Clone GH07080 Report

Search the DGRC for GH07080

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:70
Well:80
Vector:pOT2
Associated Gene/TranscriptCG1340-RA
Protein status:GH07080.pep: gold
Preliminary Size:1602
Sequenced Size:1876

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1340 2002-12-10 Blastp of sequenced clone
CG1340 2003-01-01 Sim4 clustering to Release 3
CG1340 2008-04-29 Release 5.5 accounting
CG1340 2008-08-15 Release 5.9 accounting
CG1340 2008-12-18 5.12 accounting

Clone Sequence Records

GH07080.complete Sequence

1876 bp (1876 high quality bases) assembled on 2002-12-10

GenBank Submission: BT003308

> GH07080.complete
TGGGATTGAAATTAGTGTCTCCGGGCTGTTAGAAATCATTTGGAAACCTT
TAGCTCCGACTCCAGTCCCTTGTCTCGCGTAGACTTATCAACAGCGTCTG
GAATATCAAGCTCCGGACTTTTCTTTAAGCGCTTGGTGCTCCGTGTGTCC
GTGGTTAGAGGTTTTGCTTGGCTACGGCTAGGTGTATATATTTTAGTAGG
ATTGGGACTAGGACCTAAGAGCATGGCCAATCGCTCCAGCCAGCGGGACC
GAGAGTTCAATCGTGATAATACTTACAATAACAATCGCGACAATCGAGAC
CATAATCGGGACAATCGCGATAATCGGGAGAATCGCAGTAATTTCCAAAA
CTATCGCAATCGTGACAGGGATCGCGATAGGCAGCGTCAGGTGCCCACGG
AACCTCCGTTCATCGCTTATGTGGGCAACCTTCCCAAGGGTCTCGTCCAG
GGCGATGTGATGAAGATATTTTCGGACTTCGAGGTGAAGAATGTGCGCCT
GATCAAGGACCGTGAGACGGATGAATTCAAAGGCTATGGCTACGTAGAGT
TCGAGACTCTGGCACAACTGAAGAGTGCTCTCAACTGCAACGGACGCATC
AAGCTAGACAACTTTTCGGCCCCCCTGCGTATCGATATAGCCGACCATCG
CCGGCAGAACCCGGGTGCTCCCAGCGGTGTTGGCGGAGCTCCTCCAGCCG
GAGTGGGCCACGAAAGAGGTGGTGGCGTCGGAAGAGGAGGCAGCACGGGT
GCAGCAAACGGTAACAATCCCTACTACCAGAGGCGCAACTATCGGCGGGA
CGACAGTGTGGGATCCCATCAGTTTAGAAGGAGGGAACCGCGCAGCAACA
GCAGCAACCACCAAATGTCCAATAGCAGCCCCACACAAAGCACCACGTCC
ATTAATTACAACCGCACCACTCGAGGTGGTTTCAATAGCCGTGTTGCTGT
AGGTGGAAATGGCAATCGTTACCAAGGAGGAGCTCCACGTAACTTCAATG
ACCGCGAGGATCAGCAATCGACCGGCAGCGGAGGATTCCAACGCAATCGC
ACCTACAACTTTAACCGATCCATGAACAACAGCGTCGGCGGAGGAGGTGC
TGGAGTAGGTAGGGGCGGGCATCCGCAGCGGAACTTCAATGGAAATGGAG
GCGGCGGTGGATTCGGGGTCGTAAATGGAGGCGGCAACTATACCAATTTT
GTGCAGAATCGCAATCGCGATCGCCGTGGACACTACAATCCAAATCACTC
TGGAAGTTCTGGCGGCTACAATAACAATGGGAACAACACCTTTGGCGGGG
AGAACAATCATCCTGTGCACGGAGCATCCGAGTCGGCATCATCTGGAACA
GGTCCTAGTTCGAGCAATCAATTCGCCGTACGCGACGATGATGATCGGCC
CAAGCTAGTGCTCAAGCCCAGGACTGTGACTGCACCCATCAACTCTCTGG
CTGAAACCAAACAGGCTGCTCTCATCTTCGGAAAGGCCAAGCCCCGTGAT
GATAGCTCCACGCCCGTCTCCTCGCCACGCCAGGATTTGGACGCAGGATC
GTCAGGTGCTCCAAGTGATCATGATCATGATCCAGGCTTGGGCGACAACT
AGATCGGATCATACGATGTTGATGGCAGTCTAGACCGGTGGGGTTCAGCA
TGGCGAGATCTTTCAATAAACTTTTCATAGGCCTCTTATATTATTATTAG
ATTTGTATCCACTGATGTTCGTGCACTTCGTCCTCGAAATCAAGACTGCA
ATCTCTTTACTATTTAAACGTATTCAAAATTCACATTGTGCAATCCATTG
GCTTGTTTTTTCGCTTGTGTTAAATTCAGTGATAAGGCAAGGAAATAAAT
AAAAAAAAAAAAAAAAAAAAAAAAAA

GH07080.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1340-RA 1930 CG1340-RA 29..1885 1..1857 9270 99.9 Plus
Rbp2-RB 1984 Rbp2-RB 82..256 388..562 350 80 Plus
Rbp2-RA 2248 Rbp2-RA 346..520 388..562 350 80 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26548599..26549665 1..1067 5320 99.9 Plus
chr3R 27901430 chr3R 26549725..26550508 1067..1850 3830 99.2 Plus
chrX 22417052 chrX 16339629..16339803 388..562 350 80 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:35:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30726088..30727154 1..1067 5335 100 Plus
3R 32079331 3R 30727214..30728004 1067..1857 3940 99.9 Plus
X 23542271 X 16449905..16450079 388..562 350 80 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30466919..30467985 1..1067 5335 100 Plus
3R 31820162 3R 30468045..30468835 1067..1857 3940 99.8 Plus
X 23527363 X 16458003..16458177 388..562 350 80 Plus
Blast to na_te.dros performed 2019-03-16 00:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6795..6882 836..919 123 64.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3290..3370 834..911 118 65.9 Plus
roo 9092 roo DM_ROO 9092bp 1092..1155 826..890 114 69.7 Plus

GH07080.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:22:48 Download gff for GH07080.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26548599..26549665 1..1067 99 -> Plus
chr3R 26549726..26550508 1068..1850 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:22:05 Download gff for GH07080.complete
Subject Subject Range Query Range Percent Splice Strand
CG1340-RA 1..1380 223..1602 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:02:26 Download gff for GH07080.complete
Subject Subject Range Query Range Percent Splice Strand
CG1340-RA 1..1380 223..1602 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:49:43 Download gff for GH07080.complete
Subject Subject Range Query Range Percent Splice Strand
CG1340-RA 1..1380 223..1602 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:52:47 Download gff for GH07080.complete
Subject Subject Range Query Range Percent Splice Strand
CG1340-RA 1..1380 223..1602 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 03:58:26 Download gff for GH07080.complete
Subject Subject Range Query Range Percent Splice Strand
CG1340-RA 1..1380 223..1602 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:20:35 Download gff for GH07080.complete
Subject Subject Range Query Range Percent Splice Strand
CG1340-RA 2..1851 1..1850 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:02:26 Download gff for GH07080.complete
Subject Subject Range Query Range Percent Splice Strand
CG1340-RA 2..1851 1..1850 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:49:43 Download gff for GH07080.complete
Subject Subject Range Query Range Percent Splice Strand
CG1340-RA 2..1851 1..1850 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:52:48 Download gff for GH07080.complete
Subject Subject Range Query Range Percent Splice Strand
CG1340-RA 2..1851 1..1850 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 03:58:26 Download gff for GH07080.complete
Subject Subject Range Query Range Percent Splice Strand
CG1340-RA 2..1851 1..1850 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:22:48 Download gff for GH07080.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30726088..30727154 1..1067 100 -> Plus
3R 30727215..30727997 1068..1850 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:22:48 Download gff for GH07080.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30726088..30727154 1..1067 100 -> Plus
3R 30727215..30727997 1068..1850 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:22:48 Download gff for GH07080.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30726088..30727154 1..1067 100 -> Plus
3R 30727215..30727997 1068..1850 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:49:43 Download gff for GH07080.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26551810..26552876 1..1067 100 -> Plus
arm_3R 26552937..26553719 1068..1850 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:24:51 Download gff for GH07080.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30468046..30468828 1068..1850 100   Plus
3R 30466919..30467985 1..1067 100 -> Plus

GH07080.pep Sequence

Translation from 222 to 1601

> GH07080.pep
MANRSSQRDREFNRDNTYNNNRDNRDHNRDNRDNRENRSNFQNYRNRDRD
RDRQRQVPTEPPFIAYVGNLPKGLVQGDVMKIFSDFEVKNVRLIKDRETD
EFKGYGYVEFETLAQLKSALNCNGRIKLDNFSAPLRIDIADHRRQNPGAP
SGVGGAPPAGVGHERGGGVGRGGSTGAANGNNPYYQRRNYRRDDSVGSHQ
FRRREPRSNSSNHQMSNSSPTQSTTSINYNRTTRGGFNSRVAVGGNGNRY
QGGAPRNFNDREDQQSTGSGGFQRNRTYNFNRSMNNSVGGGGAGVGRGGH
PQRNFNGNGGGGGFGVVNGGGNYTNFVQNRNRDRRGHYNPNHSGSSGGYN
NNGNNTFGGENNHPVHGASESASSGTGPSSSNQFAVRDDDDRPKLVLKPR
TVTAPINSLAETKQAALIFGKAKPRDDSSTPVSSPRQDLDAGSSGAPSDH
DHDPGLGDN*

GH07080.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22920-PA 526 GF22920-PA 77..482 57..442 883 64.7 Plus
Dana\GF19517-PA 369 GF19517-PA 258..361 320..434 156 36.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11771-PA 495 GG11771-PA 1..488 1..459 1395 77.5 Plus
Dere\GG17966-PA 358 GG17966-PA 21..110 55..144 399 76.7 Plus
Dere\GG11780-PA 88 GG11780-PA 1..81 215..285 270 75.3 Plus
Dere\GG11772-PA 80 GG11772-PA 1..80 215..282 229 68.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22433-PA 113 GH22433-PA 21..110 55..144 364 78.9 Plus
Dgri\GH14211-PA 410 GH14211-PA 307..392 316..432 209 42.7 Plus
Dgri\GH24789-PA 145 GH24789-PA 50..140 320..440 175 38 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4H2-PC 459 CG1340-PC 1..459 1..459 2477 100 Plus
eIF4H2-PA 459 CG1340-PA 1..459 1..459 2477 100 Plus
eIF4H1-PC 358 CG4429-PC 4..343 38..427 619 41.4 Plus
eIF4H1-PD 388 CG4429-PD 4..373 38..427 609 40.7 Plus
eIF4H1-PA 325 CG4429-PA 4..310 38..427 582 39.4 Plus
eIF4H1-PE 317 CG4429-PE 13..302 55..427 580 40.7 Plus
eIF4H1-PB 324 CG4429-PB 20..309 55..427 580 40.7 Plus
glo-PA 586 CG6946-PA 146..460 63..379 205 26.3 Plus
glo-PB 586 CG6946-PB 146..460 63..379 205 26.3 Plus
caz-PD 355 CG3606-PD 115..337 93..322 197 30.1 Plus
caz-PC 384 CG3606-PC 144..366 93..322 197 30.1 Plus
caz-PB 399 CG3606-PB 159..381 93..322 197 30.1 Plus
Hrb87F-PE 385 CG12749-PE 79..382 36..322 182 28.6 Plus
Hrb87F-PD 385 CG12749-PD 79..382 36..322 182 28.6 Plus
Hrb87F-PC 385 CG12749-PC 79..382 36..322 182 28.6 Plus
Hrb87F-PA 385 CG12749-PA 79..382 36..322 182 28.6 Plus
CG30122-PD 1271 CG30122-PD 904..1086 187..384 177 32.7 Plus
CG30122-PB 1271 CG30122-PB 904..1086 187..384 177 32.7 Plus
CG30122-PC 1272 CG30122-PC 904..1086 187..384 177 32.7 Plus
CG7903-PB 382 CG7903-PB 150..367 144..384 170 26.1 Plus
CG7903-PA 384 CG7903-PA 152..369 144..384 170 26.1 Plus
Hrb98DE-PE 360 CG9983-PE 120..357 66..355 167 26.8 Plus
Hrb98DE-PF 361 CG9983-PF 121..358 66..355 167 26.8 Plus
Hrb98DE-PD 361 CG9983-PD 121..358 66..355 167 26.8 Plus
Hrb98DE-PA 364 CG9983-PA 124..361 66..355 167 26.8 Plus
Hrb98DE-PC 365 CG9983-PC 125..362 66..355 167 26.8 Plus
Hrb98DE-PB 365 CG9983-PB 125..362 66..355 167 26.8 Plus
CG5787-PB 950 CG5787-PB 198..445 146..381 167 29.3 Plus
CG5787-PA 950 CG5787-PA 198..445 146..381 167 29.3 Plus
NAT1-PD 1488 CG3845-PD 131..390 121..393 159 26.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21487-PA 206 GI21487-PA 21..110 55..144 411 80 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13513-PA 471 GL13513-PA 99..469 54..448 780 52.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12257-PB 471 GA12257-PB 99..469 54..448 786 54.1 Plus
Dpse\GA18178-PB 335 GA18178-PB 217..326 320..433 159 37.7 Plus
Dpse\GA18178-PA 368 GA18178-PA 250..359 320..433 158 37.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12901-PA 502 GM12901-PA 36..502 7..459 1647 87 Plus
Dsec\GM13442-PA 358 GM13442-PA 21..110 55..144 399 76.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:20:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21542-PA 472 GD21542-PA 1..472 1..459 1670 86.4 Plus
Dsim\GD17286-PA 256 GD17286-PA 202..241 388..427 158 67.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24240-PA 454 GJ24240-PA 11..166 20..202 443 57.9 Plus
Dvir\GJ19028-PA 332 GJ19028-PA 21..110 55..144 415 80 Plus
Dvir\GJ24240-PA 454 GJ24240-PA 338..454 316..456 258 46.9 Plus
Dvir\GJ19028-PA 332 GJ19028-PA 243..322 320..432 162 37.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14152-PA 461 GK14152-PA 1..230 1..227 661 61.4 Plus
Dwil\GK25675-PA 354 GK25675-PA 21..110 55..144 398 75.6 Plus
Dwil\GK25675-PA 354 GK25675-PA 253..344 320..433 154 36.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10899-PA 502 GE10899-PA 1..502 1..459 1295 72.5 Plus
Dyak\GE17274-PA 358 GE17274-PA 21..110 55..144 399 76.7 Plus

GH07080.hyp Sequence

Translation from 222 to 1601

> GH07080.hyp
MANRSSQRDREFNRDNTYNNNRDNRDHNRDNRDNRENRSNFQNYRNRDRD
RDRQRQVPTEPPFIAYVGNLPKGLVQGDVMKIFSDFEVKNVRLIKDRETD
EFKGYGYVEFETLAQLKSALNCNGRIKLDNFSAPLRIDIADHRRQNPGAP
SGVGGAPPAGVGHERGGGVGRGGSTGAANGNNPYYQRRNYRRDDSVGSHQ
FRRREPRSNSSNHQMSNSSPTQSTTSINYNRTTRGGFNSRVAVGGNGNRY
QGGAPRNFNDREDQQSTGSGGFQRNRTYNFNRSMNNSVGGGGAGVGRGGH
PQRNFNGNGGGGGFGVVNGGGNYTNFVQNRNRDRRGHYNPNHSGSSGGYN
NNGNNTFGGENNHPVHGASESASSGTGPSSSNQFAVRDDDDRPKLVLKPR
TVTAPINSLAETKQAALIFGKAKPRDDSSTPVSSPRQDLDAGSSGAPSDH
DHDPGLGDN*

GH07080.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1340-PC 459 CG1340-PC 1..459 1..459 2477 100 Plus
CG1340-PA 459 CG1340-PA 1..459 1..459 2477 100 Plus
Rbp2-PC 358 CG4429-PC 4..343 38..427 619 41.4 Plus
Rbp2-PD 388 CG4429-PD 4..373 38..427 609 40.7 Plus
Rbp2-PA 325 CG4429-PA 4..310 38..427 582 39.4 Plus