Clone GH07208 Report

Search the DGRC for GH07208

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:72
Well:8
Vector:pOT2
Associated Gene/TranscriptPgk-RA
Protein status:GH07208.pep: gold
Sequenced Size:2515

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3127 2003-01-01 Sim4 clustering to Release 3
Pgk 2008-04-29 Release 5.5 accounting
Pgk 2008-08-15 Release 5.9 accounting
sta 2008-08-15 Release 5.9 accounting
Pgk 2008-12-18 5.12 accounting
sta 2008-12-18 5.12 accounting

Clone Sequence Records

GH07208.complete Sequence

2515 bp assembled on 2006-11-09

GenBank Submission: BT023910

> GH07208.complete
CTGACATTGCCGCACAGCAGTTGAGGACGAAGAAGATTCGCGGAATCAGT
GGTATCGCAATCCGGAGTTTGCTAGCACGCACAGGAAGTATCCAGAAAAT
CCAGAAAAATCCAAAGATGGCCTTCAATAAGCTGAGCATCGAAAACCTGG
ACTTGGCGGGCAAGCGGGTGTTGATGCGCGTCGACTTCAATGTGCCCATC
AAGGAGGGCAAGATCACCAGCAACCAGAGAATTGTCGCTGCCTTGGATAG
TATCAAGTTGGCCCTTTCCAAGAAAGCCAAGTCGGTGGTGCTGATGTCCC
ACTTGGGTCGTCCCGATGGCAACAAGAACATCAAGTACACCCTGGCACCC
GTGGCCGCTGAGCTGAAGACCCTGCTTGGCCAGGATGTGATCTTCCTAAG
TGACTGCGTCGGCAGCGAAGTGGAGGCCGCTTGCAAGGATCCCGCACCGG
GATCCGTCATTCTGCTGGAGAACGTCCGCTTCTACGTGGAGGAGGAGGGC
AAGGGCTTGGATGCCAGCGGCGGCAAGGTCAAGGCCGATCCTGCCAAGGT
CAAGGAGTTCCGTGCCAGCCTGGCCAAGCTGGGCGATGTCTATGTCAACG
ACGCCTTCGGCACTGCCCATCGCGCCCACAGTTCCATGATGGGCGATGGC
TTCGAGCAGCGCGCAGCTGGTCTGTTGCTGAACAAGGAGCTGAAGTACTT
CTCGCAGGCCCTGGACAAGCCACCAAATCCCTTCCTGGCAATTCTCGGTG
GCGCCAAGGTGGCCGACAAGATCCAGCTGATTGAGAACCTTCTGGACAAG
GTCAACGAGATGATCATCGGTGGCGGCATGGCCTTCACCTTCCTGAAGGT
CCTCAACAACATGAAGATCGGCGGTTCCCTGTTCGACGAGGAGGGCTCCA
AGATCGTCGAGAAACTGGTGGAGAAGGCCAAGAAGAATAACGTGCAGTTG
CATCTGCCAGTGGACTTTGTCTGCGGCGACAAGTTCGCCGAGAACGCTGC
CGTCAGCGAGGCCACCGTGGAGGCCGGAATTCCCGATGGACACATGGGTC
TGGATGTGGGTCCCAAGACCCGTGAGCTCTTCGCGGCACCCATCGCACGC
GCCAAGCTCATCGTGTGGAACGGACCCCCCGGTGTCTTTGAGTTCCCCAA
CTTCGCCAACGGCACCAAGTCCATCATGGACGGCGTGGTGGCCGCCACCA
AGAACGGCACCGTCTCCATCATCGGCGGCGGCGACACTGCCTCTTGCTGC
GCCAAGTGGAACACGGAGGCACTCGTCTCGCACGTCTCCACCGGAGGCGG
CGCTTCGCTGGAGCTCCTGGAGGGCAAGACACTGCCAGGCGTGGCTGCAT
TGACCAGCGCCTAAGCGTACATATATACGGTATATTAATGTTAATCGCAT
CGTTTACCTTGTAAGCACAAACCACGACGTTAAAAAGTGTTGAATCTATT
TGTTGCGGAACCATATAATGCATACGAAATAAAGGAATCCTAGTTTAAAA
AAAAAAAAAAAAAACTCGAGACTAGTTCTCTCCTCGTGCCGAATTCGGCA
CGAGGGCATCTAGACGTCCGTAACTCTTTCCACGTTAACATGTCGGGAGG
CTTAGATATTCTGTCCCTCAAGGAGGACGACATCACCAAGATGTTGGTGG
CCACCACCCATCTGGGTTCCGAGAACGTCAACTTCCAGATGGAGCAGTAC
GTGTACAAGCGCCGCGCTGATGGCGTCAACATCCTCAACCTGGGCAAGAC
CTGGGAGAAGCTGCAGCTGGCGGCCCGCGCCATCGTGGCCATCGATAACC
CCTCGGACATCTTCGTCATCTCGTCGCGTCCGATCGGCCAGCGCGCGGTG
CTGAAGTTCGCCAAGTACACCGACACCACTCCGATCGCCGGCCGCTTCAC
GCCCGGTGCCTTCACCAACCAGATCCAGCCCGCTTTCCGCGAGCCGCGTC
TGCTGGTGGTGACCGACCCCAACACCGATCACCAGCCCATCATGGAGGCC
AGCTACGTGAACATCCCCGTGATTGCCTTCACGAACACCGACTCGCCTCT
GCGCTACATCGACATTGCCATTCCGTGCAACAACAAGTCGGCCCACTCTA
TCGGTCTGATGTGGTGGCTGTTGGCCCGCGAAGTGCTCCGCCTGCGTGGC
ACCATCTCTCGCAGCGTCGAGTGGCCCGTAGTCGTCGATCTGTTCTTCTA
CCGCGATCCCGAGGAGGCCGAGAAGGAGGAGGCCGCCGCCAAGGAGCTGT
TGCCGCCACCCAAGATTGAGGAGGCCGTCGACCACCCGGTCGAGGAGACC
ACCAACTGGGCCGATGAGGTTGCCGCCGAGACCGTTGGCGGAGTGGAGGA
CTGGAACGAGGACACCGTCAAGACCTCCTGGGGTAGCGACGGCCAGTTCT
AAGGAATCGTCCGGGCCACAGATGGCACTACATCAGCACAGCGTTTTGTC
AGGAGCCTTTTCAACGGCATAAATAAACAGCTGTTTATATCTAAAAAAAA
AAAAAAAAAAAAAAA

GH07208.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
Pgk-RA 1841 Pgk-RA 313..1809 1..1497 7485 100 Plus
sta.c 1972 sta.c 893..1833 1555..2495 4705 100 Plus
sta-RB 1381 sta-RB 302..1242 1555..2495 4705 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2747039..2747984 1123..178 4730 100 Minus
chrX 22417052 chrX 1375691..1376374 2492..1809 3405 99.9 Minus
chr2L 23010047 chr2L 2746607..2746981 1497..1123 1875 100 Minus
chrX 22417052 chrX 1376567..1376809 1808..1566 1200 99.6 Minus
chr2L 23010047 chr2L 2748048..2748225 178..1 890 100 Minus
chr2L 23010047 chr2L 2743655..2744029 899..525 480 75.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:35:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2747311..2748256 1123..178 4730 100 Minus
X 23542271 X 1481794..1482480 2495..1809 3435 100 Minus
2L 23513712 2L 2746879..2747253 1497..1123 1875 100 Minus
X 23542271 X 1482673..1482915 1808..1566 1215 100 Minus
2L 23513712 2L 2748320..2748497 178..1 890 100 Minus
2L 23513712 2L 2743926..2744300 899..525 480 75.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2747311..2748256 1123..178 4730 100 Minus
X 23527363 X 1489892..1490578 2495..1809 3435 100 Minus
2L 23513712 2L 2746879..2747253 1497..1123 1875 100 Minus
X 23527363 X 1490771..1491013 1808..1566 1215 100 Minus
2L 23513712 2L 2748320..2748497 178..1 890 100 Minus
2L 23513712 2L 2744125..2744300 700..525 340 79.5 Minus
2L 23513712 2L 2743926..2744096 899..729 210 74.8 Minus
2L 23513712 2L 2744442..2744528 383..297 180 80.4 Minus
Blast to na_te.dros performed on 2019-03-15 20:08:12 has no hits.

GH07208.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:08:59 Download gff for GH07208.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2746600..2746980 1124..1506 97 <- Minus
chr2L 2747039..2747983 179..1123 100 <- Minus
chr2L 2748048..2748225 1..178 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:41:49 Download gff for GH07208.complete
Subject Subject Range Query Range Percent Splice Strand
Pgk-RA 1..1248 117..1364 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:20:31 Download gff for GH07208.complete
Subject Subject Range Query Range Percent Splice Strand
Pgk-RA 1..1248 117..1364 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:48:39 Download gff for GH07208.complete
Subject Subject Range Query Range Percent Splice Strand
Pgk-RC 1..1248 117..1364 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:37:29 Download gff for GH07208.complete
Subject Subject Range Query Range Percent Splice Strand
Pgk-RA 1..1248 117..1364 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:29:22 Download gff for GH07208.complete
Subject Subject Range Query Range Percent Splice Strand
Pgk-RC 1..1248 117..1364 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:41:49 Download gff for GH07208.complete
Subject Subject Range Query Range Percent Splice Strand
Pgk-RA 26..1521 1..1496 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:20:31 Download gff for GH07208.complete
Subject Subject Range Query Range Percent Splice Strand
Pgk-RA 26..1521 1..1496 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:39 Download gff for GH07208.complete
Subject Subject Range Query Range Percent Splice Strand
Pgk-RC 372..1867 1..1496 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:37:29 Download gff for GH07208.complete
Subject Subject Range Query Range Percent Splice Strand
Pgk-RA 26..1521 1..1496 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:29:22 Download gff for GH07208.complete
Subject Subject Range Query Range Percent Splice Strand
Pgk-RC 372..1867 1..1496 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:08:59 Download gff for GH07208.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2746872..2747252 1124..1506 97 <- Minus
2L 2747311..2748255 179..1123 100 <- Minus
2L 2748320..2748497 1..178 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:08:59 Download gff for GH07208.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2746872..2747252 1124..1506 97 <- Minus
2L 2747311..2748255 179..1123 100 <- Minus
2L 2748320..2748497 1..178 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:08:59 Download gff for GH07208.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2746872..2747252 1124..1506 97 <- Minus
2L 2747311..2748255 179..1123 100 <- Minus
2L 2748320..2748497 1..178 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:39 Download gff for GH07208.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2746872..2747252 1124..1506 97 <- Minus
arm_2L 2747311..2748255 179..1123 100 <- Minus
arm_2L 2748320..2748497 1..178 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:49:31 Download gff for GH07208.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2746872..2747252 1124..1506 97 <- Minus
2L 2747311..2748255 179..1123 100 <- Minus
2L 2748320..2748497 1..178 100   Minus

GH07208.hyp Sequence

Translation from 2 to 1363

> GH07208.hyp
DIAAQQLRTKKIRGISGIAIRSLLARTGSIQKIQKNPKMAFNKLSIENLD
LAGKRVLMRVDFNVPIKEGKITSNQRIVAALDSIKLALSKKAKSVVLMSH
LGRPDGNKNIKYTLAPVAAELKTLLGQDVIFLSDCVGSEVEAACKDPAPG
SVILLENVRFYVEEEGKGLDASGGKVKADPAKVKEFRASLAKLGDVYVND
AFGTAHRAHSSMMGDGFEQRAAGLLLNKELKYFSQALDKPPNPFLAILGG
AKVADKIQLIENLLDKVNEMIIGGGMAFTFLKVLNNMKIGGSLFDEEGSK
IVEKLVEKAKKNNVQLHLPVDFVCGDKFAENAAVSEATVEAGIPDGHMGL
DVGPKTRELFAAPIARAKLIVWNGPPGVFEFPNFANGTKSIMDGVVAATK
NGTVSIIGGGDTASCCAKWNTEALVSHVSTGGGASLELLEGKTLPGVAAL
TSA*

GH07208.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
Pgk-PE 415 CG3127-PE 1..415 39..453 2099 100 Plus
Pgk-PD 415 CG3127-PD 1..415 39..453 2099 100 Plus
Pgk-PC 415 CG3127-PC 1..415 39..453 2099 100 Plus
Pgk-PB 415 CG3127-PB 1..415 39..453 2099 100 Plus
Pgk-PA 415 CG3127-PA 1..415 39..453 2099 100 Plus

GH07208.pep Sequence

Translation from 116 to 1363

> GH07208.pep
MAFNKLSIENLDLAGKRVLMRVDFNVPIKEGKITSNQRIVAALDSIKLAL
SKKAKSVVLMSHLGRPDGNKNIKYTLAPVAAELKTLLGQDVIFLSDCVGS
EVEAACKDPAPGSVILLENVRFYVEEEGKGLDASGGKVKADPAKVKEFRA
SLAKLGDVYVNDAFGTAHRAHSSMMGDGFEQRAAGLLLNKELKYFSQALD
KPPNPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMAFTFLKVLNNMK
IGGSLFDEEGSKIVEKLVEKAKKNNVQLHLPVDFVCGDKFAENAAVSEAT
VEAGIPDGHMGLDVGPKTRELFAAPIARAKLIVWNGPPGVFEFPNFANGT
KSIMDGVVAATKNGTVSIIGGGDTASCCAKWNTEALVSHVSTGGGASLEL
LEGKTLPGVAALTSA*

GH07208.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13875-PA 415 GF13875-PA 1..415 1..415 2058 94.9 Plus
Dana\GF13876-PA 396 GF13876-PA 1..396 20..415 1265 64.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24497-PA 415 GG24497-PA 1..415 1..415 2151 99.5 Plus
Dere\GG24499-PA 448 GG24499-PA 37..448 5..415 1328 62.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10571-PA 415 GH10571-PA 1..415 1..415 2040 93.3 Plus
Dgri\GH10572-PA 416 GH10572-PA 4..415 5..415 1288 58.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
Pgk-PE 415 CG3127-PE 1..415 1..415 2099 100 Plus
Pgk-PD 415 CG3127-PD 1..415 1..415 2099 100 Plus
Pgk-PC 415 CG3127-PC 1..415 1..415 2099 100 Plus
Pgk-PB 415 CG3127-PB 1..415 1..415 2099 100 Plus
Pgk-PA 415 CG3127-PA 1..415 1..415 2099 100 Plus
CG9961-PA 448 CG9961-PA 37..448 5..415 1298 62.6 Plus
CG9961-PB 102 CG9961-PB 37..91 5..59 190 69.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22935-PA 415 GI22935-PA 1..415 1..415 2057 94.7 Plus
Dmoj\GI22945-PA 463 GI22945-PA 49..461 4..415 1333 61.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26449-PA 415 GL26449-PA 1..415 1..415 2077 95.4 Plus
Dper\GL26450-PA 448 GL26450-PA 37..448 5..415 1292 61.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16139-PA 415 GA16139-PA 1..415 1..415 2077 95.4 Plus
Dpse\GA22152-PA 451 GA22152-PA 40..451 5..415 1294 61.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18205-PA 415 GM18205-PA 1..415 1..415 2145 99.3 Plus
Dsec\GM18206-PA 448 GM18206-PA 37..448 5..415 1310 61.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22810-PA 415 GD22810-PA 1..415 1..415 2153 99.5 Plus
Dsim\GD22811-PA 448 GD22811-PA 37..448 5..415 1303 61.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23480-PA 415 GJ23480-PA 1..415 1..415 2053 93.7 Plus
Dvir\GJ23491-PA 461 GJ23491-PA 50..460 5..415 1278 60 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24482-PA 415 GK24482-PA 1..415 1..415 2060 94.7 Plus
Dwil\GK24483-PA 466 GK24483-PA 55..464 6..415 1294 62.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15048-PA 415 GE15048-PA 1..415 1..415 2142 99 Plus
Dyak\GE15053-PA 397 GE15053-PA 1..397 20..415 1259 62.2 Plus