Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH07049.complete Sequence
1215 bp (1215 high quality bases) assembled on 2002-05-17
GenBank Submission: AY118749
> GH07049.complete
TCACATCTCCAAGCGGTCAGCATGAAGTCGGTTATTATTCTCTTAGCCCT
GGTGGCTTTCTGCCACGCAGCACCTCTGGATGTCAAGGAGTCTACCTCTG
AGGAGCTCTCTAGGCCCAGTCCCATCAGCCCCGATGTGCTCGTTGATCCC
AAGCCCACCGCCAAGGTAGTCTTGCTGAAGGATGCTCCCGTCCTGAATCG
CCAGAGGCGTAATGAACCCAAGAAGCCCGACAGCGTGGAGGCCCACGAAC
AGCTGCATCACTCGCAGCCGGCCGTTCCTATTCATGACCAGAAGCCTTCT
CCGGCTGGGCCACAGGACCACAAGCGCAAGAGGGAAGCTCACCACGAGGA
GGGTCACCATGGTGACGATGCAGTGCCCCAGAAGGAGGAAGTGAAGCAAG
CTCCCGAGGACCATGACGCCAAGAAGGAAAAGAGAGAGGCTCACCATGAG
GAGGGTCACCAAGACCATGAGGCTCCTCATAAGGAGGAAGTGAAGCAGGC
CCCCGAAGCTCATGATGCCAAAAGGGAAAAGCGAGAGGCTCACCACGAGG
AAGGCCACCATGGTGATGATGCAGCTCCACATAAGGAGGAAGTGAAGCAG
GCTCCCGAAACACATGAGGACAAGAAGGAAAAGAGGGAAGCTCACCACGA
GGAGGGCCACAAGGATGAGGCAGGTGATCGTCCTCAGGTGGAGGATCTTT
CGCTGCCCCATGCCCTGCCCGCTGTGGCCCACACCGCCGAGCTGCCCAAG
AAGCAGGAAAAGCGCGAGACTGTGGAGAAACCCGACAGCGTGAAGGCCCG
TGAGTCGCTCCAGCACAATCCCCAGCGATCCCAGGAGCTCCACAAGGCCA
TCGAATCTCTGGCCGGTGGAAAGGCGCCGGAACAGCGTCACCAGCGCGAT
ATTCCCGTGCCCACGCAAACCAAAGCCACCACCACCACCGATCTCCCATC
CACCACCAAATCGGAGCTGGAAAGCACCACTCCGTCCATCCACAATCTCC
ACATCCCCCATCCCATTCCCGTGGCCGAGCTCTTCGAGAAGAACAAGCAC
GCGGATAAGTCCACTTCCAGTTCCGAGGAAAGCAAGGAGAAAGCTAAGGC
CTAGGCTTCCTATGTTAAGAGTCGCTAATGGGACCATCACGAGATTTGTA
GTCAGCGAAACGAACTAAAATAAACACAAATATTTACATGCTTATATAAA
AAAAAAAAAAAAAAA
GH07049.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:06:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6409-RA | 1516 | CG6409-RA | 234..1435 | 1..1202 | 6010 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:21:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 10871779..10872939 | 1197..34 | 5530 | 98.5 | Minus |
chr3L | 24539361 | chr3L | 10872415..10872645 | 660..430 | 425 | 80.8 | Minus |
chr3L | 24539361 | chr3L | 10872313..10872492 | 558..382 | 385 | 82.2 | Minus |
chr3L | 24539361 | chr3L | 10872313..10872435 | 459..337 | 345 | 85.4 | Minus |
chr3L | 24539361 | chr3L | 10872514..10872636 | 660..538 | 330 | 84.6 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:35:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:21:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10880694..10881862 | 1202..34 | 5845 | 100 | Minus |
3L | 28110227 | 3L | 10881236..10881466 | 558..328 | 410 | 80.3 | Minus |
3L | 28110227 | 3L | 10881338..10881568 | 660..430 | 410 | 80.3 | Minus |
3L | 28110227 | 3L | 10881236..10881358 | 459..337 | 345 | 85.4 | Minus |
3L | 28110227 | 3L | 10881437..10881559 | 660..538 | 345 | 85.4 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 10873794..10874962 | 1202..34 | 5845 | 100 | Minus |
3L | 28103327 | 3L | 10875107..10875139 | 33..1 | 165 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 05:21:32 has no hits.
GH07049.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:22:38 Download gff for
GH07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 10871779..10872939 | 34..1197 | 98 | <- | Minus |
chr3L | 10873084..10873116 | 1..33 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:21:55 Download gff for
GH07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 1..1083 | 22..1104 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:49:25 Download gff for
GH07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 1..1083 | 22..1104 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:35:40 Download gff for
GH07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 1..1083 | 22..1104 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:42:04 Download gff for
GH07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 1..1083 | 22..1104 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:01:25 Download gff for
GH07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 1..1083 | 22..1104 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:26:25 Download gff for
GH07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 13..1209 | 1..1197 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:49:25 Download gff for
GH07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 13..1209 | 1..1197 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:40 Download gff for
GH07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 16..1212 | 1..1197 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:42:05 Download gff for
GH07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 13..1209 | 1..1197 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:01:25 Download gff for
GH07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 16..1212 | 1..1197 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:22:38 Download gff for
GH07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10880699..10881862 | 34..1197 | 100 | <- | Minus |
3L | 10882007..10882039 | 1..33 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:22:38 Download gff for
GH07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10880699..10881862 | 34..1197 | 100 | <- | Minus |
3L | 10882007..10882039 | 1..33 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:22:38 Download gff for
GH07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10880699..10881862 | 34..1197 | 100 | <- | Minus |
3L | 10882007..10882039 | 1..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:40 Download gff for
GH07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10873799..10874962 | 34..1197 | 100 | <- | Minus |
arm_3L | 10875107..10875139 | 1..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:14:18 Download gff for
GH07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10873799..10874962 | 34..1197 | 100 | <- | Minus |
3L | 10875107..10875139 | 1..33 | 100 | | Minus |
GH07049.hyp Sequence
Translation from 1 to 1103
> GH07049.hyp
SHLQAVSMKSVIILLALVAFCHAAPLDVKESTSEELSRPSPISPDVLVDP
KPTAKVVLLKDAPVLNRQRRNEPKKPDSVEAHEQLHHSQPAVPIHDQKPS
PAGPQDHKRKREAHHEEGHHGDDAVPQKEEVKQAPEDHDAKKEKREAHHE
EGHQDHEAPHKEEVKQAPEAHDAKREKREAHHEEGHHGDDAAPHKEEVKQ
APETHEDKKEKREAHHEEGHKDEAGDRPQVEDLSLPHALPAVAHTAELPK
KQEKRETVEKPDSVKARESLQHNPQRSQELHKAIESLAGGKAPEQRHQRD
IPVPTQTKATTTTDLPSTTKSELESTTPSIHNLHIPHPIPVAELFEKNKH
ADKSTSSSEESKEKAKA*
GH07049.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:24:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6409-PB | 360 | CG6409-PB | 1..360 | 8..367 | 1907 | 100 | Plus |
CG6409-PA | 360 | CG6409-PA | 1..360 | 8..367 | 1907 | 100 | Plus |
GH07049.pep Sequence
Translation from 21 to 1103
> GH07049.pep
MKSVIILLALVAFCHAAPLDVKESTSEELSRPSPISPDVLVDPKPTAKVV
LLKDAPVLNRQRRNEPKKPDSVEAHEQLHHSQPAVPIHDQKPSPAGPQDH
KRKREAHHEEGHHGDDAVPQKEEVKQAPEDHDAKKEKREAHHEEGHQDHE
APHKEEVKQAPEAHDAKREKREAHHEEGHHGDDAAPHKEEVKQAPETHED
KKEKREAHHEEGHKDEAGDRPQVEDLSLPHALPAVAHTAELPKKQEKRET
VEKPDSVKARESLQHNPQRSQELHKAIESLAGGKAPEQRHQRDIPVPTQT
KATTTTDLPSTTKSELESTTPSIHNLHIPHPIPVAELFEKNKHADKSTSS
SEESKEKAKA*
GH07049.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:47:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF23817-PA | 490 | GF23817-PA | 1..90 | 1..92 | 276 | 64.1 | Plus |
Dana\GF23817-PA | 490 | GF23817-PA | 343..475 | 199..340 | 219 | 43.9 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG13957-PA | 293 | GG13957-PA | 1..293 | 1..360 | 1090 | 71.7 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:47:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH17045-PA | 420 | GH17045-PA | 1..394 | 1..346 | 270 | 36.1 | Plus |
Dgri\GH23227-PA | 474 | GH23227-PA | 1..445 | 1..346 | 243 | 34.5 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6409-PB | 360 | CG6409-PB | 1..360 | 1..360 | 1907 | 100 | Plus |
CG6409-PA | 360 | CG6409-PA | 1..360 | 1..360 | 1907 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:47:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL21810-PA | 376 | GL21810-PA | 1..355 | 1..342 | 434 | 41 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA19570-PA | 466 | GA19570-PA | 1..112 | 1..106 | 253 | 53.8 | Plus |
Dpse\GA19570-PA | 466 | GA19570-PA | 303..445 | 227..342 | 216 | 40.1 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM24797-PA | 360 | GM24797-PA | 1..360 | 1..360 | 1585 | 93.6 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:47:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ13320-PA | 416 | GJ13320-PA | 3..413 | 5..342 | 200 | 30.2 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK13746-PA | 390 | GK13746-PA | 71..367 | 97..338 | 184 | 32.5 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE20257-PA | 327 | GE20257-PA | 1..327 | 1..360 | 1203 | 76 | Plus |