Clone GH07226 Report

Search the DGRC for GH07226

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:72
Well:26
Vector:pOT2
Associated Gene/TranscriptCG3907-RA
Protein status:GH07226.pep: gold
Sequenced Size:1702

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3907 2003-01-01 Sim4 clustering to Release 3
CG3907 2004-04-27 Blastp of sequenced clone
CG3907 2008-04-29 Release 5.5 accounting
CG3907 2008-08-15 Release 5.9 accounting
CG3907 2008-12-18 5.12 accounting

Clone Sequence Records

GH07226.complete Sequence

1702 bp (1702 high quality bases) assembled on 2004-04-27

GenBank Submission: BT014663

> GH07226.complete
TTTTTTATCAGTATAAGTACATGTTATGGTTGCTCCAGCATTACAAAAGC
AACTGGGCTACGCTGAGAAAATGTAATAGCCCAGCCCTGCGACCGATTGC
AAGAATTCCACTGGAGACCAGAGTTTCTAGAAGACGACCCCATGGACTGC
CACCATCGCATTGAAGTGCCCCTGCGGGCCGGAAAGAAAATGAAGAAGCG
TCGGGAGCTGGACGCCCTGATAGCCTCCCAGTCGTCCTCGGGCAAGAGAG
CCAACCGGAGAGTCCCCGGAGGCACCAACTCCCAGGACAAGCTGCTCTCC
GTCTCGACCGACGACCCTGAGGATTACGCATGGACAAATGTCGCTGGCAG
TCGCCGCAGCCATCGAAAAATAGCCTATTTCCGCATGTGCGGCCCGCTTC
TATTCGGCATTATGGGCATTCTGATTGTGGGAATTTTGTACTGGCTCTAC
TTCGATCTGCGCCAGCAACTCACCGACTATCGCCAGAAGATCGAGGAGGT
GTCTGCCATGAGCAAGAACTTCCCGGACACCCTGCAAAGATGGCACGAGA
CTTCGTCCTACCTGCTGAAGAACCAAACAGCCGTCATTTCGGAAATAAAT
GATTTGCAAAAATCAATGGAGAGCCTGCGGAACAACTTTAGCAACCTGGA
GGCGGCCGTGGCAGCGCAAAGAAACCACGGCAAGGACGAGAAGTTGGTGG
CTGATTTCGGGGCCAAGATAGAAGCCGTCGCCACCGACATAGAGGCCATC
AAGGAGCACTACAATAAGTACACCGAGGTGCAGAAAACACTGCAGGCCGA
AACGGAAGCCTTAAAGCTCAATCTCTCACAGCTACCCACGATTCAGGCTA
ACGCTTTACCCGCAAACTTATCGGATGATATTGCTGCGCTGAACAAAACC
ACTTTTAATTCATTTAAACTACTGGCCAACGATCTGAAGAATGTGAATAA
TACCCTAAGTCAAACAACGAAAATCCTCAGCGAGGAAATATCTCTGCACA
AGACGAAAATAGACGACCTGCTGGATCGATCTGAAAACATTACGTCCCAT
GTGGCCACAATAAGTAACAGCTGGCCGGAATATAAACAGAAAGTGACCAG
TTTCGATGAATCTTTGGAGAGAATTGAGAAAGAGATAACGCTGGCAAACA
ACAAGAACAATATGCTGGCCGCTTCCGTGGATCAGCTAAAGAACTTTTGC
ATTCAGAGCATGGGCAATATTAAAGCACCCAGCAGCGAAGACGGATCCGT
AGTCCCCAAGCCCGAAGCGATTGCCGTCAAGCAGGAAGTCATAAAGCCGT
CTGCAAATGCTACAGTGAAGCTTCAGGAATCCTTGAAGCTGTAAGCTGCT
GCATTGCTGCGTTGTATTACCAAATTTGTTCGATTCCGTATTTAGCCATT
AAGACCTCATGGATTCCATGTGTCCGAGTTACAGCCAACGATAACTAAAT
TACAATTACATTTATTGCACACGAAAACTGCAATGTACATATGGTTCGAA
GAGCTATTTAACTTAATGACAATTTATAGGATGACGATGTGCACGTGTGA
TTTCAGTTAAGCAGTTAAGTTTAGAAAGAGTAAATGTACATATGGGGGGG
GCGAAGTAAGTGTAAGTCCAACATTATTCACTTTAGATACACGATATGTA
TTTTATTTGCAAGTAATAAATCAAACTAAAGCTCAAAAAAAAAAAAAAAA
AA

GH07226.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3907-RA 1904 CG3907-RA 198..1886 1..1689 8430 99.9 Plus
CG3907-RB 1699 CG3907-RB 23..1698 10..1685 8380 100 Plus
CG3907.a 1712 CG3907.a 63..1711 37..1685 8245 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19905974..19906399 1684..1259 2100 99.5 Minus
chr2R 21145070 chr2R 19907865..19908197 333..1 1620 99.1 Minus
chr2R 21145070 chr2R 19907079..19907396 816..499 1590 100 Minus
chr2R 21145070 chr2R 19906831..19907018 1002..815 910 98.9 Minus
chr2R 21145070 chr2R 19907452..19907618 499..333 820 99.4 Minus
chr2R 21145070 chr2R 19906642..19906775 1134..1001 625 97.8 Minus
chr2R 21145070 chr2R 19906460..19906587 1260..1133 610 98.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:35:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24019893..24020323 1689..1259 2140 99.8 Minus
2R 25286936 2R 24021790..24022122 333..1 1665 100 Minus
2R 25286936 2R 24021003..24021320 816..499 1590 100 Minus
2R 25286936 2R 24020755..24020942 1002..815 940 100 Minus
2R 25286936 2R 24021376..24021542 499..333 835 100 Minus
2R 25286936 2R 24020566..24020699 1134..1001 670 100 Minus
2R 25286936 2R 24020384..24020511 1260..1133 640 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24021092..24021522 1689..1259 2140 99.7 Minus
2R 25260384 2R 24022989..24023321 333..1 1665 100 Minus
2R 25260384 2R 24022202..24022519 816..499 1590 100 Minus
2R 25260384 2R 24021954..24022141 1002..815 940 100 Minus
2R 25260384 2R 24022575..24022741 499..333 835 100 Minus
2R 25260384 2R 24021765..24021898 1134..1001 670 100 Minus
2R 25260384 2R 24021583..24021710 1260..1133 640 100 Minus
Blast to na_te.dros performed on 2019-03-16 00:48:19 has no hits.

GH07226.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:49:31 Download gff for GH07226.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19905974..19906397 1261..1684 99 <- Minus
chr2R 19906460..19906585 1135..1260 98 <- Minus
chr2R 19906642..19906773 1003..1134 97 <- Minus
chr2R 19906831..19907016 817..1002 98 <- Minus
chr2R 19907079..19907395 500..816 100 <- Minus
chr2R 19907452..19907617 334..499 99 <- Minus
chr2R 19907865..19908197 1..333 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:22:33 Download gff for GH07226.complete
Subject Subject Range Query Range Percent Splice Strand
CG3907-RA 1..1203 142..1344 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:36:52 Download gff for GH07226.complete
Subject Subject Range Query Range Percent Splice Strand
CG3907-RA 1..1203 142..1344 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:52:20 Download gff for GH07226.complete
Subject Subject Range Query Range Percent Splice Strand
CG3907-RB 1..1203 142..1344 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:20:41 Download gff for GH07226.complete
Subject Subject Range Query Range Percent Splice Strand
CG3907-RA 1..1203 142..1344 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:13:21 Download gff for GH07226.complete
Subject Subject Range Query Range Percent Splice Strand
CG3907-RB 1..1203 142..1344 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:44:16 Download gff for GH07226.complete
Subject Subject Range Query Range Percent Splice Strand
CG3907-RA 17..1700 1..1684 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:36:52 Download gff for GH07226.complete
Subject Subject Range Query Range Percent Splice Strand
CG3907-RA 17..1700 1..1684 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:52:20 Download gff for GH07226.complete
Subject Subject Range Query Range Percent Splice Strand
CG3907-RA 18..1701 1..1684 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:20:41 Download gff for GH07226.complete
Subject Subject Range Query Range Percent Splice Strand
CG3907-RA 17..1700 1..1684 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:13:21 Download gff for GH07226.complete
Subject Subject Range Query Range Percent Splice Strand
CG3907-RA 18..1701 1..1684 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:49:31 Download gff for GH07226.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24019898..24020321 1261..1684 100 <- Minus
2R 24020384..24020509 1135..1260 100 <- Minus
2R 24020566..24020697 1003..1134 100 <- Minus
2R 24020755..24020940 817..1002 100 <- Minus
2R 24021003..24021319 500..816 100 <- Minus
2R 24021376..24021541 334..499 100 <- Minus
2R 24021790..24022122 1..333 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:49:31 Download gff for GH07226.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24019898..24020321 1261..1684 100 <- Minus
2R 24020384..24020509 1135..1260 100 <- Minus
2R 24020566..24020697 1003..1134 100 <- Minus
2R 24020755..24020940 817..1002 100 <- Minus
2R 24021003..24021319 500..816 100 <- Minus
2R 24021376..24021541 334..499 100 <- Minus
2R 24021790..24022122 1..333 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:49:31 Download gff for GH07226.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24019898..24020321 1261..1684 100 <- Minus
2R 24020384..24020509 1135..1260 100 <- Minus
2R 24020566..24020697 1003..1134 100 <- Minus
2R 24020755..24020940 817..1002 100 <- Minus
2R 24021003..24021319 500..816 100 <- Minus
2R 24021376..24021541 334..499 100 <- Minus
2R 24021790..24022122 1..333 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:52:20 Download gff for GH07226.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19909313..19909645 1..333 100   Minus
arm_2R 19907421..19907844 1261..1684 100 <- Minus
arm_2R 19907907..19908032 1135..1260 100 <- Minus
arm_2R 19908089..19908220 1003..1134 100 <- Minus
arm_2R 19908278..19908463 817..1002 100 <- Minus
arm_2R 19908526..19908842 500..816 100 <- Minus
arm_2R 19908899..19909064 334..499 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:58:01 Download gff for GH07226.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24021115..24021538 1261..1684 100 <- Minus
2R 24021601..24021726 1135..1260 100 <- Minus
2R 24021783..24021914 1003..1134 100 <- Minus
2R 24021972..24022157 817..1002 100 <- Minus
2R 24022220..24022536 500..816 100 <- Minus
2R 24022593..24022758 334..499 100 <- Minus
2R 24023007..24023339 1..333 100   Minus

GH07226.pep Sequence

Translation from 141 to 1343

> GH07226.pep
MDCHHRIEVPLRAGKKMKKRRELDALIASQSSSGKRANRRVPGGTNSQDK
LLSVSTDDPEDYAWTNVAGSRRSHRKIAYFRMCGPLLFGIMGILIVGILY
WLYFDLRQQLTDYRQKIEEVSAMSKNFPDTLQRWHETSSYLLKNQTAVIS
EINDLQKSMESLRNNFSNLEAAVAAQRNHGKDEKLVADFGAKIEAVATDI
EAIKEHYNKYTEVQKTLQAETEALKLNLSQLPTIQANALPANLSDDIAAL
NKTTFNSFKLLANDLKNVNNTLSQTTKILSEEISLHKTKIDDLLDRSENI
TSHVATISNSWPEYKQKVTSFDESLERIEKEITLANNKNNMLAASVDQLK
NFCIQSMGNIKAPSSEDGSVVPKPEAIAVKQEVIKPSANATVKLQESLKL
*

GH07226.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12041-PA 402 GF12041-PA 1..402 1..400 1793 84.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19965-PA 400 GG19965-PA 1..400 1..400 2059 96 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21716-PA 344 GH21716-PA 1..328 1..331 982 58 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3907-PA 400 CG3907-PA 1..400 1..400 2017 100 Plus
CG3907-PB 400 CG3907-PB 1..400 1..400 2017 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20690-PA 339 GI20690-PA 1..336 1..342 931 53.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10433-PA 267 GL10433-PA 1..267 77..400 971 63.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17765-PA 397 GA17765-PA 1..397 1..400 1597 78.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15478-PA 400 GM15478-PA 1..400 1..400 2058 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20433-PA 338 GJ20433-PA 1..333 1..332 917 51.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21380-PA 401 GK21380-PA 1..401 1..400 1354 65.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11497-PA 400 GE11497-PA 1..400 1..400 2068 96.2 Plus

GH07226.hyp Sequence

Translation from 141 to 1343

> GH07226.hyp
MDCHHRIEVPLRAGKKMKKRRELDALIASQSSSGKRANRRVPGGTNSQDK
LLSVSTDDPEDYAWTNVAGSRRSHRKIAYFRMCGPLLFGIMGILIVGILY
WLYFDLRQQLTDYRQKIEEVSAMSKNFPDTLQRWHETSSYLLKNQTAVIS
EINDLQKSMESLRNNFSNLEAAVAAQRNHGKDEKLVADFGAKIEAVATDI
EAIKEHYNKYTEVQKTLQAETEALKLNLSQLPTIQANALPANLSDDIAAL
NKTTFNSFKLLANDLKNVNNTLSQTTKILSEEISLHKTKIDDLLDRSENI
TSHVATISNSWPEYKQKVTSFDESLERIEKEITLANNKNNMLAASVDQLK
NFCIQSMGNIKAPSSEDGSVVPKPEAIAVKQEVIKPSANATVKLQESLKL
*

GH07226.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3907-PA 400 CG3907-PA 1..400 1..400 2017 100 Plus
CG3907-PB 400 CG3907-PB 1..400 1..400 2017 100 Plus