Clone GH07506 Report

Search the DGRC for GH07506

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:75
Well:6
Vector:pOT2
Associated Gene/TranscriptCG5554-RA
Protein status:GH07506.pep: gold
Preliminary Size:1647
Sequenced Size:1694

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5554 2002-01-01 Sim4 clustering to Release 2
CG5554 2002-05-18 Blastp of sequenced clone
CG5554 2003-01-01 Sim4 clustering to Release 3
CG5554 2008-04-29 Release 5.5 accounting
CG5554 2008-08-15 Release 5.9 accounting
CG5554 2008-12-18 5.12 accounting

Clone Sequence Records

GH07506.complete Sequence

1694 bp (1694 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118750

> GH07506.complete
CTTGATCTAATAAATAAAAAATCGTGTAACGAGCGAATACCGACCGAATC
CCCCTACCGATGATCTAGCGGGGAATAAAGCGGCTTGCCATCTCCGATGG
ATATCGAACCAGCACTTCTGTCAATTTTCCAGCAGGCGTCGCAGTTTCTG
TAACTTTTTGGAACTGACCAAGACGGAAGCTTTAGTTTAATTTAAGAAAC
TGTCGCAGCCGAACGTCACAGGTTTCAGGACACGAATCGGCGGAGCAAAG
CACCAAAACATCACCACATGCATAGCACATCGTACTTTGTGGCCGCGACA
TGCGCGGCGCTGCTTCTGCTGGCGGCGACGGCGCAGTCGACGGCAGCAGC
GCAGTCAGGACTGCAGCCAGGTGGCAAGTTAATCGAGTTGGACGAGGACA
ACTGGCACCTGATGCTCCAGGGCGAATGGATGATCGAGTTCTTTGCTCCA
TGGTGCCCGGCCTGCAAGAACCTGGCTCCCACCTGGGAGCGGTTTGCCCG
CGTGGCCAAGGATGTCCAGGTGCAGGTGGCCAAAATCGACGTGACAACCT
CGCCCTCGCTGAGTGGACGCTTCTTTGTCACCGCCCTCCCCACCATCTAC
CACGTAAAAGATGGCGAGTTCCGGCAGTATCGTGGGGCCCGTGATGGCGA
CGCCCTCCTCTACTTCGTGAAGAAGCAGCAGTGGCAGAGCATCGAACCGC
TGTCCGCCTGGAAGAAGCCCGACACCACCCACATGTCCGTGCTGTCCTAC
TTCTTCAAGCTTTCGCACACTCTGAAGGACTTCAACGGGCGCCTGCAGGA
GGAATACGGACTGCCCACGTGGGGCTCCTACGCCCTCTTCGCCATCGCCA
CCATCTTCGTGGGCGCTGCCCTGGGGCTGCTGCTCGTGTGCCTTGTGGAC
TTTGTCTACCCACCCAAGAAGTCGCAGCGCCAGAGCTTCTCCGAGTCCCA
GGACAATCTGACCGAGGGCCTGGAGGATTTGGCAACCGAGGAGATCGAGG
ATGATGGCGACGCCGAGGAGAACGATGACGAGCAACGCGATAGCGACGAG
GAAGAACAGGAGGACGACGACGAAGAGGAAGAGGACAGCGAGGAGCAGGT
GGGCGATCTGGCCACTAAAGAGAAGGAGGCCGACAGCGAGCCGGAAAAGG
AAGAGAAGCCGGAGCCCAAGCAGGCCGGCGATGCTGCGCCCGAGAAGACG
GAACAGGTGCGCAAGCGCAAGCCTCGCAAAGGCGATTAGGTGCAGCGGGG
TCCCTGCGGATCTTCAGCCTTAGCGATCATCAGAAGCGGCAACAAAAAGA
CTAACACACTGAATCGAGAGGAACACAACCTCTTACCCAAGCATCATTCG
AGCGGACATAATCCGTCTGCTCTGCCTTCGCGCACAAAACCGATTGTTTT
CCCTCCTTCTAATCCTAGCCAGAAAACGGCGCCCCATGTATTTCATAATT
ATGTAAAGCAAAATTGCAATCCATTAAGCGATAGCAAGCGTAACAATAAC
TAAATGTAACTTTAGTCGTATATTTTTACCTTTTGCCAAGCATTTTTGTA
TTTTGTGTTCAACTTGGTTTCCACACAATTCATTTCTCTTAAGCATTTCA
TTTGTAATTGTACTTCAATCGCAAATTGTATTAAATTTTCGTATTACAAA
ATAATAAAAAAAAACATACAATTTAAAAAAAAAAAAAAAAAAAA

GH07506.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5554-RA 1685 CG5554-RA 12..1685 1..1674 8370 100 Plus
CG5554.a 1695 CG5554.a 796..1695 775..1674 4500 100 Plus
CG5554.a 1695 CG5554.a 1..777 1..777 3885 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19732214..19733114 775..1674 4410 99.6 Plus
chr2R 21145070 chr2R 19730981..19731420 1..440 2170 99.5 Plus
chr2R 21145070 chr2R 19731855..19732030 603..778 865 99.4 Plus
chr2R 21145070 chr2R 19731624..19731785 441..602 810 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:36:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23846125..23847027 775..1677 4515 100 Plus
2R 25286936 2R 23844892..23845331 1..440 2200 100 Plus
2R 25286936 2R 23845766..23845941 603..778 880 100 Plus
2R 25286936 2R 23845535..23845696 441..602 810 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23847324..23848226 775..1677 4515 100 Plus
2R 25260384 2R 23846091..23846530 1..440 2200 100 Plus
2R 25260384 2R 23846965..23847140 603..778 880 100 Plus
2R 25260384 2R 23846734..23846895 441..602 810 100 Plus
Blast to na_te.dros performed 2019-03-15 19:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
blood 7410 blood BLOOD 7410bp 198..239 298..339 120 76.2 Plus
blood 7410 blood BLOOD 7410bp 7209..7250 298..339 120 76.2 Plus
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 2298..2405 991..1097 114 60 Plus

GH07506.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:31:14 Download gff for GH07506.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19730981..19731420 1..440 99 -> Plus
chr2R 19731624..19731785 441..602 100 -> Plus
chr2R 19731855..19732029 603..777 99 -> Plus
chr2R 19732217..19732434 778..995 99 == Plus
chr2R 19732534..19733114 1095..1674 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:23:46 Download gff for GH07506.complete
Subject Subject Range Query Range Percent Splice Strand
CG5554-RA 1..972 268..1239 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:46:39 Download gff for GH07506.complete
Subject Subject Range Query Range Percent Splice Strand
CG5554-RA 1..972 268..1239 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:52:52 Download gff for GH07506.complete
Subject Subject Range Query Range Percent Splice Strand
CG5554-RA 1..972 268..1239 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:38:54 Download gff for GH07506.complete
Subject Subject Range Query Range Percent Splice Strand
CG5554-RA 1..972 268..1239 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:19:33 Download gff for GH07506.complete
Subject Subject Range Query Range Percent Splice Strand
CG5554-RA 1..972 268..1239 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:22:20 Download gff for GH07506.complete
Subject Subject Range Query Range Percent Splice Strand
CG5554-RA 1..1674 1..1674 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:46:39 Download gff for GH07506.complete
Subject Subject Range Query Range Percent Splice Strand
CG5554-RA 1..1674 1..1674 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:52:52 Download gff for GH07506.complete
Subject Subject Range Query Range Percent Splice Strand
CG5554-RA 1..1565 110..1674 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:38:54 Download gff for GH07506.complete
Subject Subject Range Query Range Percent Splice Strand
CG5554-RA 1..1674 1..1674 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:19:33 Download gff for GH07506.complete
Subject Subject Range Query Range Percent Splice Strand
CG5554-RA 1..1565 110..1674 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:31:14 Download gff for GH07506.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23844892..23845331 1..440 100 -> Plus
2R 23845535..23845696 441..602 100 -> Plus
2R 23845766..23845940 603..777 100 -> Plus
2R 23846128..23847024 778..1674 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:31:14 Download gff for GH07506.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23844892..23845331 1..440 100 -> Plus
2R 23845535..23845696 441..602 100 -> Plus
2R 23845766..23845940 603..777 100 -> Plus
2R 23846128..23847024 778..1674 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:31:14 Download gff for GH07506.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23844892..23845331 1..440 100 -> Plus
2R 23845535..23845696 441..602 100 -> Plus
2R 23845766..23845940 603..777 100 -> Plus
2R 23846128..23847024 778..1674 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:52:52 Download gff for GH07506.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19732415..19732854 1..440 100 -> Plus
arm_2R 19733058..19733219 441..602 100 -> Plus
arm_2R 19733289..19733463 603..777 100 -> Plus
arm_2R 19733651..19734547 778..1674 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:11:20 Download gff for GH07506.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23846109..23846548 1..440 100 -> Plus
2R 23846752..23846913 441..602 100 -> Plus
2R 23846983..23847157 603..777 100 -> Plus
2R 23847345..23848241 778..1674 100   Plus

GH07506.pep Sequence

Translation from 267 to 1238

> GH07506.pep
MHSTSYFVAATCAALLLLAATAQSTAAAQSGLQPGGKLIELDEDNWHLML
QGEWMIEFFAPWCPACKNLAPTWERFARVAKDVQVQVAKIDVTTSPSLSG
RFFVTALPTIYHVKDGEFRQYRGARDGDALLYFVKKQQWQSIEPLSAWKK
PDTTHMSVLSYFFKLSHTLKDFNGRLQEEYGLPTWGSYALFAIATIFVGA
ALGLLLVCLVDFVYPPKKSQRQSFSESQDNLTEGLEDLATEEIEDDGDAE
ENDDEQRDSDEEEQEDDDEEEEDSEEQVGDLATKEKEADSEPEKEEKPEP
KQAGDAAPEKTEQVRKRKPRKGD*

GH07506.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12510-PA 322 GF12510-PA 1..322 1..323 1214 80.8 Plus
Dana\GF20267-PA 413 GF20267-PA 168..271 36..136 186 38.5 Plus
Dana\GF20267-PA 413 GF20267-PA 1..145 1..137 170 32.7 Plus
Dana\GF20619-PA 435 GF20619-PA 157..251 38..125 157 39.6 Plus
Dana\GF11803-PA 489 GF11803-PA 6..180 13..180 157 28.4 Plus
Dana\GF19631-PA 409 GF19631-PA 12..168 12..162 156 27.6 Plus
Dana\GF20619-PA 435 GF20619-PA 5..101 13..110 152 34.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22892-PA 323 GG22892-PA 1..323 1..323 1385 95.4 Plus
Dere\GG18439-PA 418 GG18439-PA 168..271 36..136 190 39.4 Plus
Dere\GG18439-PA 418 GG18439-PA 42..145 39..137 158 34.6 Plus
Dere\GG20128-PA 435 GG20128-PA 160..254 38..125 158 39.6 Plus
Dere\GG20128-PA 435 GG20128-PA 5..101 13..110 157 36.6 Plus
Dere\GG19336-PA 412 GG19336-PA 14..171 12..162 153 27.6 Plus
Dere\GG15964-PA 430 GG15964-PA 27..121 37..131 150 31.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22879-PA 219 GH22879-PA 1..177 1..175 719 76.3 Plus
Dgri\GH16648-PA 178 GH16648-PA 3..127 33..157 190 35.1 Plus
Dgri\GH24386-PA 409 GH24386-PA 167..270 36..136 187 39.4 Plus
Dgri\GH12152-PA 415 GH12152-PA 4..171 3..162 164 30.8 Plus
Dgri\GH24386-PA 409 GH24386-PA 41..144 39..137 161 34.6 Plus
Dgri\GH20405-PA 489 GH20405-PA 4..165 11..169 160 27.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5554-PA 323 CG5554-PA 1..323 1..323 1695 100 Plus
CG5554-PB 330 CG5554-PB 1..330 1..323 1677 97.9 Plus
prtp-PD 353 CG1837-PD 103..206 36..136 185 39.4 Plus
prtp-PC 416 CG1837-PC 166..269 36..136 185 39.4 Plus
prtp-PB 416 CG1837-PB 166..269 36..136 185 39.4 Plus
prtp-PA 416 CG1837-PA 166..269 36..136 185 39.4 Plus
CG11588-PB 270 CG11588-PB 49..187 36..173 180 28.1 Plus
CG11588-PA 270 CG11588-PA 49..187 36..173 180 28.1 Plus
CaBP1-PB 433 CG5809-PB 145..252 25..125 168 37.6 Plus
CaBP1-PA 433 CG5809-PA 145..252 25..125 168 37.6 Plus
prtp-PC 416 CG1837-PC 1..208 1..189 166 27.4 Plus
prtp-PB 416 CG1837-PB 1..208 1..189 166 27.4 Plus
prtp-PA 416 CG1837-PA 1..208 1..189 166 27.4 Plus
CG5027-PA 430 CG5027-PA 1..152 1..162 154 25.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21260-PA 333 GI21260-PA 1..333 1..323 1163 70 Plus
Dmoj\GI11608-PA 242 GI11608-PA 13..217 17..221 198 29.3 Plus
Dmoj\GI15325-PA 406 GI15325-PA 167..270 36..136 186 39.4 Plus
Dmoj\GI13846-PA 435 GI13846-PA 157..270 38..144 168 33.9 Plus
Dmoj\GI19593-PA 488 GI19593-PA 4..179 17..180 162 28.9 Plus
Dmoj\GI15325-PA 406 GI15325-PA 39..142 39..137 154 33.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11037-PA 316 GL11037-PA 1..316 1..323 1168 72.2 Plus
Dper\GL15145-PA 387 GL15145-PA 173..276 36..136 185 39.4 Plus
Dper\GL10278-PA 254 GL10278-PA 23..149 32..152 184 30.5 Plus
Dper\GL15145-PA 387 GL15145-PA 40..143 39..137 167 34.6 Plus
Dper\GL18482-PA 437 GL18482-PA 159..270 38..142 160 32.7 Plus
Dper\GL18482-PA 437 GL18482-PA 5..102 13..110 152 34.7 Plus
Dper\GL17836-PA 437 GL17836-PA 29..128 30..131 151 32.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18965-PA 316 GA18965-PA 1..316 1..323 1174 72.8 Plus
Dpse\GA14908-PA 421 GA14908-PA 173..276 36..136 187 39.4 Plus
Dpse\GA28663-PA 254 GA28663-PA 9..149 16..152 186 30.6 Plus
Dpse\GA14908-PA 421 GA14908-PA 40..143 39..137 169 34.6 Plus
Dpse\GA19146-PA 437 GA19146-PA 159..270 38..142 160 32.7 Plus
Dpse\GA19146-PA 437 GA19146-PA 5..102 13..110 151 34.7 Plus
Dpse\GA18605-PA 437 GA18605-PA 14..128 17..131 151 27.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16051-PA 322 GM16051-PA 1..322 1..323 1665 97.8 Plus
Dsec\GM13104-PA 416 GM13104-PA 166..269 36..136 189 39.4 Plus
Dsec\GM13104-PA 416 GM13104-PA 1..204 1..185 171 29.4 Plus
Dsec\GM25307-PA 274 GM25307-PA 49..191 36..175 163 28.7 Plus
Dsec\GM17901-PA 433 GM17901-PA 158..252 38..125 158 39.6 Plus
Dsec\GM13413-PA 412 GM13413-PA 14..171 12..162 154 27.6 Plus
Dsec\GM17901-PA 433 GM17901-PA 5..101 13..110 151 33.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11801-PA 322 GD11801-PA 1..322 1..323 1672 98.5 Plus
Dsim\GD17042-PA 416 GD17042-PA 166..269 36..136 189 39.4 Plus
Dsim\GD17042-PA 416 GD17042-PA 1..204 1..185 172 29.4 Plus
Dsim\GD14338-PA 273 GD14338-PA 49..191 36..175 163 29.4 Plus
Dsim\GD21912-PA 433 GD21912-PA 158..252 38..125 158 39.6 Plus
Dsim\GD21912-PA 433 GD21912-PA 5..101 13..110 156 35.6 Plus
Dsim\GD15757-PA 407 GD15757-PA 14..171 12..162 154 27.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20862-PA 331 GJ20862-PA 1..331 1..323 1143 67.5 Plus
Dvir\GJ11285-PA 242 GJ11285-PA 1..150 1..152 225 37.2 Plus
Dvir\GJ14762-PA 410 GJ14762-PA 168..271 36..136 179 37.5 Plus
Dvir\GJ17455-PA 438 GJ17455-PA 160..271 38..142 162 33.6 Plus
Dvir\GJ18390-PA 489 GJ18390-PA 5..180 12..180 159 27 Plus
Dvir\GJ14762-PA 410 GJ14762-PA 53..142 52..137 152 35.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15815-PA 346 GK15815-PA 1..346 1..323 1148 72.5 Plus
Dwil\GK19127-PA 254 GK19127-PA 15..217 15..208 194 27.1 Plus
Dwil\GK17161-PA 269 GK17161-PA 62..244 39..208 191 29.8 Plus
Dwil\GK25489-PA 415 GK25489-PA 167..272 36..138 183 37.7 Plus
Dwil\GK17026-PA 244 GK17026-PA 45..188 38..173 167 31.2 Plus
Dwil\GK25489-PA 415 GK25489-PA 9..134 15..137 160 32 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14330-PA 323 GE14330-PA 1..323 1..323 1383 96 Plus
Dyak\GE15661-PA 412 GE15661-PA 162..265 36..136 190 39.4 Plus
Dyak\GE11008-PA 412 GE11008-PA 14..171 12..162 160 28.2 Plus
Dyak\GE12817-PA 433 GE12817-PA 158..252 38..125 158 39.6 Plus
Dyak\GE19532-PA 430 GE19532-PA 1..121 1..131 153 29.8 Plus
Dyak\GE12817-PA 433 GE12817-PA 5..101 13..110 150 34.7 Plus

GH07506.hyp Sequence

Translation from 267 to 1238

> GH07506.hyp
MHSTSYFVAATCAALLLLAATAQSTAAAQSGLQPGGKLIELDEDNWHLML
QGEWMIEFFAPWCPACKNLAPTWERFARVAKDVQVQVAKIDVTTSPSLSG
RFFVTALPTIYHVKDGEFRQYRGARDGDALLYFVKKQQWQSIEPLSAWKK
PDTTHMSVLSYFFKLSHTLKDFNGRLQEEYGLPTWGSYALFAIATIFVGA
ALGLLLVCLVDFVYPPKKSQRQSFSESQDNLTEGLEDLATEEIEDDGDAE
ENDDEQRDSDEEEQEDDDEEEEDSEEQVGDLATKEKEADSEPEKEEKPEP
KQAGDAAPEKTEQVRKRKPRKGD*

GH07506.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5554-PA 323 CG5554-PA 1..323 1..323 1695 100 Plus
CG5554-PB 330 CG5554-PB 1..330 1..323 1677 97.9 Plus
prtp-PD 353 CG1837-PD 103..206 36..136 185 39.4 Plus
prtp-PC 416 CG1837-PC 166..269 36..136 185 39.4 Plus
prtp-PB 416 CG1837-PB 166..269 36..136 185 39.4 Plus
prtp-PC 416 CG1837-PC 1..208 1..189 166 27.4 Plus