Clone GH07444 Report

Search the DGRC for GH07444

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:74
Well:44
Vector:pOT2
Associated Gene/TranscriptCG1309-RA
Protein status:GH07444.pep: gold
Preliminary Size:2200
Sequenced Size:1850

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1309 2001-01-01 Release 2 assignment
CG1309 2001-07-04 Blastp of sequenced clone
CG1309 2003-01-01 Sim4 clustering to Release 3
CG1309 2008-04-29 Release 5.5 accounting
CG1309 2008-08-15 Release 5.9 accounting
CG1309 2008-12-18 5.12 accounting

Clone Sequence Records

GH07444.complete Sequence

1850 bp (1850 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047560

> GH07444.complete
CTGGAACAGCTTTCACATCATTTGCAACAAAATAAAATAGAGAAAATTAA
ATATATCCAGACATACCGACTACGATCCGATCCAAGATGAGTTTCCTAAA
TTACGTGTTTGGCCCCAACCTCTACATGGAATACCGCGGTGTGCCGGAGC
CGCAGCGCAAGATGTACGAGGCAGGTGCCGTGGAAAAGTTCGGGGAGCAG
ATTCTATCGACGCTATCGGTTATGTGGTCCGTGGGCTATTATACTTCTCC
GCTGCTCGTCACATTCCTATACCGACGCGGCTACCTGGTGACCGATTCCA
TACCGACGCTGGCCAAGATCACCACCAGCGTGGGCCTCATCGTCATCCTA
TCGCTGGTGATGCGCGGCCTGGGGCGCAAGCAATCGCGCTCCTACTCCAA
CATGATTAAGGCCCTCGTCCGAGCAAAGTCCTCCAAGGCACCAGGAGATG
CCAACAGCGAGCTGCGTCGCTTCGACATCGAGTTCAACGCTTGGCCGGTG
GACTTTGATGTGAAAGCTCTAACCGGTGATACCAAAAAGCCGGTGGTTAC
GGCTAGAAGGCGGGAGCCCATCCAGCTGGCGACACTGCCCTGTGAGGCCA
TCGCCTACCTGGCCATAAACACCTTTGGGCTCTCCATGATCTATCCGGGT
TCGGTCAAACTACTCCAGAAACTTATGAGACCCATGCTGATCTCCGGACG
CGCCAAGCTCATCGAGGATGACAACGGCATCCGCTACAAGGTTAAGACCA
TTGACTCGAACGAAATCGATACGTTGTTCATTGACAATCGCCCAAACAAC
GTGGGAAATGGCAAGACTCTAGTCATTTGCTCCGAGGGCAATGCCGGTTT
TTATGAAGTGGGCATTATGGCCACCCCAGTGGCCTTAAAGTATTCCGTTT
TGGGCTGGAATCATCCCGGATTTGCCGGCAGCACAGGCACTCCTCATCCC
CACCAGGACAAGAACGCCATCGATGCCGTGGTGCAGTTTGCCATCAACAA
TCTTAGGTTCCCCGTAGAGGATATAATTTTGTATGGCTGGAGCATTGGTG
GCTTTAGTACACTATACGCTGCCTCTGTGTATCCGGATGTCAAGGGAGTG
GTACTAGACGCCACCTTCGACGATGTGCTCTACTTGGCCGTTCCTCGCAT
GCCAGCTGCACTGGCGGGCATTGTCAAGGTAGCCATTCGAAACTACTGTA
ATTTGAACAATGCCGAACTGGCCAACGAGTTCAATGGACCCATATCCTTT
ATTCGCCGCACTGAGGATGAGATCATTGCAGAGGACAACCACATTGACAC
AAACCGCGGAAATTTCTTGGTCTTGTCAGTGCTCAAGCACCGGTATCCCA
ACATTTTTGGGGCTTCCCAGTTGAATAAGGCCAAGGGGCTGCTGTCTAAG
CCCCTGGAACCATACAGTATCCCCGTCGCCGACGAGAAGCTGTGCATGTC
GCGCCTGATCACCTACGCCTCTGACGAGGGCAAGTCATTCCCCATGAACA
TTGGAGCAGATTACTCGGAGGAGGTGCGCAATCTGATGGCTGTGTTCTTG
CTGCGCAAGCATTTACGTGACTATAACTCGACGCACTGCACCCAGCTGCC
CGGGGAGTTCTTTACCATGCCGTGGGACATACCCACTGAGCAGGGATTTG
TGTTCACCTAAGCTCATTCCGCAGGTGATCCACGGCCGTATGCTTAGATT
TAGTAAAATGGTTTTTAGTAATTTTTGCCTTCTGACTGCTTATTAAATTA
TTCTAACTGGGAACAGCCGGGTAGCTGGTGTCTTCTGAACTGGTGTGAAA
TTATATACAAAATAAATGTCACAAGCTAAACTAAAAAAAAAAAAAAAAAA

GH07444.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1309-RA 1922 CG1309-RA 85..1917 1..1833 9165 100 Plus
CG11586-RA 1151 CG11586-RA 798..1081 1833..1550 1420 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4259754..4260358 679..1283 3025 100 Plus
chr3L 24539361 chr3L 4259129..4259443 212..526 1575 100 Plus
chr3L 24539361 chr3L 4260747..4261029 1550..1832 1415 100 Plus
chr3L 24539361 chr3L 4260424..4260691 1283..1550 1340 100 Plus
chr3L 24539361 chr3L 4258843..4259054 1..212 1060 100 Plus
chr3L 24539361 chr3L 4259494..4259647 526..679 770 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:36:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4260368..4260972 679..1283 3025 100 Plus
3L 28110227 3L 4259743..4260057 212..526 1575 100 Plus
3L 28110227 3L 4261361..4261644 1550..1833 1420 100 Plus
3L 28110227 3L 4261038..4261305 1283..1550 1340 100 Plus
3L 28110227 3L 4259457..4259668 1..212 1060 100 Plus
3L 28110227 3L 4260108..4260261 526..679 770 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4260368..4260972 679..1283 3025 100 Plus
3L 28103327 3L 4259743..4260057 212..526 1575 100 Plus
3L 28103327 3L 4261361..4261644 1550..1833 1420 100 Plus
3L 28103327 3L 4261038..4261305 1283..1550 1340 100 Plus
3L 28103327 3L 4259457..4259668 1..212 1060 100 Plus
3L 28103327 3L 4260108..4260261 526..679 770 100 Plus
Blast to na_te.dros performed on 2019-03-16 02:28:08 has no hits.

GH07444.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:29:07 Download gff for GH07444.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4260424..4260691 1283..1550 100 -> Plus
chr3L 4260748..4261029 1551..1832 100   Plus
chr3L 4258843..4259054 1..212 100 -> Plus
chr3L 4259130..4259443 213..526 100 -> Plus
chr3L 4259495..4259646 527..678 100 -> Plus
chr3L 4259754..4260357 679..1282 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:23:28 Download gff for GH07444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 1..1575 87..1661 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:29:17 Download gff for GH07444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 1..1575 87..1661 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:13:16 Download gff for GH07444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 1..1575 87..1661 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:02:42 Download gff for GH07444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 1..1575 87..1661 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:11:48 Download gff for GH07444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 1..1575 87..1661 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:29:40 Download gff for GH07444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 39..1870 1..1832 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:29:17 Download gff for GH07444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 39..1870 1..1832 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:13:16 Download gff for GH07444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 28..1859 1..1832 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:02:42 Download gff for GH07444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 39..1870 1..1832 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:11:48 Download gff for GH07444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 28..1859 1..1832 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:29:07 Download gff for GH07444.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4261038..4261305 1283..1550 100 -> Plus
3L 4259457..4259668 1..212 100 -> Plus
3L 4259744..4260057 213..526 100 -> Plus
3L 4260109..4260260 527..678 100 -> Plus
3L 4260368..4260971 679..1282 100 -> Plus
3L 4261362..4261643 1551..1832 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:29:07 Download gff for GH07444.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4261038..4261305 1283..1550 100 -> Plus
3L 4259457..4259668 1..212 100 -> Plus
3L 4259744..4260057 213..526 100 -> Plus
3L 4260109..4260260 527..678 100 -> Plus
3L 4260368..4260971 679..1282 100 -> Plus
3L 4261362..4261643 1551..1832 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:29:07 Download gff for GH07444.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4261038..4261305 1283..1550 100 -> Plus
3L 4259457..4259668 1..212 100 -> Plus
3L 4259744..4260057 213..526 100 -> Plus
3L 4260109..4260260 527..678 100 -> Plus
3L 4260368..4260971 679..1282 100 -> Plus
3L 4261362..4261643 1551..1832 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:13:16 Download gff for GH07444.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4259457..4259668 1..212 100 -> Plus
arm_3L 4259744..4260057 213..526 100 -> Plus
arm_3L 4260109..4260260 527..678 100 -> Plus
arm_3L 4260368..4260971 679..1282 100 -> Plus
arm_3L 4261038..4261305 1283..1550 100 -> Plus
arm_3L 4261362..4261643 1551..1832 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:40:42 Download gff for GH07444.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4259457..4259668 1..212 100 -> Plus
3L 4259744..4260057 213..526 100 -> Plus
3L 4260109..4260260 527..678 100 -> Plus
3L 4260368..4260971 679..1282 100 -> Plus
3L 4261038..4261305 1283..1550 100 -> Plus
3L 4261362..4261643 1551..1832 100   Plus

GH07444.pep Sequence

Translation from 86 to 1660

> GH07444.pep
MSFLNYVFGPNLYMEYRGVPEPQRKMYEAGAVEKFGEQILSTLSVMWSVG
YYTSPLLVTFLYRRGYLVTDSIPTLAKITTSVGLIVILSLVMRGLGRKQS
RSYSNMIKALVRAKSSKAPGDANSELRRFDIEFNAWPVDFDVKALTGDTK
KPVVTARRREPIQLATLPCEAIAYLAINTFGLSMIYPGSVKLLQKLMRPM
LISGRAKLIEDDNGIRYKVKTIDSNEIDTLFIDNRPNNVGNGKTLVICSE
GNAGFYEVGIMATPVALKYSVLGWNHPGFAGSTGTPHPHQDKNAIDAVVQ
FAINNLRFPVEDIILYGWSIGGFSTLYAASVYPDVKGVVLDATFDDVLYL
AVPRMPAALAGIVKVAIRNYCNLNNAELANEFNGPISFIRRTEDEIIAED
NHIDTNRGNFLVLSVLKHRYPNIFGASQLNKAKGLLSKPLEPYSIPVADE
KLCMSRLITYASDEGKSFPMNIGADYSEEVRNLMAVFLLRKHLRDYNSTH
CTQLPGEFFTMPWDIPTEQGFVFT*

GH07444.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25056-PA 524 GF25056-PA 1..524 1..524 2570 90.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15211-PA 524 GG15211-PA 1..524 1..524 2708 96.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15936-PA 520 GH15936-PA 1..520 1..524 2240 78.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1309-PA 524 CG1309-PA 1..524 1..524 2718 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16588-PA 520 GI16588-PA 1..520 1..524 2262 78.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12842-PA 524 GL12842-PA 1..524 1..524 2445 85.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12040-PA 524 GA12040-PA 1..524 1..524 2445 85.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14640-PA 524 GM14640-PA 1..524 1..524 2763 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13828-PA 524 GD13828-PA 1..524 1..524 2761 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12840-PA 520 GJ12840-PA 1..520 1..524 2280 80 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10553-PA 525 GK10553-PA 3..525 2..524 2352 82.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21430-PA 524 GE21430-PA 1..524 1..524 2727 97.1 Plus

GH07444.hyp Sequence

Translation from 86 to 1660

> GH07444.hyp
MSFLNYVFGPNLYMEYRGVPEPQRKMYEAGAVEKFGEQILSTLSVMWSVG
YYTSPLLVTFLYRRGYLVTDSIPTLAKITTSVGLIVILSLVMRGLGRKQS
RSYSNMIKALVRAKSSKAPGDANSELRRFDIEFNAWPVDFDVKALTGDTK
KPVVTARRREPIQLATLPCEAIAYLAINTFGLSMIYPGSVKLLQKLMRPM
LISGRAKLIEDDNGIRYKVKTIDSNEIDTLFIDNRPNNVGNGKTLVICSE
GNAGFYEVGIMATPVALKYSVLGWNHPGFAGSTGTPHPHQDKNAIDAVVQ
FAINNLRFPVEDIILYGWSIGGFSTLYAASVYPDVKGVVLDATFDDVLYL
AVPRMPAALAGIVKVAIRNYCNLNNAELANEFNGPISFIRRTEDEIIAED
NHIDTNRGNFLVLSVLKHRYPNIFGASQLNKAKGLLSKPLEPYSIPVADE
KLCMSRLITYASDEGKSFPMNIGADYSEEVRNLMAVFLLRKHLRDYNSTH
CTQLPGEFFTMPWDIPTEQGFVFT*

GH07444.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1309-PA 524 CG1309-PA 1..524 1..524 2718 100 Plus