHQPLDHENVKLEFFRRVNTRNP
PFRTKRNLRARAHIEVPAIVRYHYDHPPPLLPSMRQTLRYDRVKRRNNLP
TEVEEISRESVTESLLKDLEALRTAHAKFREIQREFGTLETAIDGDSDSD
PSPEEKRTETNTPADKVNGEVDTENPNTESNAQASEQPSVVKVESKTSLE
VEASFEEDEEDSKKSTGIIDADLLHLDVDIIKKLAHQRLQQLVEEHPEIV
TQYKNRTAARRLRQLASVDGTHVAGETAALQGQLAPEDMNRFSLLFTSET
SSILAQKNGNAADEDPATALHPALATAAAIAAADAAAESYAPRARSDTEK
AYELASRLELKLLQCKVQARAVITPLGDMLEDSRWFSSLGLDHSIFMRYR
TLYIGYGGHYSPSTTLAQTETVDLSAIGYCCRISPQHAIIFYDEFSKSYE
LINYSEFGTEVNGQLYACDVTERMTTHAGKPMRPDDAELKKRVDEMLDKR
RNINRQFETKKIDKERLAPIVKPACRCMNAGPVPMVDGAWEGSAVLAHGS
LLRFGCLSFVFVVPSVDLLQAQARSKRS*

GH06635.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3815-PA 878 CG3815-PA 1..878 1..878 4615 100 Plus
Chd3-PA 892 CG9594-PA 14..79 26..99 165 40.5 Plus