Clone GH06673 Report

Search the DGRC for GH06673

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:66
Well:73
Vector:pOT2
Associated Gene/TranscriptCG3700-RA
Protein status:GH06673.pep: gold
Preliminary Size:1300
Sequenced Size:1175

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3700 2001-01-01 Release 2 assignment
CG3700 2001-11-29 Blastp of sequenced clone
CG3700 2003-01-01 Sim4 clustering to Release 3
CG3700 2008-04-29 Release 5.5 accounting
MED23 2008-08-15 Release 5.9 accounting
CG3700 2008-08-15 Release 5.9 accounting
CG3700 2008-12-18 5.12 accounting
MED23 2008-12-18 5.12 accounting

Clone Sequence Records

GH06673.complete Sequence

1175 bp (1175 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069055

> GH06673.complete
CGATGTATGCGCTTCCGGGAATCCAGATTCTGTTGCTGATTGCTTCAGTC
AGCGTGGTGACCGAGTACTGCGACAATGGAACGGGCGAGTGCAAGGAGCT
GACGCCCTCCGACTGTCCAGTGATATTCTACAACCAGCACCTGATCGGAG
CCGAAGTCAAGTACTGCGACGAGTTCAACGACATTGTCTGCTGTCCCATA
CCGCTGGATCACCAGAATCTGAAGCCAGCCGAACAGACGAGGCCTTTTGA
GAAGCAGTGCAAGCAATACAACGAGGTCAGATCCGCCTGCCAGTCCACGC
CCTTCATCGTGGGCGGCACAAAGGCATCCGGTAAAGAGTTTCCCTTCATG
GCCCTAATCGGCACTCATCGGCCCAACAAGTCCAAGTCGGACATCAATTG
GGATTGTGGTGGATCCGTGGTGCATCCCAAATTCGTACTGACTGCGGCGC
ATTGCCTGGAGACGGATGAATCGAAGGCCGAGCGACTGGACCCAAACTTT
GATTCGCCCAAATTTGTAGTTCGCCTGGGGGAGCTGGACTACAACAGCAC
CACCGATGATGCTCTGGTTCAGGACTTTCGGGTGGTCAACTATGTGGTGC
ACCCTGGATATGATACTGAAGACGAAGAGCAGGGCTTTAAAAACGATATT
GCCCTGGTGGAACTGGATCGGAAGGCTGAGTTCAACGACCATGTGGCAGC
GGTATGCCTTCCGCCAGACAGCGGCAACGATGTTCAGCAGGTCACAGCCG
CCGGCTGGGGATTTACCGCGGACGGTGTGAAGTCCTCGCACCTGCTGAAG
GTCAACCTCCAGCGATTCAGTGACGAGGTGTGCCAGAAGCGCCTGCGTTT
CAGCATCGATACACGCACCCAGTTCTGTGCCGGCTCAATGTCCAGCCAAG
CGGACACCTGCAACGGTGACTCCGGCGGACCTATATTCGTCCAGCATCCG
CTCTATCCGTGCCTGAAGCAGGTCATAGGGATTGTCTCATATGGATTAGT
TTGTGGCTCCCAAGGACTCCCGAGTGTCTATACCAAAGTCCACCTCTACA
CCGACTGGATCGAGAGCATCGTGTGGGGCAATTGACAGTTAGGAGTCGTA
ATATAACAAAAAAAGGATAGTTTAAAAAATAAAAATATTTCAAATAAATC
AAATTAAAAAAAAAAAAAAAAAAAA

GH06673.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3700-RA 1163 CG3700-RA 8..1163 1..1156 5780 100 Plus
MED23-RB 5811 MED23-RB 4664..5811 1..1148 5740 100 Plus
CG3700-RB 5811 CG3700-RB 4664..5811 1..1148 5740 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18781574..18782259 470..1155 3415 99.9 Plus
chr2R 21145070 chr2R 18780979..18781233 1..255 1245 99.2 Plus
chr2R 21145070 chr2R 18781297..18781510 256..469 1025 98.6 Plus
chr2R 21145070 chr2R 12460840..12461055 864..1079 330 76.9 Plus
chr2R 21145070 chr2R 12460499..12460574 526..601 200 84.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:35:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22895060..22895746 470..1156 3435 100 Plus
2R 25286936 2R 22894463..22894717 1..255 1275 100 Plus
2R 25286936 2R 22894783..22894996 256..469 1070 100 Plus
2R 25286936 2R 16573599..16573814 864..1079 315 76.4 Plus
2R 25286936 2R 16573258..16573333 526..601 185 82.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22896259..22896945 470..1156 3435 100 Plus
2R 25260384 2R 22895662..22895916 1..255 1275 100 Plus
2R 25260384 2R 22895982..22896195 256..469 1070 100 Plus
2R 25260384 2R 16574798..16575013 864..1079 315 76.3 Plus
2R 25260384 2R 16574457..16574532 526..601 185 82.8 Plus
Blast to na_te.dros performed on 2019-03-15 21:48:55 has no hits.

GH06673.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:50:06 Download gff for GH06673.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18780979..18781233 1..255 99 -> Plus
chr2R 18781297..18781510 256..469 98 -> Plus
chr2R 18781574..18782220 470..1116 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:21:15 Download gff for GH06673.complete
Subject Subject Range Query Range Percent Splice Strand
CG3700-RB 1..1083 3..1085 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:21:40 Download gff for GH06673.complete
Subject Subject Range Query Range Percent Splice Strand
CG3700-RB 1..1083 3..1085 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:58:51 Download gff for GH06673.complete
Subject Subject Range Query Range Percent Splice Strand
CG3700-RA 1..1083 3..1085 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:48:01 Download gff for GH06673.complete
Subject Subject Range Query Range Percent Splice Strand
CG3700-RB 1..1083 3..1085 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:03:24 Download gff for GH06673.complete
Subject Subject Range Query Range Percent Splice Strand
CG3700-RA 1..1083 3..1085 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:56:04 Download gff for GH06673.complete
Subject Subject Range Query Range Percent Splice Strand
CG3700-RA 8..1162 1..1155 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:21:40 Download gff for GH06673.complete
Subject Subject Range Query Range Percent Splice Strand
CG3700-RA 8..1162 1..1155 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:58:51 Download gff for GH06673.complete
Subject Subject Range Query Range Percent Splice Strand
CG3700-RA 29..1183 1..1155 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:48:01 Download gff for GH06673.complete
Subject Subject Range Query Range Percent Splice Strand
CG3700-RA 8..1162 1..1155 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:24 Download gff for GH06673.complete
Subject Subject Range Query Range Percent Splice Strand
CG3700-RA 29..1183 1..1155 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:06 Download gff for GH06673.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22894783..22894996 256..469 100 -> Plus
2R 22894463..22894717 1..255 100 -> Plus
2R 22895060..22895745 470..1155 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:06 Download gff for GH06673.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22894783..22894996 256..469 100 -> Plus
2R 22894463..22894717 1..255 100 -> Plus
2R 22895060..22895745 470..1155 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:06 Download gff for GH06673.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22894783..22894996 256..469 100 -> Plus
2R 22894463..22894717 1..255 100 -> Plus
2R 22895060..22895745 470..1155 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:58:51 Download gff for GH06673.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18781986..18782240 1..255 100 -> Plus
arm_2R 18782306..18782519 256..469 100 -> Plus
arm_2R 18782583..18783268 470..1155 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:24:29 Download gff for GH06673.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22895680..22895934 1..255 100 -> Plus
2R 22896000..22896213 256..469 100 -> Plus
2R 22896277..22896962 470..1155 100   Plus

GH06673.pep Sequence

Translation from 2 to 1084

> GH06673.pep
MYALPGIQILLLIASVSVVTEYCDNGTGECKELTPSDCPVIFYNQHLIGA
EVKYCDEFNDIVCCPIPLDHQNLKPAEQTRPFEKQCKQYNEVRSACQSTP
FIVGGTKASGKEFPFMALIGTHRPNKSKSDINWDCGGSVVHPKFVLTAAH
CLETDESKAERLDPNFDSPKFVVRLGELDYNSTTDDALVQDFRVVNYVVH
PGYDTEDEEQGFKNDIALVELDRKAEFNDHVAAVCLPPDSGNDVQQVTAA
GWGFTADGVKSSHLLKVNLQRFSDEVCQKRLRFSIDTRTQFCAGSMSSQA
DTCNGDSGGPIFVQHPLYPCLKQVIGIVSYGLVCGSQGLPSVYTKVHLYT
DWIESIVWGN*

GH06673.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13554-PA 363 GF13554-PA 1..362 1..359 1520 78 Plus
Dana\GF11395-PA 359 GF11395-PA 1..358 1..359 1162 58.6 Plus
Dana\GF16274-PA 314 GF16274-PA 59..307 96..353 532 44.2 Plus
Dana\GF16273-PA 323 GF16273-PA 60..317 90..354 462 38.4 Plus
Dana\GF16272-PA 313 GF16272-PA 55..307 91..355 437 38.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22813-PA 359 GG22813-PA 1..359 1..360 1816 94.5 Plus
Dere\GG20614-PA 362 GG20614-PA 8..361 9..359 1256 64.6 Plus
Dere\GG11639-PA 334 GG11639-PA 79..327 96..353 522 44.2 Plus
Dere\GG11636-PA 320 GG11636-PA 60..312 89..354 473 39.7 Plus
Dere\GG17080-PA 435 GG17080-PA 98..432 24..358 432 33.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21276-PA 360 GH21276-PA 1..359 1..359 1332 66.5 Plus
Dgri\GH21187-PA 368 GH21187-PA 23..367 18..359 1166 64.4 Plus
Dgri\GH18680-PA 287 GH18680-PA 16..286 69..360 487 39.3 Plus
Dgri\GH18679-PA 328 GH18679-PA 73..321 95..354 466 41.5 Plus
Dgri\GH18677-PA 317 GH18677-PA 58..310 88..354 459 39.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3700-PA 360 CG3700-PA 1..360 1..360 1946 100 Plus
CG4927-PC 362 CG4927-PC 7..361 9..359 1235 63.6 Plus
CG11843-PB 316 CG11843-PB 61..309 96..353 519 43.1 Plus
CG11843-PA 316 CG11843-PA 61..309 96..353 519 43.1 Plus
CG11841-PA 319 CG11841-PA 59..311 89..354 477 39.7 Plus
snk-PB 435 CG7996-PB 98..432 24..358 439 33.6 Plus
snk-PA 435 CG7996-PA 98..432 24..358 439 33.6 Plus
CG11842-PA 319 CG11842-PA 60..313 89..354 418 35 Plus
spirit-PD 393 CG2056-PD 61..366 28..358 364 33.1 Plus
spirit-PC 393 CG2056-PC 61..366 28..358 364 33.1 Plus
spirit-PA 393 CG2056-PA 61..366 28..358 364 33.1 Plus
spirit-PB 393 CG2056-PB 61..366 28..358 364 33.1 Plus
CG1299-PB 442 CG1299-PB 138..434 55..353 355 30.6 Plus
CG1299-PA 511 CG1299-PA 207..503 55..353 355 30.6 Plus
MP1-PA 390 CG1102-PA 98..388 74..357 338 32 Plus
MP1-PC 399 CG1102-PC 107..397 74..357 338 32 Plus
MP1-PE 400 CG1102-PE 108..398 74..357 338 32 Plus
CG7432-PB 721 CG7432-PB 471..715 98..353 338 34.6 Plus
CG9372-PA 408 CG9372-PA 172..402 100..353 331 34.6 Plus
CG8172-PD 371 CG8172-PD 155..366 135..357 309 32.6 Plus
CG8172-PE 545 CG8172-PE 329..540 135..357 309 32.6 Plus
CG8172-PF 561 CG8172-PF 345..556 135..357 309 32.6 Plus
SPE-PA 400 CG16705-PA 91..395 61..354 308 32.6 Plus
CG3355-PA 314 CG3355-PA 33..302 57..353 305 29.1 Plus
CG6865-PB 285 CG6865-PB 33..283 100..359 302 31 Plus
CG32808-PA 284 CG32808-PA 30..259 102..357 294 36.2 Plus
CG11668-PA 398 CG11668-PA 143..397 97..358 292 32.1 Plus
lint-PB 1674 CG8213-PB 1430..1670 102..356 290 30.7 Plus
lint-PC 1693 CG8213-PC 1449..1689 102..356 290 30.7 Plus
ea-PA 392 CG4920-PA 128..390 102..357 289 33.7 Plus
CG14642-PC 392 CG14642-PC 146..391 104..358 288 31.3 Plus
CG14642-PB 392 CG14642-PB 146..391 104..358 288 31.3 Plus
CG8586-PC 444 CG8586-PC 198..436 112..359 286 33.2 Plus
CG8586-PB 444 CG8586-PB 198..436 112..359 286 33.2 Plus
CG8586-PA 444 CG8586-PA 198..436 112..359 286 33.2 Plus
CG43110-PA 483 CG43110-PA 24..258 92..357 286 32.4 Plus
CG43110-PB 483 CG43110-PB 24..258 92..357 286 32.4 Plus
CG30091-PA 526 CG30091-PA 32..277 97..357 286 33.2 Plus
CG9733-PB 417 CG9733-PB 161..415 102..357 284 32.5 Plus
CG9733-PA 418 CG9733-PA 162..416 102..357 284 32.5 Plus
CG11670-PD 404 CG11670-PD 106..396 65..360 282 28.3 Plus
Hayan-PA 378 CG6361-PA 38..373 13..358 280 27.4 Plus
CG9737-PA 424 CG9737-PA 145..410 97..357 276 33.6 Plus
ea-PB 261 CG4920-PB 7..259 112..357 275 33.5 Plus
grass-PA 335 CG5896-PA 36..333 55..360 275 28.1 Plus
grass-PB 377 CG5896-PB 78..375 55..360 275 28.1 Plus
psh-PA 394 CG6367-PA 119..389 80..358 274 31.4 Plus
Sp7-PF 391 CG3066-PF 137..385 102..353 273 30.9 Plus
Sp7-PE 391 CG3066-PE 137..385 102..353 273 30.9 Plus
CG8172-PG 192 CG8172-PG 3..187 173..357 270 33.3 Plus
CG11836-PI 281 CG11836-PI 45..272 102..355 270 30.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19100-PA 358 GI19100-PA 5..357 7..359 1284 64.9 Plus
Dmoj\GI20473-PA 368 GI20473-PA 16..367 12..359 1222 63.8 Plus
Dmoj\GI24190-PA 315 GI24190-PA 53..312 88..357 520 40.1 Plus
Dmoj\GI24189-PA 327 GI24189-PA 70..320 91..354 495 43 Plus
Dmoj\GI24188-PA 316 GI24188-PA 57..309 88..354 461 39 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10135-PA 358 GL10135-PA 4..358 3..360 1471 75.8 Plus
Dper\GL17283-PA 349 GL17283-PA 4..348 17..359 1186 64.9 Plus
Dper\GL24254-PA 316 GL24254-PA 55..314 88..357 523 42.1 Plus
Dper\GL24251-PA 317 GL24251-PA 58..310 89..354 449 37.9 Plus
Dper\GL23147-PA 428 GL23147-PA 95..425 24..358 439 33.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17623-PA 358 GA17623-PA 4..358 3..360 1464 75.3 Plus
Dpse\GA18531-PA 366 GA18531-PA 1..365 1..359 1201 62.8 Plus
Dpse\GA11230-PA 315 GA11230-PA 53..312 88..357 523 42.1 Plus
Dpse\GA11228-PA 317 GA11228-PA 58..310 89..354 455 38.2 Plus
Dpse\GA11229-PA 319 GA11229-PA 61..313 91..355 439 39 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15970-PA 360 GM15970-PA 1..360 1..360 1887 97.2 Plus
Dsec\GM21709-PA 362 GM21709-PA 5..361 7..359 1251 64.1 Plus
Dsec\GM12762-PA 316 GM12762-PA 61..309 96..353 512 45.7 Plus
Dsec\GM12758-PA 319 GM12758-PA 59..311 89..354 477 39.7 Plus
Dsec\GM25963-PA 435 GM25963-PA 98..432 24..358 442 33.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11722-PA 360 GD11722-PA 1..360 1..360 1901 98.1 Plus
Dsim\GD11206-PA 362 GD11206-PA 7..361 9..359 1202 62.7 Plus
Dsim\GD21407-PA 319 GD21407-PA 59..311 89..354 477 39.7 Plus
Dsim\GD21409-PA 235 GD21409-PA 1..228 116..353 460 43.5 Plus
Dsim\GD21042-PA 282 GD21042-PA 21..272 91..354 399 34.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22231-PA 372 GJ22231-PA 23..371 10..359 1291 65.6 Plus
Dvir\GJ22323-PA 365 GJ22323-PA 8..364 7..359 1269 66.9 Plus
Dvir\GJ10537-PA 314 GJ10537-PA 47..314 82..360 532 40.6 Plus
Dvir\GJ10536-PA 324 GJ10536-PA 66..320 90..357 478 40.9 Plus
Dvir\GJ10535-PA 317 GJ10535-PA 57..310 88..354 473 40.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20792-PA 360 GK20792-PA 12..359 11..359 1401 72 Plus
Dwil\GK16800-PA 330 GK16800-PA 1..329 33..359 1038 58.4 Plus
Dwil\GK19113-PA 307 GK19113-PA 51..307 88..360 548 42.3 Plus
Dwil\GK22569-PA 313 GK22569-PA 49..297 96..354 475 39.8 Plus
Dwil\GK22568-PA 320 GK22568-PA 53..313 82..354 474 39.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14247-PA 358 GE14247-PA 1..358 1..360 1836 95 Plus
Dyak\GE11804-PA 362 GE11804-PA 1..361 1..359 1252 63.5 Plus
Dyak\GE23830-PA 316 GE23830-PA 55..309 90..353 509 43.2 Plus
Dyak\GE23826-PA 323 GE23826-PA 60..312 89..354 469 39.7 Plus
Dyak\GE23829-PA 297 GE23829-PA 38..290 89..353 428 35.8 Plus

GH06673.hyp Sequence

Translation from 2 to 1084

> GH06673.hyp
MYALPGIQILLLIASVSVVTEYCDNGTGECKELTPSDCPVIFYNQHLIGA
EVKYCDEFNDIVCCPIPLDHQNLKPAEQTRPFEKQCKQYNEVRSACQSTP
FIVGGTKASGKEFPFMALIGTHRPNKSKSDINWDCGGSVVHPKFVLTAAH
CLETDESKAERLDPNFDSPKFVVRLGELDYNSTTDDALVQDFRVVNYVVH
PGYDTEDEEQGFKNDIALVELDRKAEFNDHVAAVCLPPDSGNDVQQVTAA
GWGFTADGVKSSHLLKVNLQRFSDEVCQKRLRFSIDTRTQFCAGSMSSQA
DTCNGDSGGPIFVQHPLYPCLKQVIGIVSYGLVCGSQGLPSVYTKVHLYT
DWIESIVWGN*

GH06673.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3700-PA 360 CG3700-PA 1..360 1..360 1946 100 Plus
CG4927-PC 362 CG4927-PC 7..361 9..359 1235 63.6 Plus
CG11843-PB 316 CG11843-PB 61..309 96..353 519 43.1 Plus
CG11843-PA 316 CG11843-PA 61..309 96..353 519 43.1 Plus
CG11841-PA 319 CG11841-PA 59..311 89..354 477 39.7 Plus