Clone GH07286 Report

Search the DGRC for GH07286

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:72
Well:86
Vector:pOT2
Associated Gene/TranscriptCG13850-RA
Protein status:GH07286.pep: gold
Preliminary Size:2200
Sequenced Size:1877

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13850 2001-01-01 Release 2 assignment
CG13850 2001-09-19 Blastp of sequenced clone
CG13850 2003-01-01 Sim4 clustering to Release 3
CG13850 2008-04-29 Release 5.5 accounting
CG13850 2008-08-15 Release 5.9 accounting
CG13850 2008-12-18 5.12 accounting

Clone Sequence Records

GH07286.complete Sequence

1877 bp (1877 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058310

> GH07286.complete
CTGAACGCTGCTGTCATCTGTGGATTCTCAACGTTCAATAGCGTGTGGAT
TGACTGAAAATGTTGGGACTACAACGTTTTGCCGGCAGTTTTGTCACCCA
GTTGTACCGCCGTGCAGCCTTCAGCAGCAGTGTCCGGGCAGCGGGCATTC
CCGTGGCGCCCACTGGAGCACAATCGGATGCAGTGGAGCCGGAAGCACGC
GCGCCGGCTGTGGAGGAGGCGGCCAAAAAGCCCAGGGGCCACATGGTAGC
CGCTGCTTTCGAATCCCTTAGAAACGACGATCCCAAAGATGAGAGCAAAA
GCCAAGCCTCCAGCAAGATCGATGAGCGTATCATCAACGCAAAGACAGTC
AATGGACTGCTAACTATCACGGAGAACAACAATGGCTTCTCGAGGAAGCA
TGCCCTCAGAATTGTCTCCATACTGGCCGAGTGGAGCACCTTGAATCGAG
TAAAGATCTCGGAATTCGAGAACGACACAAGGTTCCTACGTATTTGCCGG
ATGTTGGGCCGGACGGTTCCCAAAAATAATAATGCTAACAACAAGGACCT
TGGTGACAATGGGACGGCCAAGCGGATTTCCGGCTTCCGAACAGATGACC
TAAACACGGTGCTTGGCGTAGCTGGTGACGATGAGGCCGCTAAGCTGATA
GCTAGCATCAGTCTGCCCCAGATGGTCAAGGTGATGAGCACCCTGGCCCA
GCGGAAGAGGCGTAGTACTCCTCTCTTGCGCTCCCTGGCCTTTAATATCA
GCAGCGCGTCGGAATCGCTGGATTTAAAGCAAGCGGGGGATGTGCTGTTC
GCTATGTCCACGTTGAATTTCCAGGATTCTGTTCTAGGCGCTAAAGTGTG
TGCGGATGTGCAATCGGCGCTGCCTAAGAATGTGGAGAAGTCTGCCGTTG
TGGGATCCATTATCACCAGCCTGGGCATTTTACGATACCGGGATTTGGAT
ATCTTGGAATCACTTACGCAGTGGCTTTTAAAGAATAGTGAAATCTGTCG
CCCCCAAGATCTCAGTGCCTATTTCCTAACATCGGCCCTGCTAAACTTCA
AAAGCGCTCAATTGGAGGAAGTGAGCAAAAAGCTAGTAAAGTCTATTGTC
CGCGAGGATTTTACCAAGCAATCCGAGTGGTTGAGCTTTGTGTGGTCGCT
AACAATGTTGGGTCTAGTAGAACACGGCCACTTGGCTTCTGTTTTGAGTG
CGGACTTCCTAGAGACGTTGAAAAAGGACAAAGCTGGTGTCACAGCTACC
TCCAAAATGAGGCTACTCAACTTGAATAGCTATGCCCAGTTAATAGCCAC
AGATTACAAGGGTCCACTATTGCCCACTGACAGTCCTGTCTATCAGGTGC
CCATGGCTCATCCTAAAGCAAAGCAAGTGCTTGTAAATGGAATGCTAGAT
GCCCTGAAAAGTCTGCTGCCGGCCAGCAATCATTTACAAACTGCTGTAGA
CACTAAAATGGGCTTCCTTATAGATGCACTGTGCCATTTTGATGCTAACA
AAAACCCCCTGCCTTTGGACAAGGAAAATCCGAATGCAATAAGGGTGGCG
CTGATGGTCATCGATTTCCATGACATTTGCCACGGAACGCATCGCAGTGG
CAGCGGCGTTACGAATCTGACATTTGATCTGCTAGAGAAGAGTGGTTACC
ACGTTATTCCCGTGCCCTATAATGAGTTCAGCACCAGTGACAAACTACTG
AAACGCGTTCAGTATTTGGAGTCAAAGTTCAAGGCGATTGCAAGTAGCAA
ATAATTGCAGTTATAGTTTATTTAATTTTTCTTGTAATGATTGATCAATA
TTTGAATTGTTAAAATTTTGTAAATGTTAAATTAGGCGCTGAATTACAAG
CTAAACCCAAAAAAAAAAAAAAAAAAA

GH07286.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13850.a 1961 CG13850.a 19..1883 1..1861 9240 99.7 Plus
CG13850-RA 1883 CG13850-RA 19..1883 1..1861 9240 99.7 Plus
CG13855-RA 2347 CG13855-RA 2253..2347 1861..1767 475 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18233247..18233958 948..237 3545 99.9 Minus
chr3R 27901430 chr3R 18232101..18232417 1858..1542 1555 99.4 Minus
chr3R 27901430 chr3R 18232598..18232879 1473..1192 1350 98.6 Minus
chr3R 27901430 chr3R 18232934..18233184 1198..948 1240 99.6 Minus
chr3R 27901430 chr3R 18234020..18234218 238..40 980 99.5 Minus
chr3R 27901430 chr3R 18232474..18232546 1544..1472 365 100 Minus
chr3R 27901430 chr3R 18234392..18234432 41..1 205 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:36:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22409712..22410423 948..237 3560 100 Minus
3R 32079331 3R 22408563..22408882 1861..1542 1600 100 Minus
3R 32079331 3R 22409063..22409343 1473..1193 1390 99.6 Minus
3R 32079331 3R 22409399..22409649 1198..948 1255 100 Minus
3R 32079331 3R 22410485..22410683 238..40 995 100 Minus
3R 32079331 3R 22408939..22409011 1544..1472 365 100 Minus
3R 32079331 3R 22410857..22410897 41..1 205 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22150543..22151254 948..237 3560 100 Minus
3R 31820162 3R 22149394..22149713 1861..1542 1600 100 Minus
3R 31820162 3R 22149894..22150174 1473..1193 1390 99.6 Minus
3R 31820162 3R 22150230..22150480 1198..948 1255 100 Minus
3R 31820162 3R 22151316..22151514 238..40 995 100 Minus
3R 31820162 3R 22149770..22149842 1544..1472 365 100 Minus
3R 31820162 3R 22151688..22151728 41..1 205 100 Minus
Blast to na_te.dros performed on 2019-03-15 17:16:48 has no hits.

GH07286.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:17:28 Download gff for GH07286.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18234021..18234216 42..237 99 <- Minus
chr3R 18234388..18234432 1..41 91   Minus
chr3R 18232101..18232415 1544..1858 99 <- Minus
chr3R 18232475..18232544 1474..1543 100 <- Minus
chr3R 18232598..18232872 1199..1473 98 <- Minus
chr3R 18232934..18233183 949..1198 99 <- Minus
chr3R 18233247..18233957 238..948 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:22:52 Download gff for GH07286.complete
Subject Subject Range Query Range Percent Splice Strand
CG13850-RA 1..1695 60..1754 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:09:13 Download gff for GH07286.complete
Subject Subject Range Query Range Percent Splice Strand
CG13850-RA 1..1695 60..1754 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:30:46 Download gff for GH07286.complete
Subject Subject Range Query Range Percent Splice Strand
CG13850-RA 1..1695 60..1754 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:40:08 Download gff for GH07286.complete
Subject Subject Range Query Range Percent Splice Strand
CG13850-RA 1..1695 60..1754 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:32:18 Download gff for GH07286.complete
Subject Subject Range Query Range Percent Splice Strand
CG13850-RA 1..1695 60..1754 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:00:06 Download gff for GH07286.complete
Subject Subject Range Query Range Percent Splice Strand
CG13850-RA 19..1880 1..1858 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:09:13 Download gff for GH07286.complete
Subject Subject Range Query Range Percent Splice Strand
CG13850-RA 19..1880 1..1858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:30:46 Download gff for GH07286.complete
Subject Subject Range Query Range Percent Splice Strand
CG13850-RA 19..1876 1..1858 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:40:08 Download gff for GH07286.complete
Subject Subject Range Query Range Percent Splice Strand
CG13850-RA 19..1880 1..1858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:32:18 Download gff for GH07286.complete
Subject Subject Range Query Range Percent Splice Strand
CG13850-RA 19..1876 1..1858 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:17:28 Download gff for GH07286.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22408566..22408880 1544..1858 100 <- Minus
3R 22408940..22409009 1474..1543 100 <- Minus
3R 22409063..22409337 1199..1473 100 <- Minus
3R 22409399..22409648 949..1198 100 <- Minus
3R 22409712..22410422 238..948 100 <- Minus
3R 22410486..22410681 42..237 100 <- Minus
3R 22410853..22410897 1..41 91   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:17:28 Download gff for GH07286.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22408566..22408880 1544..1858 100 <- Minus
3R 22408940..22409009 1474..1543 100 <- Minus
3R 22409063..22409337 1199..1473 100 <- Minus
3R 22409399..22409648 949..1198 100 <- Minus
3R 22409712..22410422 238..948 100 <- Minus
3R 22410486..22410681 42..237 100 <- Minus
3R 22410853..22410897 1..41 91   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:17:28 Download gff for GH07286.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22408566..22408880 1544..1858 100 <- Minus
3R 22408940..22409009 1474..1543 100 <- Minus
3R 22409063..22409337 1199..1473 100 <- Minus
3R 22409399..22409648 949..1198 100 <- Minus
3R 22409712..22410422 238..948 100 <- Minus
3R 22410486..22410681 42..237 100 <- Minus
3R 22410853..22410897 1..41 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:30:46 Download gff for GH07286.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18235121..18235370 949..1198 100 <- Minus
arm_3R 18234662..18234731 1474..1543 100 <- Minus
arm_3R 18234785..18235059 1199..1473 100 <- Minus
arm_3R 18234288..18234602 1544..1858 100 <- Minus
arm_3R 18235434..18236144 238..948 100 <- Minus
arm_3R 18236208..18236403 42..237 100 <- Minus
arm_3R 18236575..18236619 1..41 91   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:17:37 Download gff for GH07286.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22150230..22150479 949..1198 100 <- Minus
3R 22149397..22149711 1544..1858 100 <- Minus
3R 22149771..22149840 1474..1543 100 <- Minus
3R 22149894..22150168 1199..1473 100 <- Minus
3R 22150543..22151253 238..948 100 <- Minus
3R 22151317..22151512 42..237 100 <- Minus
3R 22151684..22151728 1..41 91   Minus

GH07286.pep Sequence

Translation from 59 to 1753

> GH07286.pep
MLGLQRFAGSFVTQLYRRAAFSSSVRAAGIPVAPTGAQSDAVEPEARAPA
VEEAAKKPRGHMVAAAFESLRNDDPKDESKSQASSKIDERIINAKTVNGL
LTITENNNGFSRKHALRIVSILAEWSTLNRVKISEFENDTRFLRICRMLG
RTVPKNNNANNKDLGDNGTAKRISGFRTDDLNTVLGVAGDDEAAKLIASI
SLPQMVKVMSTLAQRKRRSTPLLRSLAFNISSASESLDLKQAGDVLFAMS
TLNFQDSVLGAKVCADVQSALPKNVEKSAVVGSIITSLGILRYRDLDILE
SLTQWLLKNSEICRPQDLSAYFLTSALLNFKSAQLEEVSKKLVKSIVRED
FTKQSEWLSFVWSLTMLGLVEHGHLASVLSADFLETLKKDKAGVTATSKM
RLLNLNSYAQLIATDYKGPLLPTDSPVYQVPMAHPKAKQVLVNGMLDALK
SLLPASNHLQTAVDTKMGFLIDALCHFDANKNPLPLDKENPNAIRVALMV
IDFHDICHGTHRSGSGVTNLTFDLLEKSGYHVIPVPYNEFSTSDKLLKRV
QYLESKFKAIASSK*

GH07286.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16569-PA 565 GF16569-PA 1..563 1..563 2484 83.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12520-PA 505 GG12520-PA 1..495 1..495 2464 93.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20439-PA 572 GH20439-PA 1..572 1..564 2329 78.5 Plus
Dgri\GH17507-PA 572 GH17507-PA 1..572 1..564 2306 77.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13850-PB 564 CG13850-PB 1..564 1..564 2826 100 Plus
CG13850-PA 564 CG13850-PA 1..564 1..564 2826 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10374-PA 580 GI10374-PA 1..579 1..562 2217 74.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23341-PA 565 GL23341-PA 1..565 1..564 2528 83.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12571-PA 565 GA12571-PA 1..565 1..564 2523 83.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23655-PA 543 GM23655-PA 1..543 1..564 2777 94.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18463-PA 301 GD18463-PA 1..291 205..495 1511 99.3 Plus
Dsim\GD18462-PA 178 GD18462-PA 1..173 1..173 870 96 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22836-PA 584 GJ22836-PA 1..584 1..564 2282 76 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12980-PA 570 GK12980-PA 1..570 1..564 2373 79 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24042-PA 505 GE24042-PA 1..495 1..495 2441 93.7 Plus

GH07286.hyp Sequence

Translation from 59 to 1753

> GH07286.hyp
MLGLQRFAGSFVTQLYRRAAFSSSVRAAGIPVAPTGAQSDAVEPEARAPA
VEEAAKKPRGHMVAAAFESLRNDDPKDESKSQASSKIDERIINAKTVNGL
LTITENNNGFSRKHALRIVSILAEWSTLNRVKISEFENDTRFLRICRMLG
RTVPKNNNANNKDLGDNGTAKRISGFRTDDLNTVLGVAGDDEAAKLIASI
SLPQMVKVMSTLAQRKRRSTPLLRSLAFNISSASESLDLKQAGDVLFAMS
TLNFQDSVLGAKVCADVQSALPKNVEKSAVVGSIITSLGILRYRDLDILE
SLTQWLLKNSEICRPQDLSAYFLTSALLNFKSAQLEEVSKKLVKSIVRED
FTKQSEWLSFVWSLTMLGLVEHGHLASVLSADFLETLKKDKAGVTATSKM
RLLNLNSYAQLIATDYKGPLLPTDSPVYQVPMAHPKAKQVLVNGMLDALK
SLLPASNHLQTAVDTKMGFLIDALCHFDANKNPLPLDKENPNAIRVALMV
IDFHDICHGTHRSGSGVTNLTFDLLEKSGYHVIPVPYNEFSTSDKLLKRV
QYLESKFKAIASSK*

GH07286.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG13850-PB 564 CG13850-PB 1..564 1..564 2826 100 Plus
CG13850-PA 564 CG13850-PA 1..564 1..564 2826 100 Plus