Clone GH06695 Report

Search the DGRC for GH06695

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:66
Well:95
Vector:pOT2
Associated Gene/TranscriptNs3-RA
Protein status:GH06695.pep: gold
Preliminary Size:1903
Sequenced Size:2027

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14788 2001-01-01 Release 2 assignment
CG14788 2001-07-04 Blastp of sequenced clone
CG14788 2003-01-01 Sim4 clustering to Release 3
l(1)G0431 2008-04-29 Release 5.5 accounting
l(1)G0431 2008-08-15 Release 5.9 accounting
l(1)G0431 2008-12-18 5.12 accounting

Clone Sequence Records

GH06695.complete Sequence

2027 bp (2027 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047556

> GH06695.complete
GCAAACATTGCACGTGTTTTTGACAATCAAAATAATTATTTCTTCTGTGG
ATTTGCGAATATAGTGACTGCGCCATGGGCAAAAAGAACAAGGGCGGCGC
CCCCAACCTGGGCCGCCAGTTGATCAAGGATCGTTTCGGACACACTCAGC
GCCGCAAGGTGGACAACGACACGATGCTGCACACCACCGAGCTGCAGGAT
GGCTACGACTGGGGCCGCCTCAACCTGTCCTCTGTCACTGAGGAGTCGTC
GTTCCAGGCCTTCCTGCGCACGGCTGAGCTGGCCGGCACTGAGTTCCAGG
CCGAGAAGCTGAACATCACGTTCGTGAACCCCAAGCAGCGCGTTGGACTG
CTGAGCAAGACGCAGGAGCAGCGCATGCACCAGAAGCACGACGAGCACCG
TGACCAGCTCAAGATCCCGCGGCGGCCCAAGTGGACCAAGGAGACGAGCG
CCGAGGAGCTAGTGCGAGCCGAGAACGAGGCATTTCTCGACTGGCGCCGC
GACCTGGCGCTGCTGCAGGAGGACGAGGAGATCTTGATGACTCCGTATGA
GAAGAACCTGGAGTTCTGGCGGCAGCTGTGGCGCGTAGTGGAGCGATCTG
ACGTCGTTGTGCAGATCGTAGACGCCCGTAATCCGCTGCTGTTCCGCAGC
GCCGACCTTGAGCGCTACGTAAAGGAGGTGGAACCTAGCAAGATGAACAT
GATCCTGGTAAACAAGTCGGACCTGCTCACTGAGGAACAGCGTCGCCACT
GGGCGGAGTACTTTGACAGCGAGGGTATTCGCACGGCCTTCTACTCGGCC
ACGCTGGTAGAGGAGGAGTTGAAGCGGGAGGCGGAGGAGTGCCTGGATTC
CTTTCCCGAGGTGCAACAGCTGCGCAGAGCAGTTGAGGAGATAAAACAGT
CGTTGGATAGCGTGGAGGACGCTTTGAACGTTATCGAGCAGAAATATAAG
ACGATTCCCGAGACTCAAAACGATGAGCTGCCACGATTGCCCGGGGACAA
GAACAGTCCCCGACTGCTGTCCCGCCTGGAGCTCATTGAGTTCCTGCGAA
ACATCTACACCGGTCCCCGGCACACAGAGCAGCACGTGACCGTCGGAATG
GTCGGCTACCCAAACGTTGGCAAAAGTAGCACCATCAACTCGCTGATGAC
AGTGAAGAAGGTGTCCGTTTCGGCCACGCCGGGCAAAACTAAACGCTTCC
AGACGCTTTTCCTGGACAAGGACATACTGCTCTGCGACTGTCCCGGTCTG
GTGATGCCGAGTTTTGTGTTAACCAAGGCGGACATGTTGCTCAACGGCAT
CCTGCCCATTGACCAAATGCGCGATCACGTTCCCGCCGTCAACTTGCTGT
GCGAGCGCATTCCGCGCCACGTCCTTGAAGACAAATACGGTATTGTGATA
GCCAAGCCGCTGGAAGGCGAGGACATGGAAAGGCCACCGCATTCGGAGGA
GCTGCTGCTGGCTTATGGATACAATCGCGGTTTTATGACCTCCAACGGGC
AGCCGGATCAGGCGCGTTCCGCCAGGTATGTGCTTAAAGACTACGTCAAT
GGCAGACTGCTCTACGCCATGAGCCCGCCCTCTGTACCGCAGACCGAGTA
TCACACCTTTCCCGAACGCCAGCGCAGGGTCATCGAGGAATCACAGCTGC
CCGGCCAACAGCAGCGAGCCATGCGGATCAACAAAAGCACGTCCAAGGAG
CTAGACAACCAATTCTTCTCCGACAAGCCTACGCACGCCCACGTCAAAGG
ACGCACTAACTTCCCTAACGTGCGCCTGGCCAACGACGGGTCCCTAGTAG
CCGGCAATGATCCGGCGGCCAAGCCCTGGCGTCATGTGAAGAAGGAGAGG
CGCGAGAAGCTGCGCAAAAAGTTCTCGCACCTGGACGAGCACTGATTGTA
GCCCATTAGTTATTTATTCCGAAGGGTGTGTCTAAGAGGCACTTGTACAT
TTTAAGCATTAAACCTACGTATATACATATATATTAAAGTCCCCCCGACT
TCGAGAGTTAAAAAAAAAAAAAAAAAA

GH06695.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
ns3-RA 2225 ns3-RA 81..2089 1..2009 10045 100 Plus
ns3.a 1976 ns3.a 24..1548 1..1525 7625 100 Plus
ns3.a 1976 ns3.a 1546..1965 1590..2009 2100 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1356585..1357879 1470..176 6445 99.8 Minus
chrX 22417052 chrX 1355919..1356252 2009..1676 1655 99.7 Minus
chrX 22417052 chrX 1356312..1356517 1676..1471 985 98.5 Minus
chrX 22417052 chrX 1357953..1358128 176..1 880 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:35:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1462646..1463940 1470..176 6475 100 Minus
X 23542271 X 1461980..1462313 2009..1676 1670 100 Minus
X 23542271 X 1462373..1462578 1676..1471 1030 100 Minus
X 23542271 X 1464014..1464189 176..1 880 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1470744..1472038 1470..176 6475 100 Minus
X 23527363 X 1470078..1470411 2009..1676 1670 100 Minus
X 23527363 X 1470471..1470676 1676..1471 1030 100 Minus
X 23527363 X 1472112..1472287 176..1 880 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:55:24 has no hits.

GH06695.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:56:06 Download gff for GH06695.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1355919..1356251 1677..2009 99 <- Minus
chrX 1356312..1356517 1471..1676 98 <- Minus
chrX 1356585..1357878 177..1470 99 <- Minus
chrX 1357953..1358128 1..176 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:21:20 Download gff for GH06695.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0431-RA 1..1821 75..1895 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:29:11 Download gff for GH06695.complete
Subject Subject Range Query Range Percent Splice Strand
ns3-RA 1..1821 75..1895 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:49:20 Download gff for GH06695.complete
Subject Subject Range Query Range Percent Splice Strand
Ns3-RA 1..1821 75..1895 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:02:35 Download gff for GH06695.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0431-RA 1..1821 75..1895 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:47:40 Download gff for GH06695.complete
Subject Subject Range Query Range Percent Splice Strand
Ns3-RA 1..1821 75..1895 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:29:31 Download gff for GH06695.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0431-RA 24..2032 1..2009 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:29:11 Download gff for GH06695.complete
Subject Subject Range Query Range Percent Splice Strand
ns3-RA 24..2032 1..2009 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:49:20 Download gff for GH06695.complete
Subject Subject Range Query Range Percent Splice Strand
Ns3-RA 32..2040 1..2009 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:02:35 Download gff for GH06695.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0431-RA 24..2032 1..2009 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:47:40 Download gff for GH06695.complete
Subject Subject Range Query Range Percent Splice Strand
Ns3-RA 32..2040 1..2009 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:56:06 Download gff for GH06695.complete
Subject Subject Range Query Range Percent Splice Strand
X 1461980..1462312 1677..2009 100 <- Minus
X 1462373..1462578 1471..1676 100 <- Minus
X 1462646..1463939 177..1470 100 <- Minus
X 1464014..1464189 1..176 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:56:06 Download gff for GH06695.complete
Subject Subject Range Query Range Percent Splice Strand
X 1461980..1462312 1677..2009 100 <- Minus
X 1462373..1462578 1471..1676 100 <- Minus
X 1462646..1463939 177..1470 100 <- Minus
X 1464014..1464189 1..176 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:56:06 Download gff for GH06695.complete
Subject Subject Range Query Range Percent Splice Strand
X 1461980..1462312 1677..2009 100 <- Minus
X 1462373..1462578 1471..1676 100 <- Minus
X 1462646..1463939 177..1470 100 <- Minus
X 1464014..1464189 1..176 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:49:20 Download gff for GH06695.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1356013..1356345 1677..2009 100 <- Minus
arm_X 1356406..1356611 1471..1676 100 <- Minus
arm_X 1356679..1357972 177..1470 100 <- Minus
arm_X 1358047..1358222 1..176 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:40:35 Download gff for GH06695.complete
Subject Subject Range Query Range Percent Splice Strand
X 1470471..1470676 1471..1676 100 <- Minus
X 1470078..1470410 1677..2009 100 <- Minus
X 1470744..1472037 177..1470 100 <- Minus
X 1472112..1472287 1..176 100   Minus

GH06695.pep Sequence

Translation from 74 to 1894

> GH06695.pep
MGKKNKGGAPNLGRQLIKDRFGHTQRRKVDNDTMLHTTELQDGYDWGRLN
LSSVTEESSFQAFLRTAELAGTEFQAEKLNITFVNPKQRVGLLSKTQEQR
MHQKHDEHRDQLKIPRRPKWTKETSAEELVRAENEAFLDWRRDLALLQED
EEILMTPYEKNLEFWRQLWRVVERSDVVVQIVDARNPLLFRSADLERYVK
EVEPSKMNMILVNKSDLLTEEQRRHWAEYFDSEGIRTAFYSATLVEEELK
REAEECLDSFPEVQQLRRAVEEIKQSLDSVEDALNVIEQKYKTIPETQND
ELPRLPGDKNSPRLLSRLELIEFLRNIYTGPRHTEQHVTVGMVGYPNVGK
SSTINSLMTVKKVSVSATPGKTKRFQTLFLDKDILLCDCPGLVMPSFVLT
KADMLLNGILPIDQMRDHVPAVNLLCERIPRHVLEDKYGIVIAKPLEGED
MERPPHSEELLLAYGYNRGFMTSNGQPDQARSARYVLKDYVNGRLLYAMS
PPSVPQTEYHTFPERQRRVIEESQLPGQQQRAMRINKSTSKELDNQFFSD
KPTHAHVKGRTNFPNVRLANDGSLVAGNDPAAKPWRHVKKERREKLRKKF
SHLDEH*

GH06695.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21278-PA 605 GF21278-PA 1..605 1..606 2831 87.8 Plus
Dana\GF15352-PA 575 GF15352-PA 112..480 114..494 376 32 Plus
Dana\GF17911-PA 581 GF17911-PA 138..425 163..508 302 27.5 Plus
Dana\GF13248-PA 676 GF13248-PA 299..476 320..508 218 29.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12698-PA 607 GG12698-PA 1..607 1..606 3082 96 Plus
Dere\GG21249-PA 575 GG21249-PA 104..498 106..510 380 31.7 Plus
Dere\GG16794-PA 581 GG16794-PA 139..424 163..506 300 27.6 Plus
Dere\GG21043-PA 674 GG21043-PA 299..476 320..508 224 31.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11875-PA 611 GH11875-PA 1..611 1..606 2760 85.3 Plus
Dgri\GH10880-PA 570 GH10880-PA 116..489 114..502 379 31.3 Plus
Dgri\GH18066-PA 581 GH18066-PA 139..504 163..560 292 25.4 Plus
Dgri\GH20960-PA 682 GH20960-PA 299..467 320..501 226 31.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
Ns3-PB 606 CG14788-PB 1..606 1..606 3156 100 Plus
Ns3-PA 606 CG14788-PA 1..606 1..606 3156 100 Plus
Ns4-PA 575 CG9320-PA 113..498 115..510 392 32.4 Plus
Ns1-PA 581 CG3983-PA 139..424 163..506 291 26.7 Plus
Ns2-PA 674 CG6501-PA 299..476 320..508 212 31.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15663-PA 613 GI15663-PA 1..613 1..606 2757 85.5 Plus
Dmoj\GI18253-PA 574 GI18253-PA 113..492 114..502 415 31.8 Plus
Dmoj\GI23744-PA 583 GI23744-PA 141..428 163..504 268 26.1 Plus
Dmoj\GI21297-PA 678 GI21297-PA 299..483 320..515 242 31.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14378-PA 602 GL14378-PA 1..602 1..606 2828 87 Plus
Dper\GL18517-PA 577 GL18517-PA 112..491 114..503 382 31.9 Plus
Dper\GL21923-PA 583 GL21923-PA 139..427 163..507 304 27.4 Plus
Dper\GL10621-PA 676 GL10621-PA 299..484 320..523 234 31.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13246-PA 602 GA13246-PA 1..602 1..606 2832 87.1 Plus
Dpse\GA21698-PA 577 GA21698-PA 112..491 114..503 382 31.9 Plus
Dpse\GA26447-PA 583 GA26447-PA 139..427 163..507 303 27.4 Plus
Dpse\GA19643-PA 676 GA19643-PA 299..484 320..523 234 31.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18974-PA 607 GM18974-PA 1..607 1..606 3208 98.8 Plus
Dsec\GM23366-PA 575 GM23366-PA 104..498 106..510 389 31.9 Plus
Dsec\GM15388-PA 581 GM15388-PA 139..424 163..506 303 27.9 Plus
Dsec\GM19971-PA 674 GM19971-PA 299..479 320..511 225 31.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24278-PA 575 GD24278-PA 104..498 106..510 385 31.9 Plus
Dsim\sta-PA 133 GD16420-PA 68..133 543..606 332 93.9 Plus
Dsim\GD25465-PA 674 GD25465-PA 299..476 320..508 225 31.2 Plus
Dsim\GD20254-PA 328 GD20254-PA 5..169 328..504 202 31.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19196-PA 611 GJ19196-PA 1..611 1..606 2737 85.5 Plus
Dvir\GJ17511-PA 576 GJ17511-PA 114..496 114..503 371 30.6 Plus
Dvir\GJ20899-PA 682 GJ20899-PA 299..467 320..501 229 31.7 Plus
Dvir\GJ10591-PA 581 GJ10591-PA 251..426 320..504 212 30.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10107-PA 610 GK10107-PA 1..610 1..606 2813 85.8 Plus
Dwil\GK14912-PA 576 GK14912-PA 111..492 112..503 371 31.1 Plus
Dwil\GK13906-PA 579 GK13906-PA 132..429 156..506 302 27.3 Plus
Dwil\GK21401-PA 681 GK21401-PA 299..476 320..510 228 30.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16528-PA 572 GE16528-PA 1..572 1..606 2817 88.5 Plus
Dyak\GE12344-PA 575 GE12344-PA 104..491 106..503 379 31.7 Plus
Dyak\GE26110-PA 581 GE26110-PA 139..424 163..506 304 27.9 Plus
Dyak\GE13986-PA 674 GE13986-PA 299..476 320..508 224 31.2 Plus

GH06695.hyp Sequence

Translation from 74 to 1894

> GH06695.hyp
MGKKNKGGAPNLGRQLIKDRFGHTQRRKVDNDTMLHTTELQDGYDWGRLN
LSSVTEESSFQAFLRTAELAGTEFQAEKLNITFVNPKQRVGLLSKTQEQR
MHQKHDEHRDQLKIPRRPKWTKETSAEELVRAENEAFLDWRRDLALLQED
EEILMTPYEKNLEFWRQLWRVVERSDVVVQIVDARNPLLFRSADLERYVK
EVEPSKMNMILVNKSDLLTEEQRRHWAEYFDSEGIRTAFYSATLVEEELK
REAEECLDSFPEVQQLRRAVEEIKQSLDSVEDALNVIEQKYKTIPETQND
ELPRLPGDKNSPRLLSRLELIEFLRNIYTGPRHTEQHVTVGMVGYPNVGK
SSTINSLMTVKKVSVSATPGKTKRFQTLFLDKDILLCDCPGLVMPSFVLT
KADMLLNGILPIDQMRDHVPAVNLLCERIPRHVLEDKYGIVIAKPLEGED
MERPPHSEELLLAYGYNRGFMTSNGQPDQARSARYVLKDYVNGRLLYAMS
PPSVPQTEYHTFPERQRRVIEESQLPGQQQRAMRINKSTSKELDNQFFSD
KPTHAHVKGRTNFPNVRLANDGSLVAGNDPAAKPWRHVKKERREKLRKKF
SHLDEH*

GH06695.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
Ns3-PB 606 CG14788-PB 1..606 1..606 3156 100 Plus
Ns3-PA 606 CG14788-PA 1..606 1..606 3156 100 Plus
Ns4-PA 575 CG9320-PA 113..498 115..510 392 32.4 Plus
Ns1-PA 581 CG3983-PA 139..424 163..506 291 26.7 Plus
Ns2-PA 674 CG6501-PA 299..476 320..508 212 31.2 Plus