GH06646.complete Sequence
4924 bp (4924 high quality bases) assembled on 2001-07-04
GenBank Submission: AY060246
> GH06646.complete
GACGGTTGAGCGTATTGAATTTCCAATAGGTTCCAGTACTTTGGCGAGCT
GTCGAAGAATTATTGCTTAAGTTTGTTCATCCTATTTTTTCGCTTTATCT
GGCATCACATTCACAACCCACTTACTTAACTTTACCCGCCGCCCGCCCAT
GATTTATTTATAGGTCGAAAATGGAAATTGGAAACTTGACACCGAGTGTC
AAAGTGTTTTCACTTCATTCCGACGGGACTCGGAGTACTCGCAGCAATTA
TCCCTGGCGAAAGTGCCCATCCATCCATTCATACTAGTTGCAAACATTTT
GTTCGCATCCATAACTCGCTGTTAATTGCTGTAATCCCCTTAGTTCTTAA
TCAGATAGCGAGCTGCTAGTGCACCTAATTACCGGGGAAAATAGAAAATA
GAGTCGGCATAAAAGTATCTCATTGGCACATAATGCAGTTTGCACCGCCA
CCGCCGGCGCTCGACCTTCTTACATGCTCACTTAACCTCTCCCTTAGCCG
GATTCAGATACAGATACAGATTCAAACTGAAAACGAGATTCAGATCCAGA
TCCAGATCCGTCATGGCAACGCCGCAATCCACCCGGACACGCATAGAAAT
GTAAATTCATTATTTATTATTTGTTTGCCTCAATAGAAATCAAATTAGTT
TAAGTGGCGAGCTCTTGGCCCAGAGCAGAGCACAGTCAGACAGTTGGCTT
CGCATTTGAAAAACGCCCACCTACGCGCCACGCCCATCGCCACCCAGCCG
CTCATCAAACCCTCCGCCCTCCTCTATTTTGATATTTTCCACTTGATATT
TCTGAGCTGGAACTCCAGTAGTCCGACTGTCTGGCTGTTTGACTGTTTGA
CTGCCTGACTGGCAGTCTTGGCTGCCTGCCTTCCTTTTTTCCTTGATTTG
ATTTTGTTTAAATATTAAACGAGAGTTTTAGGTCTCATTTATAATTCAGG
GGATCCCCCCTGTCCGACCGAACGCCCCTCCACCACCCATACGCCACGAT
TTTGATTCCGATTGAGGGGGCGGGGTCAAGTTGGTTTTGATTAGCAGACC
GTAAAACAATGGTATCAATAGTACAATGGAATTGCGTGTGCATGTGTGCT
GTTCTTTATTAAATCATTATTTGTTTAGATTGTCACACAAGCGCGCACAC
AAACACGAGATTAAATTTCAGCTTTGGATAAAAGAGCAAGCCCTTCGGCA
AACTGAAAACTGAAAGCTGAAAACGCTGCAAGGACCCATTCCTATGCATT
TCGCCCATATTAAGGCCTTTAAATTGAGATTTCCAGCAACGGCTTAATAA
AGTTGCTTTCAATTACGACAGTTTCAGTCATTTTTATGGCCCACAGCAAA
AACACACAGGGAAACAATGTATCTGCATCTGGCTTGGCAGACTGTAATTG
GGCTTAGACAGTCGACAGTTTCAATTACTGAAAACTTGTACATACGGGAT
TAGCAGGGAAAGCCTTGTTAATTGCTATAAGGCTAATGTAGTGTCGTTTT
CACTCGTGTCGGGCATCAAAGGATATGGAAGGTTTTCCACACATTCACAA
ACTGGCAATCTACACTCTCGGTCGAAATAATAGGTTCACTCAAGTCAAGT
TGAATCTAAAGCTATAAGGATCAAATTCATTTATTTGAATATCAATTGCA
ATATCAATGCACTCATAACTTAATGAAAGAATAATCGTAGATAAATAAAA
ACAACTTCGTGTCAAGTCCTATTATTTCGACCATGGGTGTGCCCAAGCGG
GCAAAGTGCGTGTAAGCGAGCTGCCAATCAAATGAACGAGTCTGTTGCCC
GACTCCTGAATCCTTCGATTCATTGGCATCAATGATAATCCAATGCGAGC
CATCAAAAGCAATTGCATACTTCGGGGCGTTTGCTAACTGCCATTTAAAT
TGCATTTTCGAGTACAAACTACACACGATAGTACGAGTATCACTAGCCCA
CTCGACCCCCGGCTCCGGGTGAAACTCTTAGCCATCAGCCGCCGCCCCAA
TCTTTCCCAATCTTCACTGCCCCCCTTAATTATGTTTACCGCTTTTTTGC
GAGCGCTTTTAGTCAGACATTTTGTGTAGCCGGTGACGGGCTGCCAGGCA
GCATTTGCATACCAATTTCCCCACCAGCCCCACCCACCTGAATGCCTCCT
TTTGCGATTCCACCTGCACTCCGCCAGCAAGCAAAAAGCGGAAAAAGCCC
GGACATAAAAAATGAAGCCTTGGCCGGGGTGATGGGCACTCAATGAAGGC
CAGGCCGCAGCGTTTTAATTGCAGCGCAGAAGCGTAGGCGGTATATGAAA
ATAATTAAAATAATTAAGCAAAACTACGGCATCCAAGCACTCGGCGCTTT
CAGGAGTAGGAGGAAGAGGTGGAGGAGGTGGAGGAGGCGGACGCCCTCTA
CTTGAGTTCTCGTTTTTCACATTTTTCCGCCAAAATATTCAACAATCATC
TCCTTTCGCCGCAGTTTCCGCCAGTTTCTTTTGGCCATTTTATTATGAGT
TTATCTTTTTGTGCGTTCAGCGCCGCCCCGCTCGCATTCCTCGGGCTCTC
ATAATTTGTATTATGTTATTTGGTGTTACAACATAACAGGACATGCTTTC
GCCAATTTCGGTGCAAGAATATTTAAATTTAATCAAATGTCGGTAAAAAT
GTTCACCATGCCTTTTGTGCCCGCTTCGGAAAAGCAAAAAAAAAGAATGT
TTGGGAGGGAAAACCATCAACAATAACAACACGCACACGTAACAGGGCAT
TGCCATTCCATTTGGGGGTGGAAGTGGGTGCAAGTGGGTGTGCGTGTGGG
TGTGTGTGGGTGGGAGTTTTCACCTGGACGTTGACTGGGTAATTTGTTAG
TGGGGCCGGGAGGCGCAGGAAACCCAACTCAACCCCGATCCTAGTCTGAC
ACCGAGTTTTATTTTATTTTATTTTATATAGTTTTTGGCATTTTCATGTG
CCCACTTTTCCTTCGTGTTCCGCCTTTTTTTCCGGGGCCTGCGTGAGTTG
GTACAGTTTTCGCCGCGTGTACACACATACATGCATATACATATATATAT
ATATACGTACATATGTACATATAGAGCGCGAATACCGAATACCGAGCATA
AAAACTTATTTACCTAGGGACACCCGGGAACGGAGCAGGATTCCGGATTC
CGATTCCGGGGCGATTCAGTGGCGTCAGGCGCCCGGGGTGTCAACCAATT
TCGAGTGTTTTCCCCGGGTCCTGGCCCGCAACAAAAACGCGGAGGGAGGG
GCGTGGTGAAGTGTGGGGTAAAAAGAAAATCTCTCAACGCTTCTGGCCAA
ACACACACACCGTGTTGCCAATTGTTGTTGTTGTGTGTTTCCGGCATGGA
CACACACGCACACACACACACACCGCCGCCACCATGACCCACACATACAA
CGTATATTCTCACATTGCCATTTTCATTTCAATTCATTTCATTTATTTAT
GCAATATTTTATGTGCTCATTCATTTTTTGCCCGTTCCGTTGTCGTCGGT
GTGCCCGATTGTTCTATTAATTTGTTGTCGCTCCTCGTTCGGGCTCCTCG
TGGTCTCCGTACCATCCAGCCCATCCAGTCCATCCAAGCCATCCTGGTCG
GTGGCGTTTTGGCCCGGTTATTTGCCATCCGCCTCGGTTCGGTTCCATTG
TCAATTTGTTGGATACACGTCTATTTGTACCTAGTATTGTATGCGCATAA
AATTCGTGCCATAAACCCCATTCGTCTTAATTTGTATGACTGTTTTGTTA
CGGTTACGGTTAGGCTCTGTGTTTTGTGTTCTGTATTTTGTTGATACTTA
TTTATTATTTTTATGCCCGGCTCACTTATCTTTGCGTGTCTTGCCTCCGT
GGCCCCTTGCCAAACGGATATTTTTGGGAAATTGGGGAGTGTAGAGGAGG
GCTGCATACCATAAACTAGCCTCGTGCATTAAAGCCAAATTCGACAGAAC
TGCAAGCAATAAATTCGCATAGCCACACATAAAACAATCATCATCAGCAG
AGGCGGAATTTGATTTGGAATGATAATCTGATTTAGAAGCAGAATCTGAA
TCCGAATCAGAGGCGATGGCCTCAACGTAAACGACAGTTGTAGAAATGTG
AATATGAACAAATGACAATAACAATTACAATTACACACAACGCTGTAAAT
AAAGGTCCAAATTCCATATATTCTCTTGTACAGATATTTAATTGTGTTTG
TTTGTTGGTACATACATACTTACATACATATTTACTACTGATTGATTTGA
TTTTGAGTTACTTTTGAGATACTGTTCGTTGTCACCAATTGAGACGCTTT
GATTTTGTTTTTTGAATATTATATATAACTCTTTGTATTTGTACATGATT
ATGATTATTAATGTTTATATTAATCCACTGCTAACAAAAATCATCATCAA
CTTTGTACAGTAAAACCATGAGCGAGTTTTAAAGTAAACCAAATGAAGAT
TAACCCAAATCTAAAGCTTCGGCTTGTGACGAAGTTGAAAGTAGGATTTC
CAAGATTGGTAGCGGTGCATGAAGAGATGTACATAAACACACTTGTAATA
TACAACTCCATACCTCTAAGTTCACCAATGTTATCTCTCTTAAGCTTCAA
ATTTGATTGTGATCCGAGCGAACGGTTTGTAAATCTCCTTATTATGGCTA
ATAATGTTTTTTGGATATAATTCTTGCCTTGTTTTTTTTTTACCTAATCA
GATCGAGTCTGCCAAGCTCTTGGAAATCGTACAACCCAAATACCCAAATG
CCCATTCCATTTCGAAAAGAATGCCTTTTAAATTTCATTTACCGGTTTGT
TAAGTTTCCTTCAGTTGTCCGATCCCCAAAATGCACCCAACCGCACCCGA
ATTACCCACCACAATCCCCAATCACAACTCCCGCTTTTGAGTTCTGTTTT
CGCTTTAAAAAAAAAAAAAAAAAA
GH06646.complete Blast Records
Blast to MB8.fasta performed on 2010-07-15 16:24:10 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chr3R | 27901430 | chr3R | 17151282..17156191 | 4906..1 | 24050 | 99.5 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:35:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:05:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21327452..21332375 | 4924..1 | 24620 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 31820162 | 3R | 21068283..21073206 | 4924..1 | 24620 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 18:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 1391..1490 | 4400..4303 | 143 | 64.4 | Minus |
| Dnet\R1A | 1757 | Dnet\R1A NEOR1A 1757bp | 1063..1115 | 3599..3546 | 141 | 75.9 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 1585..1666 | 1642..1727 | 132 | 66.7 | Plus |
| opus | 7521 | opus OPUS 7521bp | 6088..6260 | 4372..4198 | 131 | 55.9 | Minus |
| 297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 2455..2609 | 4464..4305 | 120 | 56.2 | Minus |
GH06646.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:06:17 Download gff for
GH06646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chr3R | 17151282..17153118 | 3072..4906 | 97 | == | Minus |
| chr3R | 17153173..17155310 | 882..3019 | 97 | == | Minus |
| chr3R | 17155372..17156191 | 1..820 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 13:42:48 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 13:42:48 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:06:17 Download gff for
GH06646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21327470..21332375 | 1..4906 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:06:17 Download gff for
GH06646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21327470..21332375 | 1..4906 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:06:17 Download gff for
GH06646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21327470..21332375 | 1..4906 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:08:56 Download gff for
GH06646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17153192..17158097 | 1..4906 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:08:56 Download gff for
GH06646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17153192..17158097 | 1..4906 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:08:56 Download gff for
GH06646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17153192..17158097 | 1..4906 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:34:33 Download gff for
GH06646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21068301..21073206 | 1..4906 | 100 | | Minus |
GH06646.pep Sequence
Translation from 3383 to 3793
> GH06646.pep
MTHTYNVYSHIAIFISIHFIYLCNILCAHSFFARSVVVGVPDCSINLLSL
LVRAPRGLRTIQPIQSIQAILVGGVLARLFAIRLGSVPLSICWIHVYLYL
VLYAHKIRAINPIRLNLYDCFVTVTVRLCVLCSVFC*
Sequence GH06646.pep has no blast hits.
GH06646.hyp Sequence
Translation from 3383 to 3793
> GH06646.hyp
MTHTYNVYSHIAIFISIHFIYLCNILCAHSFFARSVVVGVPDCSINLLSL
LVRAPRGLRTIQPIQSIQAILVGGVLARLFAIRLGSVPLSICWIHVYLYL
VLYAHKIRAINPIRLNLYDCFVTVTVRLCVLCSVFC*
Sequence GH06646.hyp has no blast hits.
