BDGP Sequence Production Resources |
Search the DGRC for GH07253
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 72 |
Well: | 53 |
Vector: | pOT2 |
Associated Gene/Transcript | stops-RB |
Protein status: | GH07253.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 1750 |
Gene | Date | Evidence |
---|---|---|
CG15557 | 2001-01-01 | Release 2 assignment |
CG15558 | 2001-01-01 | Release 2 assignment |
CG15559 | 2001-01-01 | Release 2 assignment |
CG31006 | 2001-07-04 | Blastp of sequenced clone |
CG31006 | 2003-01-01 | Sim4 clustering to Release 3 |
su(rdgB)69 | 2008-04-29 | Release 5.5 accounting |
stops | 2008-08-15 | Release 5.9 accounting |
stops | 2008-12-18 | 5.12 accounting |
1750 bp (1750 high quality bases) assembled on 2001-07-04
GenBank Submission: AY047558
> GH07253.complete GGAAACTGAGTCACGGGCACGGCTGCGTCTGCGGGTGCGGGAACAACTGC GTCGGAATCCTGCCAATAGGGCCAGTCACCAGCGGAACCGGCGAACCCAG CGCCGCCATCTGGTCATGGACTACATCTTCGAGTGCTTCTTCGACGACAC CTTCGAGCAGATCTCCCGCAACGGACTGCAGGACCGCCAGTCGCGGCGAG ATGTCCTCGACCACCTGAGCTCCATCATCAAGGGCTGCAGCGGCGGCCAG AACTCGCAGACGGATGAGGTGGCCGCCATCGCGGTGACGGCGGCCATGAG GTACCACCGAATGGCCAAGGAGCAGAACGGCCAGGTCTGCCTCATGGGCA AGTATCACAACATCCTGTACATCGGACTGCGCACCTGCTGGGATTGGGGA GTCCGGGACTCGGAGGTGGTCGTCAAGCTGCTGGTGGCCATTTACGAGTG CGAGAAGACATATGAGCGCATTTTCCTGGGCGCCCTGTTTGGACCACATG CTCCGCACTTCATCGCCGGCTGGCGCAGTGACTTTCAGGATCAGCACGAG AATGTCCGGGCTATGGTTTACTTTCTGAAGCACGCCACACGCGAACAGCT CACATTGCCCGTCTGGATTCCGCGCTTCGAGCAGGAGCGACAGCTCAGAT TCATTGATGTCCCCATTGAGTCATGCGGCAAGTCCTCGCCCCTTCGCATT GCCCTACAGGCGAACGCTCCCGAACTGCTGCTCATACTGCTGAGATACGG CGCCGCACCGCAGCCGCCAGACGGAGGCGCCTCCGTAATTATAGCGCTGC TCGACAAACTCATCGAGGATGGCCGCAATTACAGCTTCGAACTGGTCATG TGCCTCAAGATTCTGCTGCGCAATGTGGTCATGATTGAGATGCCCTTCAA GCCCCTTTTATACGCTGCCCGAAGGGAAATGTTCTTCGATCGCTATGGCC GCCTTTTAATGGACAAGATTATCGGCAAAGAGCAGGTCTACGGAGTGCCC AGTCTACGTCATTTATGCCGCTGCTGTATCCGCGACGTCATGCGGATGCA CAATCAACTGCCAAGCGGCATCGACACGTTGAGGTTGCCAAAGCGCCTGC AACGCTACATCGATCTCACCGAGGAGCTTGAAGGACCTGAGGCACAGGAC ACGGAGGACAAGGATCAGCAGAGGGGAAAGTCCTCGGCCAAATGCAAGAT GGGAAGCGAGATGGGACGGCTGGATACAATCAGCAGTGCAGGGGAGAGCG AGGACGAGAGTGAGAATCAAGCGCAGCTCCTGCAGGCTGTCACGGATCCG GAAAAGGCCGCATTGGCGGCTTTCATGGCCACCGGCGATGGAGCGTATAC GGAGGAGGCCAAAAAGGCTGCGGTAGAGGCCTACGTGGCGGCCTGTCCAC CCGATTTCGATCCCGATTTTCCGCCAATTTCCTTGCCCGGCGAGCCCAGA TAGCAAAAAACACCCAGTACAAACACCAGCACTCACCGATAGGTTTCTTC GCTGACGTTGATGCGCCCCGGAACGCCAGTGGTCTCCGTCCGGCTGGTGA GATTGACAGTATTTCCGAACAGACAGTAGCGTGGCACTCGGTTGCCGATC ACTCCAGTCACCACTTCGCCGGAATGGATGCCTATGGTGATTTGCTGAAA AAACAAGGACCAAAACAAAGAATTTAGAATTGTAGAATTTGTAAGGAGTT TATCTAGCAAATAAATGTATAATCTGAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 26980528..26981235 | 1726..1020 | 3445 | 99.4 | Minus |
chr3R | 27901430 | chr3R | 26990384..26990719 | 336..1 | 1650 | 99.4 | Minus |
chr3R | 27901430 | chr3R | 26983545..26983703 | 901..743 | 795 | 100 | Minus |
chr3R | 27901430 | chr3R | 26983330..26983450 | 1020..900 | 575 | 98.3 | Minus |
chr3R | 27901430 | chr3R | 26988708..26988818 | 544..434 | 555 | 100 | Minus |
chr3R | 27901430 | chr3R | 26988534..26988640 | 648..542 | 535 | 100 | Minus |
chr3R | 27901430 | chr3R | 26989684..26989787 | 434..331 | 520 | 100 | Minus |
chr3R | 27901430 | chr3R | 26985897..26985995 | 744..646 | 480 | 99 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 31158155..31158862 | 1727..1020 | 3540 | 100 | Minus |
3R | 32079331 | 3R | 31168025..31168360 | 336..1 | 1680 | 100 | Minus |
3R | 32079331 | 3R | 31161173..31161331 | 901..743 | 795 | 100 | Minus |
3R | 32079331 | 3R | 31160958..31161078 | 1020..900 | 605 | 100 | Minus |
3R | 32079331 | 3R | 31166350..31166460 | 544..434 | 555 | 100 | Minus |
3R | 32079331 | 3R | 31166176..31166282 | 648..542 | 535 | 100 | Minus |
3R | 32079331 | 3R | 31167326..31167429 | 434..331 | 520 | 100 | Minus |
3R | 32079331 | 3R | 31163540..31163638 | 744..646 | 495 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 30898986..30899693 | 1727..1020 | 3540 | 100 | Minus |
3R | 31820162 | 3R | 30908856..30909191 | 336..1 | 1680 | 100 | Minus |
3R | 31820162 | 3R | 30902004..30902162 | 901..743 | 795 | 100 | Minus |
3R | 31820162 | 3R | 30901789..30901909 | 1020..900 | 605 | 100 | Minus |
3R | 31820162 | 3R | 30907181..30907291 | 544..434 | 555 | 100 | Minus |
3R | 31820162 | 3R | 30907007..30907113 | 648..542 | 535 | 100 | Minus |
3R | 31820162 | 3R | 30908157..30908260 | 434..331 | 520 | 100 | Minus |
3R | 31820162 | 3R | 30904371..30904469 | 744..646 | 495 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 26980528..26981234 | 1021..1726 | 99 | <- | Minus |
chr3R | 26983330..26983448 | 902..1020 | 98 | <- | Minus |
chr3R | 26983545..26983701 | 745..901 | 100 | <- | Minus |
chr3R | 26985897..26985992 | 649..744 | 98 | <- | Minus |
chr3R | 26988534..26988637 | 545..648 | 100 | <- | Minus |
chr3R | 26988708..26988817 | 435..544 | 100 | <- | Minus |
chr3R | 26989684..26989783 | 335..434 | 100 | <- | Minus |
chr3R | 26990386..26990719 | 1..334 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stops-RA | 114..1566 | 1..1453 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stops-RA | 114..1566 | 1..1453 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stops-RA | 114..1566 | 1..1453 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stops-RA | 114..1566 | 1..1453 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stops-RA | 114..1566 | 1..1453 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stops-RA | 245..1970 | 1..1726 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stops-RC | 426..2151 | 1..1726 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stops-RB | 381..2106 | 1..1726 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stops-RA | 245..1970 | 1..1726 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stops-RB | 384..2109 | 1..1726 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31158156..31158861 | 1021..1726 | 100 | <- | Minus |
3R | 31160958..31161076 | 902..1020 | 100 | <- | Minus |
3R | 31161173..31161329 | 745..901 | 100 | <- | Minus |
3R | 31163540..31163635 | 649..744 | 100 | <- | Minus |
3R | 31166176..31166279 | 545..648 | 100 | <- | Minus |
3R | 31166350..31166459 | 435..544 | 100 | <- | Minus |
3R | 31167326..31167425 | 335..434 | 100 | <- | Minus |
3R | 31168027..31168360 | 1..334 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31158156..31158861 | 1021..1726 | 100 | <- | Minus |
3R | 31160958..31161076 | 902..1020 | 100 | <- | Minus |
3R | 31161173..31161329 | 745..901 | 100 | <- | Minus |
3R | 31163540..31163635 | 649..744 | 100 | <- | Minus |
3R | 31166176..31166279 | 545..648 | 100 | <- | Minus |
3R | 31166350..31166459 | 435..544 | 100 | <- | Minus |
3R | 31167326..31167425 | 335..434 | 100 | <- | Minus |
3R | 31168027..31168360 | 1..334 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31158156..31158861 | 1021..1726 | 100 | <- | Minus |
3R | 31160958..31161076 | 902..1020 | 100 | <- | Minus |
3R | 31161173..31161329 | 745..901 | 100 | <- | Minus |
3R | 31163540..31163635 | 649..744 | 100 | <- | Minus |
3R | 31166176..31166279 | 545..648 | 100 | <- | Minus |
3R | 31166350..31166459 | 435..544 | 100 | <- | Minus |
3R | 31167326..31167425 | 335..434 | 100 | <- | Minus |
3R | 31168027..31168360 | 1..334 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 26983878..26984583 | 1021..1726 | 100 | <- | Minus |
arm_3R | 26986680..26986798 | 902..1020 | 100 | <- | Minus |
arm_3R | 26986895..26987051 | 745..901 | 100 | <- | Minus |
arm_3R | 26989262..26989357 | 649..744 | 100 | <- | Minus |
arm_3R | 26991898..26992001 | 545..648 | 100 | <- | Minus |
arm_3R | 26992072..26992181 | 435..544 | 100 | <- | Minus |
arm_3R | 26993048..26993147 | 335..434 | 100 | <- | Minus |
arm_3R | 26993749..26994082 | 1..334 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30904371..30904466 | 649..744 | 100 | <- | Minus |
3R | 30907007..30907110 | 545..648 | 100 | <- | Minus |
3R | 30907181..30907290 | 435..544 | 100 | <- | Minus |
3R | 30908157..30908256 | 335..434 | 100 | <- | Minus |
3R | 30898987..30899692 | 1021..1726 | 100 | <- | Minus |
3R | 30901789..30901907 | 902..1020 | 100 | <- | Minus |
3R | 30902004..30902160 | 745..901 | 100 | <- | Minus |
3R | 30908858..30909191 | 1..334 | 100 | Minus |
Translation from 1 to 1452
> GH07253.hyp ETESRARLRLRVREQLRRNPANRASHQRNRRTQRRHLVMDYIFECFFDDT FEQISRNGLQDRQSRRDVLDHLSSIIKGCSGGQNSQTDEVAAIAVTAAMR YHRMAKEQNGQVCLMGKYHNILYIGLRTCWDWGVRDSEVVVKLLVAIYEC EKTYERIFLGALFGPHAPHFIAGWRSDFQDQHENVRAMVYFLKHATREQL TLPVWIPRFEQERQLRFIDVPIESCGKSSPLRIALQANAPELLLILLRYG AAPQPPDGGASVIIALLDKLIEDGRNYSFELVMCLKILLRNVVMIEMPFK PLLYAARREMFFDRYGRLLMDKIIGKEQVYGVPSLRHLCRCCIRDVMRMH NQLPSGIDTLRLPKRLQRYIDLTEELEGPEAQDTEDKDQQRGKSSAKCKM GSEMGRLDTISSAGESEDESENQAQLLQAVTDPEKAALAAFMATGDGAYT EEAKKAAVEAYVAACPPDFDPDFPPISLPGEPR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
stops-PA | 521 | CG31006-PA | 39..521 | 1..483 | 2522 | 100 | Plus |
stops-PC | 445 | CG31006-PC | 1..445 | 39..483 | 2332 | 100 | Plus |
stops-PB | 445 | CG31006-PB | 1..445 | 39..483 | 2332 | 100 | Plus |
Translation from 115 to 1452
> GH07253.pep MDYIFECFFDDTFEQISRNGLQDRQSRRDVLDHLSSIIKGCSGGQNSQTD EVAAIAVTAAMRYHRMAKEQNGQVCLMGKYHNILYIGLRTCWDWGVRDSE VVVKLLVAIYECEKTYERIFLGALFGPHAPHFIAGWRSDFQDQHENVRAM VYFLKHATREQLTLPVWIPRFEQERQLRFIDVPIESCGKSSPLRIALQAN APELLLILLRYGAAPQPPDGGASVIIALLDKLIEDGRNYSFELVMCLKIL LRNVVMIEMPFKPLLYAARREMFFDRYGRLLMDKIIGKEQVYGVPSLRHL CRCCIRDVMRMHNQLPSGIDTLRLPKRLQRYIDLTEELEGPEAQDTEDKD QQRGKSSAKCKMGSEMGRLDTISSAGESEDESENQAQLLQAVTDPEKAAL AAFMATGDGAYTEEAKKAAVEAYVAACPPDFDPDFPPISLPGEPR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16597-PA | 520 | GF16597-PA | 77..501 | 1..432 | 1888 | 83.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11885-PA | 521 | GG11885-PA | 77..521 | 1..445 | 2339 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14342-PA | 508 | GH14342-PA | 63..484 | 1..417 | 1664 | 77 | Plus |
Dgri\GH23853-PA | 240 | GH23853-PA | 63..240 | 1..178 | 891 | 88.8 | Plus |
Dgri\GH20230-PA | 149 | GH20230-PA | 1..134 | 303..426 | 271 | 54.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
stops-PC | 445 | CG31006-PC | 1..445 | 1..445 | 2332 | 100 | Plus |
stops-PA | 521 | CG31006-PA | 77..521 | 1..445 | 2332 | 100 | Plus |
stops-PB | 445 | CG31006-PB | 1..445 | 1..445 | 2332 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10437-PA | 496 | GI10437-PA | 64..496 | 1..439 | 1745 | 76.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13954-PA | 452 | GL13954-PA | 1..433 | 1..435 | 1792 | 81.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15931-PB | 519 | GA15931-PB | 68..500 | 1..435 | 1792 | 81.7 | Plus |
Dpse\GA15931-PA | 452 | GA15931-PA | 1..433 | 1..435 | 1792 | 81.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12102-PA | 482 | GM12102-PA | 77..482 | 1..445 | 2095 | 89.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16578-PA | 521 | GD16578-PA | 77..521 | 1..445 | 2361 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10653-PA | 507 | GJ10653-PA | 63..474 | 1..414 | 1856 | 82.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22556-PA | 444 | GK22556-PA | 1..441 | 1..430 | 1714 | 79.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23333-PA | 523 | GE23333-PA | 79..523 | 1..445 | 2330 | 96.6 | Plus |