Clone GH07253 Report

Search the DGRC for GH07253

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:72
Well:53
Vector:pOT2
Associated Gene/Transcriptstops-RB
Protein status:GH07253.pep: gold
Preliminary Size:2200
Sequenced Size:1750

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15557 2001-01-01 Release 2 assignment
CG15558 2001-01-01 Release 2 assignment
CG15559 2001-01-01 Release 2 assignment
CG31006 2001-07-04 Blastp of sequenced clone
CG31006 2003-01-01 Sim4 clustering to Release 3
su(rdgB)69 2008-04-29 Release 5.5 accounting
stops 2008-08-15 Release 5.9 accounting
stops 2008-12-18 5.12 accounting

Clone Sequence Records

GH07253.complete Sequence

1750 bp (1750 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047558

> GH07253.complete
GGAAACTGAGTCACGGGCACGGCTGCGTCTGCGGGTGCGGGAACAACTGC
GTCGGAATCCTGCCAATAGGGCCAGTCACCAGCGGAACCGGCGAACCCAG
CGCCGCCATCTGGTCATGGACTACATCTTCGAGTGCTTCTTCGACGACAC
CTTCGAGCAGATCTCCCGCAACGGACTGCAGGACCGCCAGTCGCGGCGAG
ATGTCCTCGACCACCTGAGCTCCATCATCAAGGGCTGCAGCGGCGGCCAG
AACTCGCAGACGGATGAGGTGGCCGCCATCGCGGTGACGGCGGCCATGAG
GTACCACCGAATGGCCAAGGAGCAGAACGGCCAGGTCTGCCTCATGGGCA
AGTATCACAACATCCTGTACATCGGACTGCGCACCTGCTGGGATTGGGGA
GTCCGGGACTCGGAGGTGGTCGTCAAGCTGCTGGTGGCCATTTACGAGTG
CGAGAAGACATATGAGCGCATTTTCCTGGGCGCCCTGTTTGGACCACATG
CTCCGCACTTCATCGCCGGCTGGCGCAGTGACTTTCAGGATCAGCACGAG
AATGTCCGGGCTATGGTTTACTTTCTGAAGCACGCCACACGCGAACAGCT
CACATTGCCCGTCTGGATTCCGCGCTTCGAGCAGGAGCGACAGCTCAGAT
TCATTGATGTCCCCATTGAGTCATGCGGCAAGTCCTCGCCCCTTCGCATT
GCCCTACAGGCGAACGCTCCCGAACTGCTGCTCATACTGCTGAGATACGG
CGCCGCACCGCAGCCGCCAGACGGAGGCGCCTCCGTAATTATAGCGCTGC
TCGACAAACTCATCGAGGATGGCCGCAATTACAGCTTCGAACTGGTCATG
TGCCTCAAGATTCTGCTGCGCAATGTGGTCATGATTGAGATGCCCTTCAA
GCCCCTTTTATACGCTGCCCGAAGGGAAATGTTCTTCGATCGCTATGGCC
GCCTTTTAATGGACAAGATTATCGGCAAAGAGCAGGTCTACGGAGTGCCC
AGTCTACGTCATTTATGCCGCTGCTGTATCCGCGACGTCATGCGGATGCA
CAATCAACTGCCAAGCGGCATCGACACGTTGAGGTTGCCAAAGCGCCTGC
AACGCTACATCGATCTCACCGAGGAGCTTGAAGGACCTGAGGCACAGGAC
ACGGAGGACAAGGATCAGCAGAGGGGAAAGTCCTCGGCCAAATGCAAGAT
GGGAAGCGAGATGGGACGGCTGGATACAATCAGCAGTGCAGGGGAGAGCG
AGGACGAGAGTGAGAATCAAGCGCAGCTCCTGCAGGCTGTCACGGATCCG
GAAAAGGCCGCATTGGCGGCTTTCATGGCCACCGGCGATGGAGCGTATAC
GGAGGAGGCCAAAAAGGCTGCGGTAGAGGCCTACGTGGCGGCCTGTCCAC
CCGATTTCGATCCCGATTTTCCGCCAATTTCCTTGCCCGGCGAGCCCAGA
TAGCAAAAAACACCCAGTACAAACACCAGCACTCACCGATAGGTTTCTTC
GCTGACGTTGATGCGCCCCGGAACGCCAGTGGTCTCCGTCCGGCTGGTGA
GATTGACAGTATTTCCGAACAGACAGTAGCGTGGCACTCGGTTGCCGATC
ACTCCAGTCACCACTTCGCCGGAATGGATGCCTATGGTGATTTGCTGAAA
AAACAAGGACCAAAACAAAGAATTTAGAATTGTAGAATTTGTAAGGAGTT
TATCTAGCAAATAAATGTATAATCTGAAAAAAAAAAAAAAAAAAAAAAAA

GH07253.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
stops-RA 1970 stops-RA 245..1970 1..1726 8630 100 Plus
stops.a 1896 stops.a 171..1896 1..1726 8630 100 Plus
stops-RC 2174 stops-RC 449..2174 1..1726 8630 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26980528..26981235 1726..1020 3445 99.4 Minus
chr3R 27901430 chr3R 26990384..26990719 336..1 1650 99.4 Minus
chr3R 27901430 chr3R 26983545..26983703 901..743 795 100 Minus
chr3R 27901430 chr3R 26983330..26983450 1020..900 575 98.3 Minus
chr3R 27901430 chr3R 26988708..26988818 544..434 555 100 Minus
chr3R 27901430 chr3R 26988534..26988640 648..542 535 100 Minus
chr3R 27901430 chr3R 26989684..26989787 434..331 520 100 Minus
chr3R 27901430 chr3R 26985897..26985995 744..646 480 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:35:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31158155..31158862 1727..1020 3540 100 Minus
3R 32079331 3R 31168025..31168360 336..1 1680 100 Minus
3R 32079331 3R 31161173..31161331 901..743 795 100 Minus
3R 32079331 3R 31160958..31161078 1020..900 605 100 Minus
3R 32079331 3R 31166350..31166460 544..434 555 100 Minus
3R 32079331 3R 31166176..31166282 648..542 535 100 Minus
3R 32079331 3R 31167326..31167429 434..331 520 100 Minus
3R 32079331 3R 31163540..31163638 744..646 495 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30898986..30899693 1727..1020 3540 100 Minus
3R 31820162 3R 30908856..30909191 336..1 1680 100 Minus
3R 31820162 3R 30902004..30902162 901..743 795 100 Minus
3R 31820162 3R 30901789..30901909 1020..900 605 100 Minus
3R 31820162 3R 30907181..30907291 544..434 555 100 Minus
3R 31820162 3R 30907007..30907113 648..542 535 100 Minus
3R 31820162 3R 30908157..30908260 434..331 520 100 Minus
3R 31820162 3R 30904371..30904469 744..646 495 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:43:02 has no hits.

GH07253.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:44:01 Download gff for GH07253.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26980528..26981234 1021..1726 99 <- Minus
chr3R 26983330..26983448 902..1020 98 <- Minus
chr3R 26983545..26983701 745..901 100 <- Minus
chr3R 26985897..26985992 649..744 98 <- Minus
chr3R 26988534..26988637 545..648 100 <- Minus
chr3R 26988708..26988817 435..544 100 <- Minus
chr3R 26989684..26989783 335..434 100 <- Minus
chr3R 26990386..26990719 1..334 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:46:58 Download gff for GH07253.complete
Subject Subject Range Query Range Percent Splice Strand
stops-RA 114..1566 1..1453 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:29:16 Download gff for GH07253.complete
Subject Subject Range Query Range Percent Splice Strand
stops-RA 114..1566 1..1453 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:46:12 Download gff for GH07253.complete
Subject Subject Range Query Range Percent Splice Strand
stops-RA 114..1566 1..1453 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:02:40 Download gff for GH07253.complete
Subject Subject Range Query Range Percent Splice Strand
stops-RA 114..1566 1..1453 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:40:42 Download gff for GH07253.complete
Subject Subject Range Query Range Percent Splice Strand
stops-RA 114..1566 1..1453 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:46:57 Download gff for GH07253.complete
Subject Subject Range Query Range Percent Splice Strand
stops-RA 245..1970 1..1726 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:29:16 Download gff for GH07253.complete
Subject Subject Range Query Range Percent Splice Strand
stops-RC 426..2151 1..1726 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:12 Download gff for GH07253.complete
Subject Subject Range Query Range Percent Splice Strand
stops-RB 381..2106 1..1726 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:02:41 Download gff for GH07253.complete
Subject Subject Range Query Range Percent Splice Strand
stops-RA 245..1970 1..1726 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:42 Download gff for GH07253.complete
Subject Subject Range Query Range Percent Splice Strand
stops-RB 384..2109 1..1726 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:44:01 Download gff for GH07253.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31158156..31158861 1021..1726 100 <- Minus
3R 31160958..31161076 902..1020 100 <- Minus
3R 31161173..31161329 745..901 100 <- Minus
3R 31163540..31163635 649..744 100 <- Minus
3R 31166176..31166279 545..648 100 <- Minus
3R 31166350..31166459 435..544 100 <- Minus
3R 31167326..31167425 335..434 100 <- Minus
3R 31168027..31168360 1..334 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:44:01 Download gff for GH07253.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31158156..31158861 1021..1726 100 <- Minus
3R 31160958..31161076 902..1020 100 <- Minus
3R 31161173..31161329 745..901 100 <- Minus
3R 31163540..31163635 649..744 100 <- Minus
3R 31166176..31166279 545..648 100 <- Minus
3R 31166350..31166459 435..544 100 <- Minus
3R 31167326..31167425 335..434 100 <- Minus
3R 31168027..31168360 1..334 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:44:01 Download gff for GH07253.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31158156..31158861 1021..1726 100 <- Minus
3R 31160958..31161076 902..1020 100 <- Minus
3R 31161173..31161329 745..901 100 <- Minus
3R 31163540..31163635 649..744 100 <- Minus
3R 31166176..31166279 545..648 100 <- Minus
3R 31166350..31166459 435..544 100 <- Minus
3R 31167326..31167425 335..434 100 <- Minus
3R 31168027..31168360 1..334 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:12 Download gff for GH07253.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26983878..26984583 1021..1726 100 <- Minus
arm_3R 26986680..26986798 902..1020 100 <- Minus
arm_3R 26986895..26987051 745..901 100 <- Minus
arm_3R 26989262..26989357 649..744 100 <- Minus
arm_3R 26991898..26992001 545..648 100 <- Minus
arm_3R 26992072..26992181 435..544 100 <- Minus
arm_3R 26993048..26993147 335..434 100 <- Minus
arm_3R 26993749..26994082 1..334 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:40:41 Download gff for GH07253.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30904371..30904466 649..744 100 <- Minus
3R 30907007..30907110 545..648 100 <- Minus
3R 30907181..30907290 435..544 100 <- Minus
3R 30908157..30908256 335..434 100 <- Minus
3R 30898987..30899692 1021..1726 100 <- Minus
3R 30901789..30901907 902..1020 100 <- Minus
3R 30902004..30902160 745..901 100 <- Minus
3R 30908858..30909191 1..334 100   Minus

GH07253.hyp Sequence

Translation from 1 to 1452

> GH07253.hyp
ETESRARLRLRVREQLRRNPANRASHQRNRRTQRRHLVMDYIFECFFDDT
FEQISRNGLQDRQSRRDVLDHLSSIIKGCSGGQNSQTDEVAAIAVTAAMR
YHRMAKEQNGQVCLMGKYHNILYIGLRTCWDWGVRDSEVVVKLLVAIYEC
EKTYERIFLGALFGPHAPHFIAGWRSDFQDQHENVRAMVYFLKHATREQL
TLPVWIPRFEQERQLRFIDVPIESCGKSSPLRIALQANAPELLLILLRYG
AAPQPPDGGASVIIALLDKLIEDGRNYSFELVMCLKILLRNVVMIEMPFK
PLLYAARREMFFDRYGRLLMDKIIGKEQVYGVPSLRHLCRCCIRDVMRMH
NQLPSGIDTLRLPKRLQRYIDLTEELEGPEAQDTEDKDQQRGKSSAKCKM
GSEMGRLDTISSAGESEDESENQAQLLQAVTDPEKAALAAFMATGDGAYT
EEAKKAAVEAYVAACPPDFDPDFPPISLPGEPR*

GH07253.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
stops-PA 521 CG31006-PA 39..521 1..483 2522 100 Plus
stops-PC 445 CG31006-PC 1..445 39..483 2332 100 Plus
stops-PB 445 CG31006-PB 1..445 39..483 2332 100 Plus

GH07253.pep Sequence

Translation from 115 to 1452

> GH07253.pep
MDYIFECFFDDTFEQISRNGLQDRQSRRDVLDHLSSIIKGCSGGQNSQTD
EVAAIAVTAAMRYHRMAKEQNGQVCLMGKYHNILYIGLRTCWDWGVRDSE
VVVKLLVAIYECEKTYERIFLGALFGPHAPHFIAGWRSDFQDQHENVRAM
VYFLKHATREQLTLPVWIPRFEQERQLRFIDVPIESCGKSSPLRIALQAN
APELLLILLRYGAAPQPPDGGASVIIALLDKLIEDGRNYSFELVMCLKIL
LRNVVMIEMPFKPLLYAARREMFFDRYGRLLMDKIIGKEQVYGVPSLRHL
CRCCIRDVMRMHNQLPSGIDTLRLPKRLQRYIDLTEELEGPEAQDTEDKD
QQRGKSSAKCKMGSEMGRLDTISSAGESEDESENQAQLLQAVTDPEKAAL
AAFMATGDGAYTEEAKKAAVEAYVAACPPDFDPDFPPISLPGEPR*

GH07253.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16597-PA 520 GF16597-PA 77..501 1..432 1888 83.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11885-PA 521 GG11885-PA 77..521 1..445 2339 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14342-PA 508 GH14342-PA 63..484 1..417 1664 77 Plus
Dgri\GH23853-PA 240 GH23853-PA 63..240 1..178 891 88.8 Plus
Dgri\GH20230-PA 149 GH20230-PA 1..134 303..426 271 54.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
stops-PC 445 CG31006-PC 1..445 1..445 2332 100 Plus
stops-PA 521 CG31006-PA 77..521 1..445 2332 100 Plus
stops-PB 445 CG31006-PB 1..445 1..445 2332 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10437-PA 496 GI10437-PA 64..496 1..439 1745 76.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13954-PA 452 GL13954-PA 1..433 1..435 1792 81.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15931-PB 519 GA15931-PB 68..500 1..435 1792 81.7 Plus
Dpse\GA15931-PA 452 GA15931-PA 1..433 1..435 1792 81.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12102-PA 482 GM12102-PA 77..482 1..445 2095 89.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16578-PA 521 GD16578-PA 77..521 1..445 2361 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10653-PA 507 GJ10653-PA 63..474 1..414 1856 82.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22556-PA 444 GK22556-PA 1..441 1..430 1714 79.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23333-PA 523 GE23333-PA 79..523 1..445 2330 96.6 Plus