Clone GH07062 Report

Search the DGRC for GH07062

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:70
Well:62
Vector:pOT2
Associated Gene/TranscriptCG5555-RA
Protein status:GH07062.pep: gold
Preliminary Size:2200
Sequenced Size:1976

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5555 2001-01-01 Release 2 assignment
CG5555 2001-07-04 Blastp of sequenced clone
CG5555 2003-01-01 Sim4 clustering to Release 3
CG5555 2008-04-29 Release 5.5 accounting
CG5555 2008-08-15 Release 5.9 accounting
CG5555 2008-12-18 5.12 accounting

Clone Sequence Records

GH07062.complete Sequence

1976 bp (1976 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047557

> GH07062.complete
TTCACATAGAAAAATAACAAACTCATTTCGCACAGAGTAAAATAGAAAAT
TACACTTTGAACGGTCTTTAGGCTTTTTTTTATATATAAAAACTAATGAA
AATTATGCCCGTGTCATGCTAGAAAACATTTCCCTGTGTGTGATCAAGAT
CGAAACGGATTTGGATCCCAGTGCAGATTCTGAGGGAGCTGTGTCCGCCG
AACATCCAACCAATCCCCGAGTGCTCAAGGAGCGGGAACGCGACCGCGGA
CTTCGCCAATCCCGCGACATCACCATCGAAACGTACACAAACCAGCGTTG
GAAGCGGGAATTGAGTGAACCCAGACAGCAGGAGATGAACTGGGTAGCCG
CCGTGCAGCATGTGAACAGCCCCTCGGCGGGCAGCTCCCGGGAGATAACT
CCTCGGAGCGGCGATGATGGCCAGGCGGGAGCCAGCGCCTCCAACTTTCC
CCAAGAGATAGGGTACTTCTCCGGCAATCCCATCGTCGAGGTGACCAAAG
GTCTTATCCATCTCTACAAGAAAAACGAACGCAAGGCCATCAAGGAAGCT
CCATCTAACCAACTCTGCCTGCTGGCCGTGCCGGCCACTCTTAACTGCCA
CGATCTGCTGAACTTTATTGCCCCCTGTCATGCAGAGATTAAACACATCC
AGATTGTACGTGACGGCAGCCCCAATCAGTTCATGGTGCTTTTGGAATTC
CGCTCGAATGAATCCGCTTTGGAGTTCTACAAGTCCTATAATGGCAGTAC
TTACAACTCACTGGAACCGGACTCGCTGTGCCACGCGGTCTGGGTATCAG
AGGTGGAAAGGAGCGAGCATGGAGCACCACCAATGGGACACACCGAGCTA
CCCACCTGTCCAGTGTGCCTGGAGCGCATGGACGAGAGCGTGGATGGAGT
GTTGACCATATTGTGCAATCACGCCTTCCACGCCAGCTGCCTGATGAAAT
GGGGTGACTCCACCTGTCCGGTGTGCCGCCATGTTCAAACTCCTGGACTG
GTCGAAGATTCCGTGTGCATGGAATGCGAGGGCACCGATTCCTTATGGAT
CTGCCTGATCTGCGGACATGTGGGCTGCGGACGCTACCAGGGAGGACATG
CTGCTGCACACTTCCGGGCCACAAATCACACCTTTGCCATGCAGTTGGGC
ACCTCAAGCGTATGGGACTATGCCGGTGACAACTTTGTGCATCGCTTATT
TCAAAACAAATCCGACGGCAAGCTGGTGGCATCGCAAACCGAGAAAGATG
AGCGCGAGGAAAAGATTGACTCCATGCAGATGGAGTTCACATACCTGTTG
ACCTCTCAGCTGGACACACAGCGCAAGTACTATGAGGAGCGCATGGAACG
ATTGGAGCAGGAGTGGCAGAACCACAAGGCGACTGCCAACGACGCCAAGA
CAGAGGTTTCCGAGCTTCAACAGCTTCAGCAGAACATGCAGAAAGAAAAG
GTCAATTTGGAGCGCAAGTTGGCCCAGCATACAGCTAAGCTAAAGGATGT
ACAGAAGCAGCTGAACGAAGAGCGTGAGTTGTCCAAGGCACTGCAGAGCA
ACCAGAGCTCCTGGCACGGCAAATACAAACTCTTGGAACAGCAGTACAAC
GAGTTCAAGCAAACCCACGACGCCGAGGTGACCGAATTAAAGGAACAGCT
TCGCGACATTATGTTCTTTTTGGACAATCAGCAAAAGTTGGCCAACACCG
AGATAGCGGGTGGCACCGTTACAGGCATTGCAGAGAAGGAACCGGATCCC
AACACCCGGCGCCGTAATCGTCGCAAGAAATAAATCATAGCCACCGTACG
CCGTCTTTATATCCAAGCTGCATTGTTTACCCGATCTTAGATGGCTATGC
AAACCGAGTATATAAGGTTTATAACAGCTCTATATGTGATTTCCTTTGTA
TAACGAAAACCTAAGGATTAAATATAACTACTACTACGTAGAAAACCATA
TGTCCCAAAAAAAAAAAAAAAAAAAA

GH07062.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5555-RA 2024 CG5555-RA 21..1980 1..1960 9800 100 Plus
CG5555.a 1973 CG5555.a 133..1972 121..1960 9200 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15002554..15003346 1489..697 3965 100 Minus
chr3R 27901430 chr3R 15002021..15002488 1956..1489 2340 100 Minus
chr3R 27901430 chr3R 15003647..15003998 525..174 1760 100 Minus
chr3R 27901430 chr3R 15004063..15004238 176..1 880 100 Minus
chr3R 27901430 chr3R 15003414..15003584 696..526 855 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:35:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19178618..19179410 1489..697 3965 100 Minus
3R 32079331 3R 19178081..19178552 1960..1489 2360 100 Minus
3R 32079331 3R 19179711..19180062 525..174 1760 100 Minus
3R 32079331 3R 19180127..19180302 176..1 880 100 Minus
3R 32079331 3R 19179478..19179648 696..526 855 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 18919449..18920241 1489..697 3965 100 Minus
3R 31820162 3R 18918912..18919383 1960..1489 2360 100 Minus
3R 31820162 3R 18920542..18920893 525..174 1760 100 Minus
3R 31820162 3R 18920958..18921133 176..1 880 100 Minus
3R 31820162 3R 18920309..18920479 696..526 855 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:26:51 has no hits.

GH07062.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:27:58 Download gff for GH07062.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15002021..15002488 1489..1956 100 <- Minus
chr3R 15002555..15003346 697..1488 100 <- Minus
chr3R 15003414..15003584 526..696 100 <- Minus
chr3R 15003647..15003995 177..525 100 <- Minus
chr3R 15004063..15004238 1..176 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:21:57 Download gff for GH07062.complete
Subject Subject Range Query Range Percent Splice Strand
CG5555-RA 1..1668 116..1783 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:29:12 Download gff for GH07062.complete
Subject Subject Range Query Range Percent Splice Strand
CG5555-RA 1..1668 116..1783 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:36:13 Download gff for GH07062.complete
Subject Subject Range Query Range Percent Splice Strand
CG5555-RA 1..1668 116..1783 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:02:36 Download gff for GH07062.complete
Subject Subject Range Query Range Percent Splice Strand
CG5555-RA 1..1668 116..1783 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:03:07 Download gff for GH07062.complete
Subject Subject Range Query Range Percent Splice Strand
CG5555-RA 1..1668 116..1783 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:29:33 Download gff for GH07062.complete
Subject Subject Range Query Range Percent Splice Strand
CG5555-RA 21..1976 1..1956 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:29:12 Download gff for GH07062.complete
Subject Subject Range Query Range Percent Splice Strand
CG5555-RA 21..1976 1..1956 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:13 Download gff for GH07062.complete
Subject Subject Range Query Range Percent Splice Strand
CG5555-RA 21..1976 1..1956 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:02:37 Download gff for GH07062.complete
Subject Subject Range Query Range Percent Splice Strand
CG5555-RA 21..1976 1..1956 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:03:07 Download gff for GH07062.complete
Subject Subject Range Query Range Percent Splice Strand
CG5555-RA 21..1976 1..1956 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:27:58 Download gff for GH07062.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19178085..19178552 1489..1956 100 <- Minus
3R 19178619..19179410 697..1488 100 <- Minus
3R 19179478..19179648 526..696 100 <- Minus
3R 19179711..19180059 177..525 100 <- Minus
3R 19180127..19180302 1..176 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:27:58 Download gff for GH07062.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19178085..19178552 1489..1956 100 <- Minus
3R 19178619..19179410 697..1488 100 <- Minus
3R 19179478..19179648 526..696 100 <- Minus
3R 19179711..19180059 177..525 100 <- Minus
3R 19180127..19180302 1..176 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:27:58 Download gff for GH07062.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19178085..19178552 1489..1956 100 <- Minus
3R 19178619..19179410 697..1488 100 <- Minus
3R 19179478..19179648 526..696 100 <- Minus
3R 19179711..19180059 177..525 100 <- Minus
3R 19180127..19180302 1..176 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:13 Download gff for GH07062.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15005849..15006024 1..176 100   Minus
arm_3R 15003807..15004274 1489..1956 100 <- Minus
arm_3R 15004341..15005132 697..1488 100 <- Minus
arm_3R 15005200..15005370 526..696 100 <- Minus
arm_3R 15005433..15005781 177..525 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:40:36 Download gff for GH07062.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18920958..18921133 1..176 100   Minus
3R 18918916..18919383 1489..1956 100 <- Minus
3R 18919450..18920241 697..1488 100 <- Minus
3R 18920309..18920479 526..696 100 <- Minus
3R 18920542..18920890 177..525 100 <- Minus

GH07062.pep Sequence

Translation from 115 to 1782

> GH07062.pep
MLENISLCVIKIETDLDPSADSEGAVSAEHPTNPRVLKERERDRGLRQSR
DITIETYTNQRWKRELSEPRQQEMNWVAAVQHVNSPSAGSSREITPRSGD
DGQAGASASNFPQEIGYFSGNPIVEVTKGLIHLYKKNERKAIKEAPSNQL
CLLAVPATLNCHDLLNFIAPCHAEIKHIQIVRDGSPNQFMVLLEFRSNES
ALEFYKSYNGSTYNSLEPDSLCHAVWVSEVERSEHGAPPMGHTELPTCPV
CLERMDESVDGVLTILCNHAFHASCLMKWGDSTCPVCRHVQTPGLVEDSV
CMECEGTDSLWICLICGHVGCGRYQGGHAAAHFRATNHTFAMQLGTSSVW
DYAGDNFVHRLFQNKSDGKLVASQTEKDEREEKIDSMQMEFTYLLTSQLD
TQRKYYEERMERLEQEWQNHKATANDAKTEVSELQQLQQNMQKEKVNLER
KLAQHTAKLKDVQKQLNEERELSKALQSNQSSWHGKYKLLEQQYNEFKQT
HDAEVTELKEQLRDIMFFLDNQQKLANTEIAGGTVTGIAEKEPDPNTRRR
NRRKK*

GH07062.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18474-PA 561 GF18474-PA 1..561 1..555 2654 86.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16130-PA 555 GG16130-PA 1..555 1..555 2919 95.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14868-PA 560 GH14868-PA 1..560 1..555 2571 83.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5555-PA 555 CG5555-PA 1..555 1..555 2943 100 Plus
CG5555-PB 558 CG5555-PB 6..558 3..555 2934 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23691-PA 556 GI23691-PA 1..556 1..555 2516 82.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11979-PA 563 GL11979-PA 1..563 1..555 2546 84.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18966-PA 563 GA18966-PA 1..563 1..555 2546 84.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26923-PA 555 GM26923-PA 1..555 1..555 2940 96.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20128-PA 542 GD20128-PA 1..542 1..555 2680 88.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23250-PA 561 GJ23250-PA 1..561 1..555 2610 84.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13486-PA 554 GK13486-PA 1..552 1..555 2567 84.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25146-PA 555 GE25146-PA 1..555 1..555 2913 95.5 Plus

GH07062.hyp Sequence

Translation from 115 to 1782

> GH07062.hyp
MLENISLCVIKIETDLDPSADSEGAVSAEHPTNPRVLKERERDRGLRQSR
DITIETYTNQRWKRELSEPRQQEMNWVAAVQHVNSPSAGSSREITPRSGD
DGQAGASASNFPQEIGYFSGNPIVEVTKGLIHLYKKNERKAIKEAPSNQL
CLLAVPATLNCHDLLNFIAPCHAEIKHIQIVRDGSPNQFMVLLEFRSNES
ALEFYKSYNGSTYNSLEPDSLCHAVWVSEVERSEHGAPPMGHTELPTCPV
CLERMDESVDGVLTILCNHAFHASCLMKWGDSTCPVCRHVQTPGLVEDSV
CMECEGTDSLWICLICGHVGCGRYQGGHAAAHFRATNHTFAMQLGTSSVW
DYAGDNFVHRLFQNKSDGKLVASQTEKDEREEKIDSMQMEFTYLLTSQLD
TQRKYYEERMERLEQEWQNHKATANDAKTEVSELQQLQQNMQKEKVNLER
KLAQHTAKLKDVQKQLNEERELSKALQSNQSSWHGKYKLLEQQYNEFKQT
HDAEVTELKEQLRDIMFFLDNQQKLANTEIAGGTVTGIAEKEPDPNTRRR
NRRKK*

GH07062.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5555-PA 555 CG5555-PA 1..555 1..555 2943 100 Plus
CG5555-PB 558 CG5555-PB 6..558 3..555 2934 100 Plus