Clone GH06740 Report

Search the DGRC for GH06740

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:67
Well:40
Vector:pOT2
Associated Gene/TranscriptLrr47-RA
Protein status:GH06740.pep: gold
Preliminary Size:1656
Sequenced Size:1593

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6098 2001-01-01 Release 2 assignment
CG6098 2001-09-19 Blastp of sequenced clone
CG6098 2003-01-01 Sim4 clustering to Release 3
Lrr47 2008-04-29 Release 5.5 accounting
Lrr47 2008-08-15 Release 5.9 accounting
Lrr47 2008-12-18 5.12 accounting

Clone Sequence Records

GH06740.complete Sequence

1593 bp (1593 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058306

> GH06740.complete
CCAAAACAAATGTTTAGTTTTATTTAGCGGGTTTTTTTTTTGTTTATTGT
CTAATCACTGCCTCGCCATGAAGATTTTGTGCGAAGTTCAGGTGGTGAAT
CGCGCCACCCAGACGAACAAAACGCCACGTCCCGTGAAATCCACACTGGC
CATTGGCTACAAGCAAAGCGCCAGGGATGCGAATGGAAACACCAAGAAGG
AGCTGGAAATGGTGCTCTTTAGTGGACAAAACAAGACTGGAAATCGCTAC
AAGGTCAAGGATAACATTCATGTCGTGCACACCAAGTTTGTGCTGGATGG
GAAGACCACCATTGGTTTCATACAGCCGCCAGATAACCTGCTTATTAAGT
GCGATCCTATCCAGCTGAAAGGATTCCTGCAGACCCTCAAGCTGGGCATG
GATGGCAAGGACGCCATCAATTTGAGACTGAACATAAACGCCGCTACGGC
AATTCCGCAGAAGGCACAGCCCCAGGTGCGCATGGTAATCAGCAAGCGGA
GCGAGTATCCCATCAAGGGATTTCCGCGCACCCTCAAATCGCTGACCATC
AACAACAGCCAGCTAGTGAAGCTGAGCTTCGAGATATGCACCCTGCGCAA
CCTCACAAAGCTGGATGTCAGCGGTAACAAGCTGACCAAGATTCCCTCGG
AGCTGGGTCGTCTTCCGCTCACCTCGCTGCACCTGGGCAACAACTTACTG
GGTACTCAGAATGACTGGTGCTGGCTGCGGGGCACTAAGCTCTGTCAGTC
GCTCGGCGAGCTGGATCTGTCGGGCAACGGGCTGACTTACTTTCCACCTC
CGCTGGTTAAATTCGAGTCGCTTGTATCGCTGAATCTCAACAACAATCTG
CTGAGTCGGCTGCCCTTTGCCATTCGCCGGATGAAAGCACTGCGTAAACT
TTATGTGTGCAGCAACGAACTAGAGTCCCTGCCCTCTGCTGTCGAGGATC
TACGGATCGACCTGTTGGATGTGTGGGGCAATTGCTTCAAGGAATTCAAT
GCAGATGCCGCGCAGCAAATGTATCTGCAAAAGGCGGCATCTAATTCGCC
GCAACCTTTGTGGCTTTTGGGAGCTCGAGCTGTGGATAAGTATATGCTGC
CCTTGTCCGCGGGCTCTATTCCCGCTGTGCTAATAGATCTGATAAGGGAG
GCTCCCAGATGCCCGTGCGGCGAGCTCTGCTATGCCCAGCGCAAGGAGGA
CCTCTTCCAGCGCGTTGTTCAGCCGAAATTCATCACCGTTAAGAACCTCA
CATACAGTCGTGAGCATCAGATCTACGCGGATGTGGTCCTCTGTGACTCT
AGGTGCAGTGCATCTGCTGAACTGAAGTTGCTCTTCAATATAATCTTTTC
CTGATTGAATCAGATGGTGTACATTTTTAGCTATTAGTCAAAGATTTCTT
TAAATTATTTCACTAAACCACATCATTGATCCAAAATTAATTGGCGCGGA
GCACTTATTTAAGTATACGTATTTTTATATACTTAATCATTAATCATTGC
TCGGTTATGTTTTCATTCACCGTATTTGTTATACTTGTACTGCCAATAAA
TGCGAATTAACGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH06740.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
Lrr47-RA 1633 Lrr47-RA 27..1592 1..1566 7830 100 Plus
Lrr47.a 1940 Lrr47.a 27..1592 1..1566 7830 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10516873..10517799 639..1565 4635 100 Plus
chr2L 23010047 chr2L 10516174..10516813 1..640 3200 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:35:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10518058..10518985 639..1566 4640 100 Plus
2L 23513712 2L 10517359..10517998 1..640 3200 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10518058..10518985 639..1566 4640 100 Plus
2L 23513712 2L 10517359..10517998 1..640 3200 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:56:59 has no hits.

GH06740.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:57:44 Download gff for GH06740.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10516174..10516813 1..640 100 -> Plus
chr2L 10516875..10517799 641..1565 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:21:29 Download gff for GH06740.complete
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 1..1287 68..1354 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:09:23 Download gff for GH06740.complete
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 1..1287 68..1354 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:50:12 Download gff for GH06740.complete
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 1..1287 68..1354 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:40:21 Download gff for GH06740.complete
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 1..1287 68..1354 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:48:47 Download gff for GH06740.complete
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 1..1287 68..1354 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:00:19 Download gff for GH06740.complete
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 23..1587 1..1565 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:09:23 Download gff for GH06740.complete
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 23..1587 1..1565 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:50:12 Download gff for GH06740.complete
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 25..1589 1..1565 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:40:21 Download gff for GH06740.complete
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 23..1587 1..1565 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:48:47 Download gff for GH06740.complete
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 25..1589 1..1565 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:57:44 Download gff for GH06740.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10517359..10517998 1..640 100 -> Plus
2L 10518060..10518984 641..1565 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:57:44 Download gff for GH06740.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10517359..10517998 1..640 100 -> Plus
2L 10518060..10518984 641..1565 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:57:44 Download gff for GH06740.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10517359..10517998 1..640 100 -> Plus
2L 10518060..10518984 641..1565 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:50:12 Download gff for GH06740.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10517359..10517998 1..640 100 -> Plus
arm_2L 10518060..10518984 641..1565 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:17:48 Download gff for GH06740.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10517359..10517998 1..640 100 -> Plus
2L 10518060..10518984 641..1565 100   Plus

GH06740.hyp Sequence

Translation from 1 to 1353

> GH06740.hyp
QNKCLVLFSGFFFCLLSNHCLAMKILCEVQVVNRATQTNKTPRPVKSTLA
IGYKQSARDANGNTKKELEMVLFSGQNKTGNRYKVKDNIHVVHTKFVLDG
KTTIGFIQPPDNLLIKCDPIQLKGFLQTLKLGMDGKDAINLRLNINAATA
IPQKAQPQVRMVISKRSEYPIKGFPRTLKSLTINNSQLVKLSFEICTLRN
LTKLDVSGNKLTKIPSELGRLPLTSLHLGNNLLGTQNDWCWLRGTKLCQS
LGELDLSGNGLTYFPPPLVKFESLVSLNLNNNLLSRLPFAIRRMKALRKL
YVCSNELESLPSAVEDLRIDLLDVWGNCFKEFNADAAQQMYLQKAASNSP
QPLWLLGARAVDKYMLPLSAGSIPAVLIDLIREAPRCPCGELCYAQRKED
LFQRVVQPKFITVKNLTYSREHQIYADVVLCDSRCSASAELKLLFNIIFS
*

GH06740.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
Lrr47-PB 428 CG6098-PB 1..428 23..450 2209 100 Plus
Lrr47-PA 428 CG6098-PA 1..428 23..450 2209 100 Plus
CG32687-PB 377 CG32687-PB 23..224 142..318 164 27.2 Plus
CG32687-PA 377 CG32687-PA 23..224 142..318 164 27.2 Plus
scrib-PC 1247 CG43398-PC 192..329 170..311 162 37.1 Plus

GH06740.pep Sequence

Translation from 67 to 1353

> GH06740.pep
MKILCEVQVVNRATQTNKTPRPVKSTLAIGYKQSARDANGNTKKELEMVL
FSGQNKTGNRYKVKDNIHVVHTKFVLDGKTTIGFIQPPDNLLIKCDPIQL
KGFLQTLKLGMDGKDAINLRLNINAATAIPQKAQPQVRMVISKRSEYPIK
GFPRTLKSLTINNSQLVKLSFEICTLRNLTKLDVSGNKLTKIPSELGRLP
LTSLHLGNNLLGTQNDWCWLRGTKLCQSLGELDLSGNGLTYFPPPLVKFE
SLVSLNLNNNLLSRLPFAIRRMKALRKLYVCSNELESLPSAVEDLRIDLL
DVWGNCFKEFNADAAQQMYLQKAASNSPQPLWLLGARAVDKYMLPLSAGS
IPAVLIDLIREAPRCPCGELCYAQRKEDLFQRVVQPKFITVKNLTYSREH
QIYADVVLCDSRCSASAELKLLFNIIFS*

GH06740.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15800-PA 428 GF15800-PA 1..427 1..427 1768 80.1 Plus
Dana\GF16442-PA 1847 GF16442-PA 192..369 148..305 161 33.1 Plus
Dana\GF19554-PA 375 GF19554-PA 38..220 148..296 157 29 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23649-PA 428 GG23649-PA 1..428 1..428 2034 91.4 Plus
Dere\GG18917-PA 371 GG18917-PA 49..218 156..296 157 30.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10410-PA 431 GH10410-PA 1..430 1..427 1624 71.4 Plus
Dgri\GH12711-PA 368 GH12711-PA 23..216 120..296 163 27.5 Plus
Dgri\GH18723-PA 1864 GH18723-PA 192..369 148..305 162 33.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
Lrr47-PB 428 CG6098-PB 1..428 1..428 2209 100 Plus
Lrr47-PA 428 CG6098-PA 1..428 1..428 2209 100 Plus
CG32687-PB 377 CG32687-PB 23..224 120..296 164 27.2 Plus
CG32687-PA 377 CG32687-PA 23..224 120..296 164 27.2 Plus
scrib-PC 1247 CG43398-PC 192..329 148..289 162 37.1 Plus
scrib-PI 1711 CG43398-PI 192..329 148..289 162 37.1 Plus
scrib-PP 1729 CG43398-PP 192..329 148..289 162 37.1 Plus
scrib-PB 1756 CG43398-PB 192..329 148..289 162 37.1 Plus
scrib-PA 1756 CG43398-PA 192..329 148..289 162 37.1 Plus
scrib-PU 1766 CG43398-PU 192..329 148..289 162 37.1 Plus
scrib-PD 1851 CG43398-PD 192..329 148..289 162 37.1 Plus
scrib-PH 1939 CG43398-PH 192..329 148..289 162 37.1 Plus
scrib-PR 1951 CG43398-PR 192..329 148..289 162 37.1 Plus
scrib-PK 2331 CG43398-PK 192..329 148..289 162 37.1 Plus
scrib-PJ 2426 CG43398-PJ 192..329 148..289 162 37.1 Plus
scrib-PT 2444 CG43398-PT 192..329 148..289 162 37.1 Plus
scrib-PM 2490 CG43398-PM 192..329 148..289 162 37.1 Plus
scrib-PO 2515 CG43398-PO 192..329 148..289 162 37.1 Plus
scrib-PN 2554 CG43398-PN 192..329 148..289 162 37.1 Plus
scrib-PQ 2577 CG43398-PQ 192..329 148..289 162 37.1 Plus
scrib-PL 2585 CG43398-PL 192..329 148..289 162 37.1 Plus
Lap1-PB 849 CG10255-PB 25..192 145..309 161 33.5 Plus
Lap1-PA 849 CG10255-PA 25..192 145..309 161 33.5 Plus
Lrch-PA 809 CG6860-PA 134..278 149..292 160 37.5 Plus
Lrch-PC 1079 CG6860-PC 134..278 149..292 160 37.5 Plus
Lrch-PB 1135 CG6860-PB 134..278 149..292 160 37.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23304-PA 428 GI23304-PA 1..427 1..427 1576 71.2 Plus
Dmoj\GI22874-PA 1865 GI22874-PA 192..369 148..305 155 32.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26611-PA 428 GL26611-PA 1..427 1..427 1799 78.2 Plus
Dper\GL14883-PA 372 GL14883-PA 49..217 156..296 162 30.1 Plus
Dper\GL23097-PA 1247 GL23097-PA 238..415 148..305 155 32.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19351-PA 428 GA19351-PA 1..427 1..427 1802 78.5 Plus
Dpse\GA17074-PA 372 GA17074-PA 49..217 156..296 161 30.1 Plus
Dpse\GA18897-PA 1889 GA18897-PA 192..369 148..305 155 32.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18513-PA 428 GM18513-PA 1..428 1..428 2042 93.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23713-PA 428 GD23713-PA 1..428 1..428 2073 94.6 Plus
Dsim\GD16031-PA 375 GD16031-PA 49..222 156..296 150 29.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23812-PA 428 GJ23812-PA 1..428 1..428 1720 74.3 Plus
Dvir\GJ14718-PA 373 GJ14718-PA 38..221 148..296 159 29.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14600-PA 376 GK14600-PA 1..367 1..365 1249 67.8 Plus
Dwil\GK14599-PA 428 GK14599-PA 1..428 1..428 1207 58.3 Plus
Dwil\GK18321-PA 293 GK18321-PA 1..293 1..331 933 58.8 Plus
Dwil\GK21072-PA 237 GK21072-PA 1..236 1..236 892 73.7 Plus
Dwil\GK12700-PA 195 GK12700-PA 1..192 1..192 787 77.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18468-PA 428 GE18468-PA 1..428 1..428 2049 92.1 Plus
Dyak\GE15388-PA 372 GE15388-PA 49..219 156..296 154 30.2 Plus