Clone GH07456 Report

Search the DGRC for GH07456

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:74
Well:56
Vector:pOT2
Associated Gene/TranscriptRpII33-RA
Protein status:GH07456.pep: gold
Preliminary Size:1300
Sequenced Size:950

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7885 2001-01-01 Release 2 assignment
CG7885 2001-10-10 Blastp of sequenced clone
CG7885 2003-01-01 Sim4 clustering to Release 3
RpII33 2008-04-29 Release 5.5 accounting
RpII33 2008-08-15 Release 5.9 accounting
RpII33 2008-12-18 5.12 accounting

Clone Sequence Records

GH07456.complete Sequence

950 bp (950 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060644

> GH07456.complete
CGGGTTATTTTTTTCGTGACCCTTTAATTTCATCAAAACAAAACCGCAAT
GCCGTACGCCAACCAGCCGTCCGTGCAGATAACCGAGCTGACGGACGACA
ACGTAAAGTTCGTCCTGGAGGACACGGAACTGAGTGTGGCCAACAGCCTG
CGGCGAGTGTTCATCGCGGAGACGCCGACGCTGGCCATCGACTGGGTGCA
ACTGGAAGCCAACTCTACGGTGCTCTCGGATGAGTTTTTAGCCCACCGGA
TCGGTCTGATACCGCTGATCTCCGACGACGTCGTGGAGCGGCTGCAGTAC
ACGCGTGACTGTATCTGCCTGGACTTCTGCCCCGAATGCAGCGTGGAGTT
CACCCTGGACGTAAAGTGCAGCGAGGAACAGACGCGCCACGTGACCACCG
CCGATCTCAAGTCGAGCAATGCCAAGGTCCTGCCGGTGACGTCCCGCAAC
CAGGGTGAGGAGGACAACGAGTACGGCGAGAGCAACGATGAGATCCTCAT
AATTAAGCTGCGCAAGGGGCAGGAGCTGAAGCTGCGCGCCTACGCCAAGA
AGGGATTTGGCAAGGAGCACGCCAAGTGGAATCCTACCGCAGGCGTGTGC
TTCGAGTATGATCCGGACAACTCCATGCGACACACTCTGTATCCCAAACC
TGATGAGTGGCCAAAGAGCGAGCACACCGAACTGGAGGACGACCAGTACG
AGGCGCCCTACAACTGGGAAGCCAAGCCAAACAAGTTCTTCTTCAACGTC
GAATCCGCCGGTGCCCTTAAGCCTGAGAACATTGTGGTCATGGGTGTGCA
GGTGCTGAAGAACAAGCTGTCAAACCTGCAGACGCAACTCAGCCACGAGT
CCCAAAACGATGCATTGGCCGTTTGATTTACATATAACAAGTTTATTTTA
AGTTTATAAAAGATGTTCCGCCTAATCCTTGAAAAAAAAAAAAAAAAAAA

GH07456.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
RpII33-RA 968 RpII33-RA 38..968 1..931 4655 100 Plus
RpII33.a 1001 RpII33.a 385..958 360..933 2870 100 Plus
RpII33.a 1001 RpII33.a 82..387 1..306 1530 100 Plus
mRpS23-RA 777 mRpS23-RA 718..777 933..874 300 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13832115..13833045 1..931 4655 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:36:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13833376..13834308 1..933 4665 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13833376..13834308 1..933 4665 100 Plus
Blast to na_te.dros performed on 2019-03-16 15:35:15 has no hits.

GH07456.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:36:06 Download gff for GH07456.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13832115..13833045 1..931 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:23:34 Download gff for GH07456.complete
Subject Subject Range Query Range Percent Splice Strand
RpII33-RA 1..828 49..876 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:37:46 Download gff for GH07456.complete
Subject Subject Range Query Range Percent Splice Strand
RpII33-RA 1..828 49..876 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:49:24 Download gff for GH07456.complete
Subject Subject Range Query Range Percent Splice Strand
RpII33-RA 1..828 49..876 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:06:40 Download gff for GH07456.complete
Subject Subject Range Query Range Percent Splice Strand
RpII33-RA 1..828 49..876 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:49:53 Download gff for GH07456.complete
Subject Subject Range Query Range Percent Splice Strand
RpII33-RA 1..828 49..876 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:18:36 Download gff for GH07456.complete
Subject Subject Range Query Range Percent Splice Strand
RpII33-RA 38..968 1..931 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:37:46 Download gff for GH07456.complete
Subject Subject Range Query Range Percent Splice Strand
RpII33-RA 38..968 1..931 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:49:24 Download gff for GH07456.complete
Subject Subject Range Query Range Percent Splice Strand
RpII33-RA 40..970 1..931 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:06:41 Download gff for GH07456.complete
Subject Subject Range Query Range Percent Splice Strand
RpII33-RA 38..968 1..931 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:49:53 Download gff for GH07456.complete
Subject Subject Range Query Range Percent Splice Strand
RpII33-RA 40..970 1..931 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:36:06 Download gff for GH07456.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13833376..13834306 1..931 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:36:06 Download gff for GH07456.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13833376..13834306 1..931 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:36:06 Download gff for GH07456.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13833376..13834306 1..931 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:49:24 Download gff for GH07456.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13833376..13834306 1..931 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:42:42 Download gff for GH07456.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13833376..13834306 1..931 100   Plus

GH07456.pep Sequence

Translation from 48 to 875

> GH07456.pep
MPYANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWV
QLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVE
FTLDVKCSEEQTRHVTTADLKSSNAKVLPVTSRNQGEEDNEYGESNDEIL
IIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLYPK
PDEWPKSEHTELEDDQYEAPYNWEAKPNKFFFNVESAGALKPENIVVMGV
QVLKNKLSNLQTQLSHESQNDALAV*

GH07456.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19667-PA 83 GF19667-PA 1..83 193..275 444 98.8 Plus
Dana\GF19666-PA 125 GF19666-PA 1..85 1..85 443 100 Plus
Dana\GF21532-PA 333 GF21532-PA 37..333 3..267 276 27.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23887-PA 117 GG23887-PA 1..87 1..87 448 100 Plus
Dere\GG23888-PA 83 GG23888-PA 1..83 193..275 444 98.8 Plus
Dere\GG25034-PA 329 GG25034-PA 39..318 9..256 267 28.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11119-PA 275 GH11119-PA 1..275 1..275 1461 98.5 Plus
Dgri\GH11517-PA 333 GH11517-PA 36..322 3..256 270 29.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
RpII33-PA 275 CG7885-PA 1..275 1..275 1445 100 Plus
CG3756-PA 333 CG3756-PA 43..333 9..267 257 27 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12561-PA 275 GI12561-PA 1..275 1..275 1461 98.5 Plus
Dmoj\GI17014-PA 333 GI17014-PA 63..333 29..267 270 28.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21238-PA 275 GL21238-PA 1..275 1..275 1442 97.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20659-PA 275 GA20659-PA 1..275 1..275 1442 97.1 Plus
Dpse\GA17664-PA 333 GA17664-PA 37..322 3..256 263 28.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15286-PA 275 GM15286-PA 1..275 1..275 1468 99.3 Plus
Dsec\GM18508-PA 331 GM18508-PA 66..331 34..267 244 28.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23930-PA 275 GD23930-PA 1..275 1..275 1474 99.6 Plus
Dsim\GD23312-PA 333 GD23312-PA 43..333 9..267 267 28.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18149-PA 275 GJ18149-PA 1..275 1..275 1461 98.5 Plus
Dvir\GJ24400-PA 333 GJ24400-PA 50..333 16..267 279 29.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15011-PA 275 GK15011-PA 1..275 1..275 1457 97.8 Plus
Dwil\GK24584-PA 332 GK24584-PA 36..332 3..267 276 28.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18688-PA 275 GE18688-PA 1..275 1..275 1473 99.6 Plus
Dyak\GE11271-PA 333 GE11271-PA 37..322 3..256 269 28.7 Plus

GH07456.hyp Sequence

Translation from 48 to 875

> GH07456.hyp
MPYANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWV
QLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVE
FTLDVKCSEEQTRHVTTADLKSSNAKVLPVTSRNQGEEDNEYGESNDEIL
IIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLYPK
PDEWPKSEHTELEDDQYEAPYNWEAKPNKFFFNVESAGALKPENIVVMGV
QVLKNKLSNLQTQLSHESQNDALAV*

GH07456.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:28:28
Subject Length Description Subject Range Query Range Score Percent Strand
RpII33-PA 275 CG7885-PA 1..275 1..275 1445 100 Plus
CG3756-PA 333 CG3756-PA 43..333 9..267 257 27 Plus