Clone GH07340 Report

Search the DGRC for GH07340

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:73
Well:40
Vector:pOT2
Associated Gene/TranscriptCG7556-RA
Protein status:GH07340.pep: gold
Preliminary Size:2200
Sequenced Size:1995

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7556 2001-01-01 Release 2 assignment
CG7556 2002-06-07 Blastp of sequenced clone
CG7556 2003-01-01 Sim4 clustering to Release 3
CG7556 2008-04-29 Release 5.5 accounting
CG7556 2008-08-15 Release 5.9 accounting
CG7556 2008-12-18 5.12 accounting

Clone Sequence Records

GH07340.complete Sequence

1995 bp (1995 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119483

> GH07340.complete
TTTGCTTGCGTGTGTGTGTATTTGTGGTGCGTGCGTGGGTCTGGCGCATT
AAATTTGGATTTTACTCCGATTTGGACCTGACCTGGATTCGGAACTCGGA
CCACGATGATGATGCGACCGGAGCTGACGCTGGCCGGCCTCCTGCTGCTC
TGCGCCACTGGCGCCAGCGCCTGGCACTCGGAGGAACTGGAGATCTTTGA
CTTGGTCGAGGAGGTAAACCGCAACTTCTACGAGTTCATGGGCATCAACC
AAACGGCAACGGGCGCCGAGGTGAAGCGCGCCTTCCGCACCCTGTCCATT
GTCCTGCATCCGGACAAGAATCCGGCCGAGGATGCCAACATCCAGTTCCG
CAACCTCGTTTCCATCTACGAGGTTCTCAAAGATCCGTCGCGCCGAGAGA
AGTACGACCGGGTACTGAAGGAGGGCATGCCCAACTGGAAGTCTGCCCTC
TACTATTACCGACGTATGCGCAAGATCGGGCTCTATGAGGGCGCCTTTAT
CCTCTTCCTGATAACCACCGTGGGCCAGTATCTATTCGCCTGGGCGGCCT
ACCTCGAGAAGAAGTACACCGCCGAACAGGTCTTTGGCACCAAGCTGAAG
AAGCTGCAGAAGAAGAACAAGAACATCGACATGGACGTGATCCTTAGCGA
GATACCGATGCCCTCGCTACTCAACACCCTGCCCATCCAGATCCCCTTGG
CCCTGTGGAACCTGCCGCGCACCATCAAGAACGGATTCAGCAAGGCCAAC
GAGCTAAAGGAACTCGCCCTGGAGAAGCGCAGGCAGGAACTGGAGGCCGT
CCGTCGTCAGGAGGAACTGGAACGGGAGGCCGAGGAGCAGGCGCGCCTTC
GCAAGGAGCACAAGGAGAATCTGCGGAAGCGCAAGCAGAACAGCAAGGCT
CCAGAGAAGACCGAGGAAGAATTGCGCGGCTATTCGCAGATTCAGACTCG
CGAATTGACAGATGACGATGCAGTTCGTCCAGCTTCCCAGAAGAGCACGG
TGAGCGGCGGCTTCTGGACTGACGAGGATCTTACCGAGCTGATTCGCTTG
GTAAAAAAGTATCCTGGCGGAGCTGGCAGCCGCTGGAACACTATCGCCGA
GTCGATGAACCGCAGCGTTCAGGAGGTGACCTTTATGGCGGCCAAGATGA
AGGAGAATGGCTACCGCATTCCCGGCCAAACTGACAGCGTGGCCGAGGCT
CTCGTCCAGGAGTCCCAGCAGGCGCAGCGTAAGGAAAAAGTGAAGAAGGC
AGCCGCAAATGCAGGAGCTTCAGCCGAGAAGAGCATGCTAATTCCGGAGA
CCAACTGGACGCAAGAGCAGCAGCGCGCCCTGGAGGCGGCGATAGTCAAG
TACCGGAAGACGGCCGGCGGAGACCGTTGGCAGAAGATCGCCAACAGTGT
GCCGGAGAAGACCAAGGAGGAGTGCCTGGTGCGCTACAAGTATCTCTGCG
AGCTGGTCAAGACGCAGAAGCGGGCCGAGGAGGAGGCCAACGAGCCGGAC
GAGGATGCGGCCGCCATCGAGGAAGAGCTCCCCGAGGAGGAGCCCCTTGC
GCCGCCAGAACCGGAAGTGGCGCCAGCCGCCAAGAAGCTCAGCAAGCGGG
AGCAGCGTCGCCGTAAGCGGGACTTATCCAGCGGCGAGGACTCGGACGAT
GCATATCAGTACGAGATCAGTTAGTCGGAAACCCGGCTCCCGCTCTGTCC
TCCTGCTGCGGCATCTCCTCGCGTGGCTCACAACTAGATGTAATTGAATT
TTTTTATACTTTGCATTAAAGACTCTCTGGCATAGCATTTTGGACCTTGC
CAATCCTAATCCGCGGCCCGATCCTCTGCCCCTTCCCTGACCTTCTGTTT
CCATCACCGTGTGTAGCGCTTATCTTATGTTTTGTACATAATTTTATATT
GTAAACATCTAAATGTCGATTAATTCCTTTGCTAAGTAAACGAAATGTAA
GAGGAAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH07340.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7556.a 3019 CG7556.a 172..2132 1..1961 9790 99.9 Plus
CG7556.b 2637 CG7556.b 172..2132 1..1961 9790 99.9 Plus
CG7556-RA 2351 CG7556-RA 172..2132 1..1961 9790 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19065881..19066845 1959..992 4715 99.4 Minus
chrX 22417052 chrX 19067876..19068668 793..1 3860 99.1 Minus
chrX 22417052 chrX 19066925..19067132 993..786 1025 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:36:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19176995..19177964 1961..992 4835 99.9 Minus
X 23542271 X 19178992..19179784 793..1 3935 99.7 Minus
X 23542271 X 19178040..19178247 993..786 1040 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19185093..19186062 1961..992 4835 99.8 Minus
X 23527363 X 19187090..19187882 793..1 3935 99.7 Minus
X 23527363 X 19186138..19186345 993..786 1040 100 Minus
Blast to na_te.dros performed 2019-03-16 17:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 10324..10418 1573..1666 148 63.2 Plus

GH07340.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:30:15 Download gff for GH07340.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19066925..19067132 786..993 99 <- Minus
chrX 19065881..19066843 994..1959 99 <- Minus
chrX 19067884..19068668 1..785 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:23:08 Download gff for GH07340.complete
Subject Subject Range Query Range Percent Splice Strand
CG7556-RA 1..1569 106..1674 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:27:41 Download gff for GH07340.complete
Subject Subject Range Query Range Percent Splice Strand
CG7556-RA 1..1569 106..1674 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:56:41 Download gff for GH07340.complete
Subject Subject Range Query Range Percent Splice Strand
CG7556-RA 1..1569 106..1674 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:18:13 Download gff for GH07340.complete
Subject Subject Range Query Range Percent Splice Strand
CG7556-RA 1..1569 106..1674 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:00:00 Download gff for GH07340.complete
Subject Subject Range Query Range Percent Splice Strand
CG7556-RA 1..1569 106..1674 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:56:27 Download gff for GH07340.complete
Subject Subject Range Query Range Percent Splice Strand
CG7556-RA 172..2130 1..1959 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:27:41 Download gff for GH07340.complete
Subject Subject Range Query Range Percent Splice Strand
CG7556-RA 172..2130 1..1959 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:56:41 Download gff for GH07340.complete
Subject Subject Range Query Range Percent Splice Strand
CG7556-RA 47..2005 1..1959 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:18:13 Download gff for GH07340.complete
Subject Subject Range Query Range Percent Splice Strand
CG7556-RA 172..2130 1..1959 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:00:00 Download gff for GH07340.complete
Subject Subject Range Query Range Percent Splice Strand
CG7556-RA 47..2005 1..1959 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:30:15 Download gff for GH07340.complete
Subject Subject Range Query Range Percent Splice Strand
X 19176997..19177962 994..1959 99 <- Minus
X 19178040..19178247 786..993 100 <- Minus
X 19179000..19179784 1..785 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:30:15 Download gff for GH07340.complete
Subject Subject Range Query Range Percent Splice Strand
X 19176997..19177962 994..1959 99 <- Minus
X 19178040..19178247 786..993 100 <- Minus
X 19179000..19179784 1..785 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:30:15 Download gff for GH07340.complete
Subject Subject Range Query Range Percent Splice Strand
X 19176997..19177962 994..1959 99 <- Minus
X 19178040..19178247 786..993 100 <- Minus
X 19179000..19179784 1..785 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:56:41 Download gff for GH07340.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19073033..19073817 1..785 100   Minus
arm_X 19071030..19071995 994..1959 99 <- Minus
arm_X 19072073..19072280 786..993 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:51:33 Download gff for GH07340.complete
Subject Subject Range Query Range Percent Splice Strand
X 19185095..19186060 994..1959 99 <- Minus
X 19186138..19186345 786..993 100 <- Minus
X 19187098..19187882 1..785 100   Minus

GH07340.pep Sequence

Translation from 105 to 1673

> GH07340.pep
MMMRPELTLAGLLLLCATGASAWHSEELEIFDLVEEVNRNFYEFMGINQT
ATGAEVKRAFRTLSIVLHPDKNPAEDANIQFRNLVSIYEVLKDPSRREKY
DRVLKEGMPNWKSALYYYRRMRKIGLYEGAFILFLITTVGQYLFAWAAYL
EKKYTAEQVFGTKLKKLQKKNKNIDMDVILSEIPMPSLLNTLPIQIPLAL
WNLPRTIKNGFSKANELKELALEKRRQELEAVRRQEELEREAEEQARLRK
EHKENLRKRKQNSKAPEKTEEELRGYSQIQTRELTDDDAVRPASQKSTVS
GGFWTDEDLTELIRLVKKYPGGAGSRWNTIAESMNRSVQEVTFMAAKMKE
NGYRIPGQTDSVAEALVQESQQAQRKEKVKKAAANAGASAEKSMLIPETN
WTQEQQRALEAAIVKYRKTAGGDRWQKIANSVPEKTKEECLVRYKYLCEL
VKTQKRAEEEANEPDEDAAAIEEELPEEEPLAPPEPEVAPAAKKLSKREQ
RRRKRDLSSGEDSDDAYQYEIS*

GH07340.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16003-PA 534 GF16003-PA 9..534 9..522 2257 89 Plus
Dana\GF23490-PA 130 GF23490-PA 1..108 37..149 159 31.4 Plus
Dana\GF15175-PA 346 GF15175-PA 3..72 39..108 158 41.4 Plus
Dana\GF19555-PA 334 GF19555-PA 1..72 37..108 153 38.9 Plus
Dana\GF10450-PA 354 GF10450-PA 1..78 37..110 151 37.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18074-PA 521 GG18074-PA 1..521 2..522 2671 96.9 Plus
Dere\GG13187-PA 127 GG13187-PA 1..106 37..149 166 31 Plus
Dere\GG24779-PA 350 GG24779-PA 1..72 37..108 161 40.3 Plus
Dere\GG10228-PA 389 GG10228-PA 3..85 38..118 155 40 Plus
Dere\DnaJ-1-PA 351 GG14117-PA 1..72 37..108 151 36.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17711-PA 530 GH17711-PA 24..530 21..522 2113 85.1 Plus
Dgri\GH11404-PA 346 GH11404-PA 1..72 37..108 163 41.7 Plus
Dgri\GH16902-PA 127 GH16902-PA 1..106 37..149 153 28.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7556-PB 522 CG7556-PB 1..522 1..522 2661 100 Plus
CG7556-PA 522 CG7556-PA 1..522 1..522 2661 100 Plus
CG5001-PC 346 CG5001-PC 1..72 37..108 169 40.3 Plus
CG5001-PD 350 CG5001-PD 1..72 37..108 169 40.3 Plus
CG5001-PA 350 CG5001-PA 1..72 37..108 169 40.3 Plus
CG5001-PB 350 CG5001-PB 1..72 37..108 169 40.3 Plus
mrj-PA 259 CG8448-PA 3..73 40..108 159 42.3 Plus
mrj-PC 259 CG8448-PC 3..73 40..108 159 42.3 Plus
mrj-PB 259 CG8448-PB 3..73 40..108 159 42.3 Plus
mrj-PD 259 CG8448-PD 3..73 40..108 159 42.3 Plus
shv-PA 354 CG4164-PA 16..99 33..108 158 44 Plus
CG7130-PA 128 CG7130-PA 1..107 37..149 153 31 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15454-PA 519 GI15454-PA 20..519 16..522 2155 84.3 Plus
Dmoj\GI11521-PA 505 GI11521-PA 1..137 37..192 191 28.8 Plus
Dmoj\GI14539-PA 347 GI14539-PA 1..72 37..108 159 40.3 Plus
Dmoj\GI20061-PA 339 GI20061-PA 55..140 24..107 159 40.7 Plus
Dmoj\GI13174-PA 352 GI13174-PA 1..72 37..108 151 36.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13020-PA 538 GL13020-PA 23..538 20..522 2039 82.8 Plus
Dper\GL25452-PA 129 GL25452-PA 1..124 37..177 167 27.7 Plus
Dper\GL15626-PA 318 GL15626-PA 1..78 37..114 162 38.5 Plus
Dper\GL10957-PA 341 GL10957-PA 78..162 24..108 152 40.2 Plus
Dper\GL24772-PA 392 GL24772-PA 3..81 38..114 152 42 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20437-PA 538 GA20437-PA 23..538 20..522 2019 81.6 Plus
Dpse\GA18584-PA 346 GA18584-PA 1..72 37..108 160 40.3 Plus
Dpse\GA15683-PA 385 GA15683-PA 113..197 24..108 153 40.2 Plus
Dpse\GA22062-PA 392 GA22062-PA 3..81 38..114 152 42 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22763-PA 521 GM22763-PA 1..521 2..522 2720 99 Plus
Dsec\GM16806-PA 350 GM16806-PA 1..72 37..108 163 40.3 Plus
Dsec\GM22099-PA 128 GM22099-PA 1..107 37..149 162 31.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15599-PA 226 GD15599-PA 1..226 2..227 1202 99.1 Plus
Dsim\GD23083-PA 346 GD23083-PA 1..72 37..108 164 40.3 Plus
Dsim\GD12075-PA 128 GD12075-PA 1..107 37..149 149 31.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19169-PA 529 GJ19169-PA 19..529 15..522 2186 82.2 Plus
Dvir\GJ16971-PA 347 GJ16971-PA 1..72 37..108 159 38.9 Plus
Dvir\GJ14959-PA 667 GJ14959-PA 374..485 16..126 154 34.5 Plus
Dvir\GJ11775-PA 124 GJ11775-PA 1..108 37..154 148 28 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25169-PA 524 GK25169-PA 17..524 15..522 2107 84.1 Plus
Dwil\GK15183-PA 346 GK15183-PA 1..72 37..108 159 40.3 Plus
Dwil\GK19767-PA 330 GK19767-PA 1..81 37..113 157 40.7 Plus
Dwil\GK19161-PA 125 GK19161-PA 1..72 37..108 155 36.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15471-PA 521 GE15471-PA 1..521 2..522 2710 98.5 Plus
Dyak\GE22992-PA 127 GE22992-PA 1..106 37..149 164 31 Plus
Dyak\GE19512-PA 127 GE19512-PA 1..106 37..149 164 31 Plus
Dyak\GE17451-PA 350 GE17451-PA 1..72 37..108 161 40.3 Plus
Dyak\GE11908-PA 389 GE11908-PA 3..85 38..118 156 40 Plus

GH07340.hyp Sequence

Translation from 105 to 1673

> GH07340.hyp
MMMRPELTLAGLLLLCATGASAWHSEELEIFDLVEEVNRNFYEFMGINQT
ATGAEVKRAFRTLSIVLHPDKNPAEDANIQFRNLVSIYEVLKDPSRREKY
DRVLKEGMPNWKSALYYYRRMRKIGLYEGAFILFLITTVGQYLFAWAAYL
EKKYTAEQVFGTKLKKLQKKNKNIDMDVILSEIPMPSLLNTLPIQIPLAL
WNLPRTIKNGFSKANELKELALEKRRQELEAVRRQEELEREAEEQARLRK
EHKENLRKRKQNSKAPEKTEEELRGYSQIQTRELTDDDAVRPASQKSTVS
GGFWTDEDLTELIRLVKKYPGGAGSRWNTIAESMNRSVQEVTFMAAKMKE
NGYRIPGQTDSVAEALVQESQQAQRKEKVKKAAANAGASAEKSMLIPETN
WTQEQQRALEAAIVKYRKTAGGDRWQKIANSVPEKTKEECLVRYKYLCEL
VKTQKRAEEEANEPDEDAAAIEEELPEEEPLAPPEPEVAPAAKKLSKREQ
RRRKRDLSSGEDSDDAYQYEIS*

GH07340.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7556-PB 522 CG7556-PB 1..522 1..522 2661 100 Plus
CG7556-PA 522 CG7556-PA 1..522 1..522 2661 100 Plus
CG5001-PC 346 CG5001-PC 1..72 37..108 169 40.3 Plus
CG5001-PD 350 CG5001-PD 1..72 37..108 169 40.3 Plus
CG5001-PA 350 CG5001-PA 1..72 37..108 169 40.3 Plus