Clone GH07049 Report

Search the DGRC for GH07049

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:70
Well:49
Vector:pOT2
Associated Gene/TranscriptCG6409-RA
Protein status:GH07049.pep: gold
Preliminary Size:1300
Sequenced Size:1215

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6409 2001-01-01 Release 2 assignment
CG6409 2002-05-17 Blastp of sequenced clone
CG6409 2003-01-01 Sim4 clustering to Release 3
CG6409 2008-04-29 Release 5.5 accounting
CG6409 2008-08-15 Release 5.9 accounting
CG6409 2008-12-18 5.12 accounting

Clone Sequence Records

GH07049.complete Sequence

1215 bp (1215 high quality bases) assembled on 2002-05-17

GenBank Submission: AY118749

> GH07049.complete
TCACATCTCCAAGCGGTCAGCATGAAGTCGGTTATTATTCTCTTAGCCCT
GGTGGCTTTCTGCCACGCAGCACCTCTGGATGTCAAGGAGTCTACCTCTG
AGGAGCTCTCTAGGCCCAGTCCCATCAGCCCCGATGTGCTCGTTGATCCC
AAGCCCACCGCCAAGGTAGTCTTGCTGAAGGATGCTCCCGTCCTGAATCG
CCAGAGGCGTAATGAACCCAAGAAGCCCGACAGCGTGGAGGCCCACGAAC
AGCTGCATCACTCGCAGCCGGCCGTTCCTATTCATGACCAGAAGCCTTCT
CCGGCTGGGCCACAGGACCACAAGCGCAAGAGGGAAGCTCACCACGAGGA
GGGTCACCATGGTGACGATGCAGTGCCCCAGAAGGAGGAAGTGAAGCAAG
CTCCCGAGGACCATGACGCCAAGAAGGAAAAGAGAGAGGCTCACCATGAG
GAGGGTCACCAAGACCATGAGGCTCCTCATAAGGAGGAAGTGAAGCAGGC
CCCCGAAGCTCATGATGCCAAAAGGGAAAAGCGAGAGGCTCACCACGAGG
AAGGCCACCATGGTGATGATGCAGCTCCACATAAGGAGGAAGTGAAGCAG
GCTCCCGAAACACATGAGGACAAGAAGGAAAAGAGGGAAGCTCACCACGA
GGAGGGCCACAAGGATGAGGCAGGTGATCGTCCTCAGGTGGAGGATCTTT
CGCTGCCCCATGCCCTGCCCGCTGTGGCCCACACCGCCGAGCTGCCCAAG
AAGCAGGAAAAGCGCGAGACTGTGGAGAAACCCGACAGCGTGAAGGCCCG
TGAGTCGCTCCAGCACAATCCCCAGCGATCCCAGGAGCTCCACAAGGCCA
TCGAATCTCTGGCCGGTGGAAAGGCGCCGGAACAGCGTCACCAGCGCGAT
ATTCCCGTGCCCACGCAAACCAAAGCCACCACCACCACCGATCTCCCATC
CACCACCAAATCGGAGCTGGAAAGCACCACTCCGTCCATCCACAATCTCC
ACATCCCCCATCCCATTCCCGTGGCCGAGCTCTTCGAGAAGAACAAGCAC
GCGGATAAGTCCACTTCCAGTTCCGAGGAAAGCAAGGAGAAAGCTAAGGC
CTAGGCTTCCTATGTTAAGAGTCGCTAATGGGACCATCACGAGATTTGTA
GTCAGCGAAACGAACTAAAATAAACACAAATATTTACATGCTTATATAAA
AAAAAAAAAAAAAAA

GH07049.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6409-RA 1516 CG6409-RA 234..1435 1..1202 6010 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 10871779..10872939 1197..34 5530 98.5 Minus
chr3L 24539361 chr3L 10872415..10872645 660..430 425 80.8 Minus
chr3L 24539361 chr3L 10872313..10872492 558..382 385 82.2 Minus
chr3L 24539361 chr3L 10872313..10872435 459..337 345 85.4 Minus
chr3L 24539361 chr3L 10872514..10872636 660..538 330 84.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:35:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10880694..10881862 1202..34 5845 100 Minus
3L 28110227 3L 10881236..10881466 558..328 410 80.3 Minus
3L 28110227 3L 10881338..10881568 660..430 410 80.3 Minus
3L 28110227 3L 10881236..10881358 459..337 345 85.4 Minus
3L 28110227 3L 10881437..10881559 660..538 345 85.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 10873794..10874962 1202..34 5845 100 Minus
3L 28103327 3L 10875107..10875139 33..1 165 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:21:32 has no hits.

GH07049.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:22:38 Download gff for GH07049.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 10871779..10872939 34..1197 98 <- Minus
chr3L 10873084..10873116 1..33 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:21:55 Download gff for GH07049.complete
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 1..1083 22..1104 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:49:25 Download gff for GH07049.complete
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 1..1083 22..1104 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:35:40 Download gff for GH07049.complete
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 1..1083 22..1104 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:42:04 Download gff for GH07049.complete
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 1..1083 22..1104 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:01:25 Download gff for GH07049.complete
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 1..1083 22..1104 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:26:25 Download gff for GH07049.complete
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 13..1209 1..1197 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:49:25 Download gff for GH07049.complete
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 13..1209 1..1197 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:40 Download gff for GH07049.complete
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 16..1212 1..1197 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:42:05 Download gff for GH07049.complete
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 13..1209 1..1197 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:01:25 Download gff for GH07049.complete
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 16..1212 1..1197 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:22:38 Download gff for GH07049.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10880699..10881862 34..1197 100 <- Minus
3L 10882007..10882039 1..33 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:22:38 Download gff for GH07049.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10880699..10881862 34..1197 100 <- Minus
3L 10882007..10882039 1..33 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:22:38 Download gff for GH07049.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10880699..10881862 34..1197 100 <- Minus
3L 10882007..10882039 1..33 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:40 Download gff for GH07049.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10873799..10874962 34..1197 100 <- Minus
arm_3L 10875107..10875139 1..33 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:14:18 Download gff for GH07049.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10873799..10874962 34..1197 100 <- Minus
3L 10875107..10875139 1..33 100   Minus

GH07049.hyp Sequence

Translation from 1 to 1103

> GH07049.hyp
SHLQAVSMKSVIILLALVAFCHAAPLDVKESTSEELSRPSPISPDVLVDP
KPTAKVVLLKDAPVLNRQRRNEPKKPDSVEAHEQLHHSQPAVPIHDQKPS
PAGPQDHKRKREAHHEEGHHGDDAVPQKEEVKQAPEDHDAKKEKREAHHE
EGHQDHEAPHKEEVKQAPEAHDAKREKREAHHEEGHHGDDAAPHKEEVKQ
APETHEDKKEKREAHHEEGHKDEAGDRPQVEDLSLPHALPAVAHTAELPK
KQEKRETVEKPDSVKARESLQHNPQRSQELHKAIESLAGGKAPEQRHQRD
IPVPTQTKATTTTDLPSTTKSELESTTPSIHNLHIPHPIPVAELFEKNKH
ADKSTSSSEESKEKAKA*

GH07049.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6409-PB 360 CG6409-PB 1..360 8..367 1907 100 Plus
CG6409-PA 360 CG6409-PA 1..360 8..367 1907 100 Plus

GH07049.pep Sequence

Translation from 21 to 1103

> GH07049.pep
MKSVIILLALVAFCHAAPLDVKESTSEELSRPSPISPDVLVDPKPTAKVV
LLKDAPVLNRQRRNEPKKPDSVEAHEQLHHSQPAVPIHDQKPSPAGPQDH
KRKREAHHEEGHHGDDAVPQKEEVKQAPEDHDAKKEKREAHHEEGHQDHE
APHKEEVKQAPEAHDAKREKREAHHEEGHHGDDAAPHKEEVKQAPETHED
KKEKREAHHEEGHKDEAGDRPQVEDLSLPHALPAVAHTAELPKKQEKRET
VEKPDSVKARESLQHNPQRSQELHKAIESLAGGKAPEQRHQRDIPVPTQT
KATTTTDLPSTTKSELESTTPSIHNLHIPHPIPVAELFEKNKHADKSTSS
SEESKEKAKA*

GH07049.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23817-PA 490 GF23817-PA 1..90 1..92 276 64.1 Plus
Dana\GF23817-PA 490 GF23817-PA 343..475 199..340 219 43.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13957-PA 293 GG13957-PA 1..293 1..360 1090 71.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17045-PA 420 GH17045-PA 1..394 1..346 270 36.1 Plus
Dgri\GH23227-PA 474 GH23227-PA 1..445 1..346 243 34.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6409-PB 360 CG6409-PB 1..360 1..360 1907 100 Plus
CG6409-PA 360 CG6409-PA 1..360 1..360 1907 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21810-PA 376 GL21810-PA 1..355 1..342 434 41 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19570-PA 466 GA19570-PA 1..112 1..106 253 53.8 Plus
Dpse\GA19570-PA 466 GA19570-PA 303..445 227..342 216 40.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24797-PA 360 GM24797-PA 1..360 1..360 1585 93.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13320-PA 416 GJ13320-PA 3..413 5..342 200 30.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13746-PA 390 GK13746-PA 71..367 97..338 184 32.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20257-PA 327 GE20257-PA 1..327 1..360 1203 76 Plus