Clone GH07323 Report

Search the DGRC for GH07323

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:73
Well:23
Vector:pOT2
Associated Gene/TranscriptNha2-RA
Protein status:GH07323.pep: gold
Preliminary Size:2194
Sequenced Size:2144

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4682 2001-01-01 Release 2 assignment
CG4693 2001-01-01 Release 2 assignment
CG31052 2001-09-19 Blastp of sequenced clone
CG31052 2003-01-01 Sim4 clustering to Release 3
Tango12 2008-04-29 Release 5.5 accounting
Tango12 2008-08-15 Release 5.9 accounting
Nha2 2008-12-18 5.12 accounting

Clone Sequence Records

GH07323.complete Sequence

2144 bp (2144 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058312

> GH07323.complete
CGGCATTAAAATTGTGCGGTTCGGTTGTGAAACTGTTTCAATAAAATCGC
ATTTTCCACTGAATCGGAATGCGTGATGAATTTGAATACTGTTAGTTTTA
TGAGTGCAATCTAATTAAATTATCCGCCGAACAGCAAAACGCAGCAGACA
GCAGCCAAATCAGTGGCAGCTGCAGCAGCAACAGCAGCCGTCAAGCAACA
ACAACAACACCAAAAGGGCACTGGCGCCAGGTGACAACATGACACAAGGT
GCAGCGCCGCAGGACTCACAGGGCGACATCCTGCCCACCCGCCCGCTGCA
TACCAAATTAGACATACAGAAAATCCCAGAGGATGAGGCTGGCGCTGACG
CCACACAAAACGCTGCAACAATAATTTTAACGCCGACATCATTAAATTTA
ACAAATACAACAACACAAAATGTTGCCGCCAACAATGCGGGCAACTCCAG
CACCACCACCAGCACCAACACCAACTACGGCCCAGGATCCGTCTCCGGCT
ACCCAACTCCGAACGCAACTCCGGGCGACGAGTACAAAGGACCCAAATGG
TGGCTATATATCCGTTCGCATTGGGTGAACACTTCCGAGCTGGTGGCCCT
ACTGGCCATTTTCCTGGGCCTTTGGGCCATGGGCTGGGTTCTGCTGCCGG
AGTACTCCCAACCACCGACCGTCATCATGCGCATTGCATTCCTCTTTGTG
GGCGCCCAGATCTCCGGCATCCTGGTCACCTTTGTCCATCTGCCCGACAT
GCTGGGCATGCTTTTCTTTGGCGTACTTTATGCCAACCTGGGCCTGGCCA
ATTTCGAGGGCTATCAGAAGTTTGAGCTGTTCCTCAGGGAAATGGCCCTG
ATCAACATCATGTTGCTGGCTGGCCTCGGGCTGGATGGAGATGCCTTCAA
GCGGCTGTGGTTCATGATACTCCGGTTAACCCTGCTGCCCACAATTGTGG
AGGTGGCAGCCATCGCCGGACTGGCCAATCTTACACTCTCCATGCCCTGG
CTGTGGGGCATTGCTTTGGGCCTTGTCATCACCGCCGTTTCACCGAATGT
GGTCGTCACCGTGATGCTGAAGTTGAAGGAGGATCGACTCGGCCTGAACA
GCGGCATTCATACGCTCATCTATGCCATGACCACATGCAACGATGTGGTA
GCCATCTTCATGTTTGGCGTGATAATCAGCGTAATATTCTCAACGACTTC
GCTTACCCAGCAAGTGCTGCAGGGTCCCATTGGCATCGGGATTGGACTCG
TTTTTGGCTATCTCTACGGCTCGATGCTCCAGTACTTGCCATCCCGGAAC
GCGACGTACGCAAATGGCCTCCGCTTCGTACTCACCATCTTGGGCGGAAC
CATCGCCGTGATGGGCAGCCGCGTCATCGGTTATACGTCGGCCGGAGCCC
TGGGTTGTGTAACGACCGCCTTTATTGCGAGGATTGGCTGGCGACGGGAG
GAGACCAGACTGACGCCCCAGCAGCTGCAGGCCCAGCAAATTGCGAGTGT
GCCCAAGCGACTGGACCTCATGTGGAAGTTCCTCAAGCCCGTCTCGTTTG
CGCTCATTGGCAAGGAAATTAATTTCAACGTGCTGCAGGGCCATGTAATC
GGTTATGGCGCATTGTTGGTGCTCGTCGGAAGTTTGTTTCGCCTGGCTTT
TGCATATTTATCCACATATGGCGGAAATCTGTCGAGAAAGGAACGTGCCT
ACATTACAATTTCCGGTTTTCCCAAAGCAACTGTCCAAGCCGCCTTGGGT
CCAGTGGCTTTGGACATGGCACGTGCTGCCAGCGTGGCCAGTCCGGAACA
GCTTGCGCTGGCCGGGAATTTGCTCATCATCTCGGTGCTGGCGATTATAT
TCACCGCCCCGCTGGGCGCCATTCTCATGCTGCGGTTGGCGCCATATTGG
CTCAAACATGGAGATGCAGTGGAGGCGGTTGACTCTCCAACCACGCCCAT
CGCCCCCACGCTGGGCAGCACCAATTCCTCGAAGGGGACATAGCTTCAGG
TTGATCTGGAGCCGAAACTTTTAATCCATGCCGTACTTATGTAGCCATTT
CATTCGTACTTATACTTACGTGTACTTAGGTATTACGCTGTTCAAATAAA
AGTAAATGCGAAAAGTTAGCAATATAAAAAAAAAAAAAAAAAAA

GH07323.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
Nha2-RA 2222 Nha2-RA 85..2210 1..2126 10615 99.9 Plus
Nha2.a 2062 Nha2.a 38..1673 1..1636 8180 100 Plus
Nha2.a 2062 Nha2.a 1674..2061 1739..2126 1925 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18814536..18814956 551..131 2105 100 Minus
chr3R 27901430 chr3R 18804875..18805258 2122..1739 1875 99.2 Minus
chr3R 27901430 chr3R 18810204..18810493 838..549 1450 100 Minus
chr3R 27901430 chr3R 18807276..18807471 1498..1303 965 99.5 Minus
chr3R 27901430 chr3R 18809964..18810148 1020..836 910 99.5 Minus
chr3R 27901430 chr3R 18809711..18809887 1196..1020 855 98.9 Minus
chr3R 27901430 chr3R 18806432..18806575 1636..1493 720 100 Minus
chr3R 27901430 chr3R 18816792..18816925 134..1 670 100 Minus
chr3R 27901430 chr3R 18809514..18809618 1303..1199 525 100 Minus
chr3R 27901430 chr3R 18805999..18806102 1739..1636 520 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:36:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22991135..22991555 551..131 2105 100 Minus
3R 32079331 3R 22981458..22981845 2126..1739 1925 99.7 Minus
3R 32079331 3R 22986803..22987092 838..549 1450 100 Minus
3R 32079331 3R 22983873..22984068 1498..1303 965 99.5 Minus
3R 32079331 3R 22986563..22986747 1020..836 925 100 Minus
3R 32079331 3R 22986310..22986486 1196..1020 885 100 Minus
3R 32079331 3R 22983024..22983167 1636..1493 720 100 Minus
3R 32079331 3R 22993391..22993524 134..1 670 100 Minus
3R 32079331 3R 22986113..22986219 1303..1197 535 100 Minus
3R 32079331 3R 22982592..22982695 1739..1636 520 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22731966..22732386 551..131 2105 100 Minus
3R 31820162 3R 22722289..22722676 2126..1739 1925 99.7 Minus
3R 31820162 3R 22727634..22727923 838..549 1450 100 Minus
3R 31820162 3R 22724704..22724899 1498..1303 965 99.4 Minus
3R 31820162 3R 22727394..22727578 1020..836 925 100 Minus
3R 31820162 3R 22727141..22727317 1196..1020 885 100 Minus
3R 31820162 3R 22723855..22723998 1636..1493 720 100 Minus
3R 31820162 3R 22734222..22734355 134..1 670 100 Minus
3R 31820162 3R 22726944..22727050 1303..1197 535 100 Minus
3R 31820162 3R 22723423..22723526 1739..1636 520 100 Minus
Blast to na_te.dros performed 2019-03-16 23:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2406..2532 351..475 126 56.7 Plus

GH07323.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:38:46 Download gff for GH07323.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18814538..18814874 213..549 100 == Minus
chr3R 18804872..18805258 1739..2125 98 <- Minus
chr3R 18806000..18806101 1637..1738 100 <- Minus
chr3R 18806432..18806575 1493..1636 100 <- Minus
chr3R 18807282..18807470 1304..1492 100 <- Minus
chr3R 18809514..18809620 1197..1303 99 <- Minus
chr3R 18809711..18809886 1021..1196 98 <- Minus
chr3R 18809964..18810146 838..1020 99 <- Minus
chr3R 18810205..18810492 550..837 100 <- Minus
chr3R 18816792..18816925 1..134 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:55:41 Download gff for GH07323.complete
Subject Subject Range Query Range Percent Splice Strand
Nha2-RA 1..1755 239..1993 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:09:16 Download gff for GH07323.complete
Subject Subject Range Query Range Percent Splice Strand
Nha2-RA 1..1755 239..1993 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:45:19 Download gff for GH07323.complete
Subject Subject Range Query Range Percent Splice Strand
Nha2-RB 278..2145 124..1993 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:40:11 Download gff for GH07323.complete
Subject Subject Range Query Range Percent Splice Strand
Tango12-RA 1..1755 239..1993 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:52:50 Download gff for GH07323.complete
Subject Subject Range Query Range Percent Splice Strand
Nha2-RB 278..2145 124..1993 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:55:40 Download gff for GH07323.complete
Subject Subject Range Query Range Percent Splice Strand
Nha2-RA 38..2162 1..2125 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:09:16 Download gff for GH07323.complete
Subject Subject Range Query Range Percent Splice Strand
Nha2-RA 38..2162 1..2125 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:19 Download gff for GH07323.complete
Subject Subject Range Query Range Percent Splice Strand
Nha2-RA 38..2162 1..2125 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:40:11 Download gff for GH07323.complete
Subject Subject Range Query Range Percent Splice Strand
Tango12-RA 38..2162 1..2125 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:50 Download gff for GH07323.complete
Subject Subject Range Query Range Percent Splice Strand
Nha2-RA 38..2162 1..2125 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:38:46 Download gff for GH07323.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22991137..22991551 135..549 100 <- Minus
3R 22993391..22993524 1..134 100   Minus
3R 22981459..22981845 1739..2125 99 <- Minus
3R 22982593..22982694 1637..1738 100 <- Minus
3R 22983024..22983167 1493..1636 100 <- Minus
3R 22983879..22984067 1304..1492 100 <- Minus
3R 22986113..22986219 1197..1303 100 <- Minus
3R 22986310..22986485 1021..1196 100 <- Minus
3R 22986563..22986745 838..1020 100 <- Minus
3R 22986804..22987091 550..837 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:38:46 Download gff for GH07323.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22991137..22991551 135..549 100 <- Minus
3R 22993391..22993524 1..134 100   Minus
3R 22981459..22981845 1739..2125 99 <- Minus
3R 22982593..22982694 1637..1738 100 <- Minus
3R 22983024..22983167 1493..1636 100 <- Minus
3R 22983879..22984067 1304..1492 100 <- Minus
3R 22986113..22986219 1197..1303 100 <- Minus
3R 22986310..22986485 1021..1196 100 <- Minus
3R 22986563..22986745 838..1020 100 <- Minus
3R 22986804..22987091 550..837 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:38:46 Download gff for GH07323.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22991137..22991551 135..549 100 <- Minus
3R 22993391..22993524 1..134 100   Minus
3R 22981459..22981845 1739..2125 99 <- Minus
3R 22982593..22982694 1637..1738 100 <- Minus
3R 22983024..22983167 1493..1636 100 <- Minus
3R 22983879..22984067 1304..1492 100 <- Minus
3R 22986113..22986219 1197..1303 100 <- Minus
3R 22986310..22986485 1021..1196 100 <- Minus
3R 22986563..22986745 838..1020 100 <- Minus
3R 22986804..22987091 550..837 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:19 Download gff for GH07323.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18808315..18808416 1637..1738 100 <- Minus
arm_3R 18808746..18808889 1493..1636 100 <- Minus
arm_3R 18809601..18809789 1304..1492 100 <- Minus
arm_3R 18811835..18811941 1197..1303 100 <- Minus
arm_3R 18812032..18812207 1021..1196 100 <- Minus
arm_3R 18812285..18812467 838..1020 100 <- Minus
arm_3R 18812526..18812813 550..837 100 <- Minus
arm_3R 18807181..18807567 1739..2125 99 <- Minus
arm_3R 18816859..18817273 135..549 100 <- Minus
arm_3R 18819113..18819246 1..134 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:17:40 Download gff for GH07323.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22726944..22727050 1197..1303 100 <- Minus
3R 22727141..22727316 1021..1196 100 <- Minus
3R 22727394..22727576 838..1020 100 <- Minus
3R 22727635..22727922 550..837 100 <- Minus
3R 22731968..22732382 135..549 100 <- Minus
3R 22734222..22734355 1..134 100   Minus
3R 22722290..22722676 1739..2125 99 <- Minus
3R 22723424..22723525 1637..1738 100 <- Minus
3R 22723855..22723998 1493..1636 100 <- Minus
3R 22724710..22724898 1304..1492 100 <- Minus

GH07323.pep Sequence

Translation from 238 to 1992

> GH07323.pep
MTQGAAPQDSQGDILPTRPLHTKLDIQKIPEDEAGADATQNAATIILTPT
SLNLTNTTTQNVAANNAGNSSTTTSTNTNYGPGSVSGYPTPNATPGDEYK
GPKWWLYIRSHWVNTSELVALLAIFLGLWAMGWVLLPEYSQPPTVIMRIA
FLFVGAQISGILVTFVHLPDMLGMLFFGVLYANLGLANFEGYQKFELFLR
EMALINIMLLAGLGLDGDAFKRLWFMILRLTLLPTIVEVAAIAGLANLTL
SMPWLWGIALGLVITAVSPNVVVTVMLKLKEDRLGLNSGIHTLIYAMTTC
NDVVAIFMFGVIISVIFSTTSLTQQVLQGPIGIGIGLVFGYLYGSMLQYL
PSRNATYANGLRFVLTILGGTIAVMGSRVIGYTSAGALGCVTTAFIARIG
WRREETRLTPQQLQAQQIASVPKRLDLMWKFLKPVSFALIGKEINFNVLQ
GHVIGYGALLVLVGSLFRLAFAYLSTYGGNLSRKERAYITISGFPKATVQ
AALGPVALDMARAASVASPEQLALAGNLLIISVLAIIFTAPLGAILMLRL
APYWLKHGDAVEAVDSPTTPIAPTLGSTNSSKGT*

GH07323.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18278-PA 713 GF18278-PA 128..708 1..581 2298 79.6 Plus
Dana\GF14475-PA 703 GF14475-PA 211..633 116..547 625 32.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12474-PA 716 GG12474-PA 132..716 1..584 2659 92.2 Plus
Dere\GG23576-PA 708 GG23576-PA 216..638 116..547 635 33 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18256-PA 606 GH18256-PA 17..594 16..580 2018 73.8 Plus
Dgri\GH13167-PA 689 GH13167-PA 215..622 131..547 589 32.1 Plus
Dgri\GH13169-PA 687 GH13169-PA 198..637 116..564 515 30.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
Nha2-PB 714 CG43442-PB 131..714 1..584 2966 100 Plus
Nha2-PA 584 CG43442-PA 1..584 1..584 2966 100 Plus
Nha1-PB 708 CG10806-PB 216..638 116..547 661 32.8 Plus
Nha1-PA 715 CG10806-PA 223..645 116..547 661 32.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10773-PA 702 GI10773-PA 131..701 16..582 2011 70.9 Plus
Dmoj\GI17747-PA 688 GI17747-PA 211..618 131..547 609 32.6 Plus
Dmoj\GI17748-PA 649 GI17748-PA 160..587 116..552 595 32 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27363-PA 594 GL27363-PA 12..587 6..573 2370 81.3 Plus
Dper\GL25608-PA 729 GL25608-PA 237..659 116..547 630 33 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15967-PA 588 GA15967-PA 12..581 6..573 2377 82.3 Plus
Dpse\GA10571-PA 729 GA10571-PA 237..659 116..547 630 33 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13782-PA 708 GM13782-PA 216..638 116..547 632 32.6 Plus
Dsec\GM23606-PA 224 GM23606-PA 71..224 412..584 418 60.7 Plus
Dsec\GM23606-PA 224 GM23606-PA 1..70 1..70 359 98.6 Plus
Dsec\GM23606-PA 224 GM23606-PA 106..140 321..355 186 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18419-PA 781 GD18419-PA 1..266 1..266 1264 93 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14370-PA 592 GJ14370-PA 11..587 16..583 2101 73.5 Plus
Dvir\GJ17572-PA 689 GJ17572-PA 212..619 131..547 612 32.4 Plus
Dvir\GJ17573-PA 690 GJ17573-PA 199..629 116..555 582 31.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11613-PA 701 GK11613-PA 150..699 19..582 2302 82.3 Plus
Dwil\GK24783-PA 686 GK24783-PA 194..616 116..547 623 32.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23998-PA 726 GE23998-PA 132..721 1..582 2775 94.3 Plus
Dyak\GE18398-PA 708 GE18398-PA 216..638 116..547 646 33.5 Plus

GH07323.hyp Sequence

Translation from 238 to 1992

> GH07323.hyp
MTQGAAPQDSQGDILPTRPLHTKLDIQKIPEDEAGADATQNAATIILTPT
SLNLTNTTTQNVAANNAGNSSTTTSTNTNYGPGSVSGYPTPNATPGDEYK
GPKWWLYIRSHWVNTSELVALLAIFLGLWAMGWVLLPEYSQPPTVIMRIA
FLFVGAQISGILVTFVHLPDMLGMLFFGVLYANLGLANFEGYQKFELFLR
EMALINIMLLAGLGLDGDAFKRLWFMILRLTLLPTIVEVAAIAGLANLTL
SMPWLWGIALGLVITAVSPNVVVTVMLKLKEDRLGLNSGIHTLIYAMTTC
NDVVAIFMFGVIISVIFSTTSLTQQVLQGPIGIGIGLVFGYLYGSMLQYL
PSRNATYANGLRFVLTILGGTIAVMGSRVIGYTSAGALGCVTTAFIARIG
WRREETRLTPQQLQAQQIASVPKRLDLMWKFLKPVSFALIGKEINFNVLQ
GHVIGYGALLVLVGSLFRLAFAYLSTYGGNLSRKERAYITISGFPKATVQ
AALGPVALDMARAASVASPEQLALAGNLLIISVLAIIFTAPLGAILMLRL
APYWLKHGDAVEAVDSPTTPIAPTLGSTNSSKGT*

GH07323.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Nha2-PB 714 CG43442-PB 131..714 1..584 2966 100 Plus
Nha2-PA 584 CG43442-PA 1..584 1..584 2966 100 Plus
Nha1-PB 708 CG10806-PB 216..638 116..547 661 32.8 Plus
Nha1-PA 715 CG10806-PA 223..645 116..547 661 32.8 Plus