Clone GH07001 Report

Search the DGRC for GH07001

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:70
Well:1
Vector:pOT2
Associated Gene/Transcriptsut4-RA
Protein status:GH07001.pep: gold
Preliminary Size:1719
Sequenced Size:1640

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1380 2001-01-01 Release 2 assignment
CG1380 2001-10-10 Blastp of sequenced clone
CG1380 2003-01-01 Sim4 clustering to Release 3
sut4 2008-04-29 Release 5.5 accounting
sut4 2008-08-15 Release 5.9 accounting
sut4 2008-12-18 5.12 accounting

Clone Sequence Records

GH07001.complete Sequence

1640 bp (1640 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060641

> GH07001.complete
CACTAATAGTTAGAGTGTAATTTGCCTCTGTTTCAAAATTGTACAAATAT
AAATCGAAACACTGATTTTTTCATCGCGCATTTTATGTAAAAATGGGAAC
TGCCACTCAGTTTATTGTTGGTTTCATCGGCGCCCTGGGCGCCTTTTGTC
TAGGCGCAGTGATCGGCTGGTCAGGACCGGTGGAAAATGAAGTCAAGAAT
TCTAACGCGTACAACTTTACCCCTCGTCAAACGGAATGGGGCCTGGTGGG
ATCTCTGATGACTCTGGGTGCAGCTTTCTCGTGCATTCCGGTGGGCGTGC
TCATTGGTAAGATCGGGCGGAAGACGACAATGCTAATCCTGCTGCCACCG
TTCTTTATCGGATGGCTCCTGATCCTCCTGGCATCGCACATAGCAATGCT
GCTGCTCGGACGCTTCGTAGTGGGATTCTGCGGAGGAGCCTTCTGCGTGA
CTTGTCCCATGTACGTGACTGAGATAGCCCAGGTCCAGTACCGCGGAACC
ATGGGATGCTTCTTCCAGCTGCTAATCGTTTTTGGTATTCTGTACGCCTT
TGTGGTTGGAGGTTTTGTAAAGACCTTCTACTTTAATATTGCTTGCGCAA
TTTTGCCCGTAATCTTTTTTGTCTTGATGATTTTTATGCCGGAATCTCCG
ATTTTTCTGGCCCAAAAGGGAAAAGCCGAGAAGGCGGAGAAATCTCTTAA
ATTTCTGCGCGGAAAGGATGCGGATGTGAGCGGTGAGCTGAAGGAAATGA
GCGCCGAGGGCCAAAAGGAGAAGGCTAGCGTTGGGAAAATCCTATGCCGC
AGGATTACCCTCAAGGGGCTGTTCCTCTCCATCGGTCTCATGTTGTTCCA
GCAGATGACGGGCATCAATGCGATTATTTTCTATTCTACATTCATCTTTG
AGACGGCTGGATCGACCCTGGAGCCCAGAATATCTACAATTATTGTGGGC
ATTGTGCAGGCTATTGCCACTATCATTTCGATCCTGGTTATTGAGAAAGT
CGGTCGGAAGATACTCCTATTGGTGTCCGCCTGCATGATGGGTATCAGCA
CCCTGATCATGGCTCTTTACTTTGGCATGTTGATGAAATCTGGAGTCGGC
TGGCTGGCCCTAATTGCCGTTTGTGTTTTTATTATTGGATTCTCCCTGGG
ATTCGGTCCAGTTCCCTGGCTGATGATGGCCGAGCTCTTTGCCGAGGATG
TAAAGGCCCTAGCAGGATCGATTGCCGGGACTACAAATTGGTGTTTTGCT
TTTATCGTGACCCTTCTTTTCCCTGTTCTTAACGATATTATTGGAGCAAC
CGCGTGCTTTGCAATCTTCTTCGGATTTGCGGTGGCCGCCTTTGTCTTCA
TTCTCTTCCTAATTCCCGAGACAAAGGGAAAAACGCTTAACGAGATTCAG
GCCAAGATGGGCGAGAAGGCCGAATAGTACTTGCAATCTTTTGATATCAT
CAGGGATTCAAGTCTATGGATCTCTGACCAAACTTTTGATAAATTTTCGT
GGAATTGGAACTGAATATTTGTACCGTCAAATGCAATCAAATGCATTTAA
ATTTATGTCTTAACATTTTTCTACATGATGTTATTATGAATAAAATGCCA
CCTCTTGACATTTTAAAAAAAAAAAAAAAAAAAAAAAAAA

GH07001.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
sut4-RA 1625 sut4-RA 10..1625 1..1616 8080 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5972986..5974599 1614..1 7935 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:35:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10085440..10087055 1616..1 8080 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 10086639..10088254 1616..1 8080 100 Minus
Blast to na_te.dros performed on 2019-03-16 17:02:43 has no hits.

GH07001.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:03:25 Download gff for GH07001.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5972986..5974599 1..1614 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:21:44 Download gff for GH07001.complete
Subject Subject Range Query Range Percent Splice Strand
sut4-RA 1..1335 93..1427 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:55:34 Download gff for GH07001.complete
Subject Subject Range Query Range Percent Splice Strand
sut4-RA 1..1335 93..1427 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:50:57 Download gff for GH07001.complete
Subject Subject Range Query Range Percent Splice Strand
sut4-RA 1..1335 93..1427 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:24:37 Download gff for GH07001.complete
Subject Subject Range Query Range Percent Splice Strand
sut4-RA 1..1335 93..1427 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:49:52 Download gff for GH07001.complete
Subject Subject Range Query Range Percent Splice Strand
sut4-RA 1..1335 93..1427 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:41:20 Download gff for GH07001.complete
Subject Subject Range Query Range Percent Splice Strand
sut4-RA 10..1623 1..1614 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:55:34 Download gff for GH07001.complete
Subject Subject Range Query Range Percent Splice Strand
sut4-RA 10..1623 1..1614 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:50:57 Download gff for GH07001.complete
Subject Subject Range Query Range Percent Splice Strand
sut4-RA 73..1686 1..1614 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:24:37 Download gff for GH07001.complete
Subject Subject Range Query Range Percent Splice Strand
sut4-RA 10..1623 1..1614 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:49:52 Download gff for GH07001.complete
Subject Subject Range Query Range Percent Splice Strand
sut4-RA 73..1686 1..1614 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:03:25 Download gff for GH07001.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10085442..10087055 1..1614 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:03:25 Download gff for GH07001.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10085442..10087055 1..1614 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:03:25 Download gff for GH07001.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10085442..10087055 1..1614 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:50:57 Download gff for GH07001.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5972947..5974560 1..1614 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:01:50 Download gff for GH07001.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10086641..10088254 1..1614 100   Minus

GH07001.pep Sequence

Translation from 92 to 1426

> GH07001.pep
MGTATQFIVGFIGALGAFCLGAVIGWSGPVENEVKNSNAYNFTPRQTEWG
LVGSLMTLGAAFSCIPVGVLIGKIGRKTTMLILLPPFFIGWLLILLASHI
AMLLLGRFVVGFCGGAFCVTCPMYVTEIAQVQYRGTMGCFFQLLIVFGIL
YAFVVGGFVKTFYFNIACAILPVIFFVLMIFMPESPIFLAQKGKAEKAEK
SLKFLRGKDADVSGELKEMSAEGQKEKASVGKILCRRITLKGLFLSIGLM
LFQQMTGINAIIFYSTFIFETAGSTLEPRISTIIVGIVQAIATIISILVI
EKVGRKILLLVSACMMGISTLIMALYFGMLMKSGVGWLALIAVCVFIIGF
SLGFGPVPWLMMAELFAEDVKALAGSIAGTTNWCFAFIVTLLFPVLNDII
GATACFAIFFGFAVAAFVFILFLIPETKGKTLNEIQAKMGEKAE*

GH07001.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12909-PA 442 GF12909-PA 1..440 1..440 1608 71.4 Plus
Dana\GF11588-PA 467 GF11588-PA 9..448 6..436 1191 51.1 Plus
Dana\GF10864-PA 543 GF10864-PA 100..525 23..439 1036 45.8 Plus
Dana\GF16361-PA 515 GF16361-PA 41..509 6..436 780 36.1 Plus
Dana\GF13114-PA 894 GF13114-PA 430..874 3..439 736 38.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25232-PA 444 GG25232-PA 1..444 1..444 2082 90.1 Plus
Dere\GG21040-PA 465 GG21040-PA 9..460 6..444 1211 51.5 Plus
Dere\GG13801-PA 538 GG13801-PA 99..524 23..439 1052 47.4 Plus
Dere\GG13076-PA 494 GG13076-PA 39..489 6..437 779 35.8 Plus
Dere\GG20213-PA 856 GG20213-PA 394..836 5..439 736 38.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22816-PA 441 GH22816-PA 1..440 1..440 1371 59.8 Plus
Dgri\GH22817-PA 441 GH22817-PA 1..439 1..440 1201 52.3 Plus
Dgri\GH21817-PA 475 GH21817-PA 9..461 6..444 1138 50.3 Plus
Dgri\GH14492-PA 541 GH14492-PA 100..525 23..439 1069 47.2 Plus
Dgri\GH18927-PA 509 GH18927-PA 45..503 4..436 790 37.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
sut4-PA 444 CG1380-PA 1..444 1..444 2256 100 Plus
CG6484-PA 465 CG6484-PA 9..448 6..436 1210 51.8 Plus
CG10960-PA 471 CG10960-PA 15..457 6..439 1098 48.3 Plus
CG10960-PC 471 CG10960-PC 15..457 6..439 1098 48.3 Plus
CG10960-PB 539 CG10960-PB 83..525 6..439 1098 48.3 Plus
CG1208-PB 496 CG1208-PB 39..491 6..437 807 36.5 Plus
CG1208-PC 502 CG1208-PC 45..497 6..437 807 36.5 Plus
Tret1-2-PA 488 CG8234-PA 25..469 3..439 773 38.2 Plus
Tret1-1-PA 857 CG30035-PA 395..837 5..439 771 38.7 Plus
Tret1-1-PB 489 CG30035-PB 25..469 3..439 770 38.6 Plus
CG1213-PD 491 CG1213-PD 43..489 7..442 699 34.4 Plus
CG1213-PB 491 CG1213-PB 43..489 7..442 699 34.4 Plus
CG1213-PC 491 CG1213-PC 43..489 7..442 699 34.4 Plus
CG1213-PA 491 CG1213-PA 43..489 7..442 699 34.4 Plus
Glut3-PA 507 CG3853-PA 60..487 15..440 567 30.9 Plus
CG33281-PA 467 CG33281-PA 6..467 2..439 514 30.2 Plus
CG14606-PC 466 CG14606-PC 19..464 6..432 461 26.6 Plus
CG14606-PA 438 CG14606-PA 6..436 21..432 459 26.8 Plus
CG15408-PA 466 CG15408-PA 35..463 21..432 456 26.3 Plus
CG33282-PB 460 CG33282-PB 14..459 3..434 451 26.8 Plus
CG3285-PB 466 CG3285-PB 25..463 6..432 441 26.3 Plus
CG3285-PA 466 CG3285-PA 25..463 6..432 441 26.3 Plus
Glut1-PM 478 CG43946-PM 63..468 46..437 429 30.2 Plus
Glut1-PB 481 CG43946-PB 63..468 46..437 429 30.2 Plus
Glut1-PC 481 CG43946-PC 63..468 46..437 429 30.2 Plus
Glut1-PD 508 CG43946-PD 63..468 46..437 429 30.2 Plus
Glut1-PZ 548 CG43946-PZ 63..468 46..437 429 30.2 Plus
Glut1-PJ 548 CG43946-PJ 63..468 46..437 429 30.2 Plus
Glut1-PAA 622 CG43946-PAA 63..468 46..437 429 30.2 Plus
Glut1-PY 662 CG43946-PY 63..468 46..437 429 30.2 Plus
Glut1-PV 717 CG43946-PV 299..704 46..437 429 30.2 Plus
Glut1-PW 744 CG43946-PW 299..704 46..437 429 30.2 Plus
Glut1-PX 784 CG43946-PX 299..704 46..437 429 30.2 Plus
Glut1-PQ 1326 CG43946-PQ 63..468 46..437 429 30.2 Plus
Glut1-PP 1440 CG43946-PP 63..468 46..437 429 30.2 Plus
CG15406-PA 469 CG15406-PA 18..467 6..432 425 27.5 Plus
sut1-PA 507 CG8714-PA 93..494 49..435 424 31.3 Plus
Glut1-PE 488 CG43946-PE 63..475 46..437 420 29.6 Plus
Glut1-PO 571 CG43946-PO 119..531 46..437 420 29.6 Plus
Glut1-PL 602 CG43946-PL 150..562 46..437 420 29.6 Plus
Glut1-PR 802 CG43946-PR 350..762 46..437 420 29.6 Plus
CG14605-PD 432 CG14605-PD 6..432 21..434 417 26.7 Plus
CG14605-PB 432 CG14605-PB 6..432 21..434 417 26.7 Plus
CG4607-PB 525 CG4607-PB 45..498 6..438 401 27.2 Plus
CG4607-PA 525 CG4607-PA 45..498 6..438 401 27.2 Plus
CG8249-PC 521 CG8249-PC 45..493 6..436 381 23.7 Plus
CG8249-PB 521 CG8249-PB 45..493 6..436 381 23.7 Plus
CG8249-PA 521 CG8249-PA 45..493 6..436 381 23.7 Plus
CG4797-PB 533 CG4797-PB 68..497 15..436 370 25.3 Plus
sut3-PB 439 CG17976-PB 37..430 51..439 361 27 Plus
sut3-PA 476 CG17976-PA 74..467 51..439 361 27 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20788-PA 471 GI20788-PA 9..448 6..436 1161 51.6 Plus
Dmoj\GI21191-PA 382 GI21191-PA 19..370 19..371 1090 59.2 Plus
Dmoj\GI13648-PA 544 GI13648-PA 102..528 23..440 1070 47.8 Plus
Dmoj\GI21192-PA 415 GI21192-PA 1..394 1..393 1002 48.5 Plus
Dmoj\GI21095-PA 440 GI21095-PA 1..438 1..438 761 33.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16864-PA 445 GL16864-PA 19..436 19..436 1461 67 Plus
Dper\GL17690-PA 464 GL17690-PA 9..448 6..436 1205 52.7 Plus
Dper\GL16863-PA 264 GL16863-PA 1..255 182..436 901 67.5 Plus
Dper\GL22895-PA 467 GL22895-PA 100..464 23..378 832 45.5 Plus
Dper\GL24034-PA 512 GL24034-PA 41..512 6..442 779 36.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12538-PA 445 GA12538-PA 1..436 1..436 1514 67.2 Plus
Dpse\GA24319-PA 445 GA24319-PA 19..436 19..436 1465 67.5 Plus
Dpse\GA19628-PA 464 GA19628-PA 9..448 6..436 1205 52.7 Plus
Dpse\GA23919-PA 549 GA23919-PA 100..525 23..439 1022 46.9 Plus
Dpse\GA26484-PB 518 GA26484-PB 47..518 6..442 780 36.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20552-PA 444 GM20552-PA 1..444 1..444 2199 97.1 Plus
Dsec\GM19968-PA 465 GM19968-PA 9..448 6..436 1162 52 Plus
Dsec\GM24627-PA 539 GM24627-PA 100..525 23..439 1057 48.1 Plus
Dsec\GM10847-PA 496 GM10847-PA 39..491 6..437 748 35.7 Plus
Dsec\GM21299-PA 488 GM21299-PA 25..469 3..439 733 37.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD26006-PA 444 GD26006-PA 1..444 1..444 2188 96.8 Plus
Dsim\GD25462-PA 465 GD25462-PA 9..448 6..436 1157 52.3 Plus
Dsim\GD12693-PA 497 GD12693-PA 100..487 23..401 964 48.7 Plus
Dsim\GD19829-PA 496 GD19829-PA 39..491 6..437 749 35.9 Plus
Dsim\GD10808-PA 488 GD10808-PA 25..469 3..439 743 38.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20794-PA 441 GJ20794-PA 1..440 1..440 1295 55 Plus
Dvir\GJ20522-PA 465 GJ20522-PA 9..448 6..436 1183 53.4 Plus
Dvir\GJ21818-PA 484 GJ21818-PA 25..464 6..436 1167 52.3 Plus
Dvir\GJ21817-PA 501 GJ21817-PA 9..448 6..436 1137 50.5 Plus
Dvir\GJ20795-PA 441 GJ20795-PA 1..436 1..436 1136 51.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10669-PA 467 GK10669-PA 9..460 6..444 1123 50 Plus
Dwil\GK19309-PA 361 GK19309-PA 1..358 80..437 1083 57.5 Plus
Dwil\GK17357-PA 552 GK17357-PA 114..538 23..439 1071 48.2 Plus
Dwil\GK14443-PA 507 GK14443-PA 38..506 6..442 812 37.5 Plus
Dwil\GK22112-PA 872 GK22112-PA 409..852 5..439 755 39.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21786-PA 444 GE21786-PA 1..444 1..444 2090 90.5 Plus
Dyak\GE13983-PA 465 GE13983-PA 9..460 6..444 1217 52.2 Plus
Dyak\GE20094-PA 539 GE20094-PA 100..525 23..439 1056 48.6 Plus
Dyak\GE10173-PA 500 GE10173-PA 39..495 6..437 754 36.4 Plus
Dyak\GE12373-PA 856 GE12373-PA 394..836 5..439 734 38.4 Plus

GH07001.hyp Sequence

Translation from 92 to 1426

> GH07001.hyp
MGTATQFIVGFIGALGAFCLGAVIGWSGPVENEVKNSNAYNFTPRQTEWG
LVGSLMTLGAAFSCIPVGVLIGKIGRKTTMLILLPPFFIGWLLILLASHI
AMLLLGRFVVGFCGGAFCVTCPMYVTEIAQVQYRGTMGCFFQLLIVFGIL
YAFVVGGFVKTFYFNIACAILPVIFFVLMIFMPESPIFLAQKGKAEKAEK
SLKFLRGKDADVSGELKEMSAEGQKEKASVGKILCRRITLKGLFLSIGLM
LFQQMTGINAIIFYSTFIFETAGSTLEPRISTIIVGIVQAIATIISILVI
EKVGRKILLLVSACMMGISTLIMALYFGMLMKSGVGWLALIAVCVFIIGF
SLGFGPVPWLMMAELFAEDVKALAGSIAGTTNWCFAFIVTLLFPVLNDII
GATACFAIFFGFAVAAFVFILFLIPETKGKTLNEIQAKMGEKAE*

GH07001.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
sut4-PA 444 CG1380-PA 1..444 1..444 2256 100 Plus
CG6484-PA 465 CG6484-PA 9..448 6..436 1210 51.8 Plus
CG10960-PA 471 CG10960-PA 15..457 6..439 1098 48.3 Plus
CG10960-PC 471 CG10960-PC 15..457 6..439 1098 48.3 Plus
CG10960-PB 539 CG10960-PB 83..525 6..439 1098 48.3 Plus