Clone GH07590 Report

Search the DGRC for GH07590

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:75
Well:90
Vector:pOT2
Associated Gene/TranscriptCG6218-RA
Protein status:GH07590.pep: gold
Preliminary Size:1300
Sequenced Size:1314

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6218 2001-01-01 Release 2 assignment
CG6218 2003-01-01 Sim4 clustering to Release 3
CG6218 2003-01-14 Blastp of sequenced clone
CG6218 2008-04-29 Release 5.5 accounting
CG6218 2008-08-15 Release 5.9 accounting
CG6218 2008-12-18 5.12 accounting

Clone Sequence Records

GH07590.complete Sequence

1314 bp (1314 high quality bases) assembled on 2003-01-14

GenBank Submission: AY069061

> GH07590.complete
TCAAAGCGTTCGGAACGTGGACGGATTGAGCTCCGCCGGGAACCGCCTTC
TCCACATCAACAGCCTTTTGAACCACATTCCTGTTGGGATTCGCTTTGGC
CCAGCTTGCTAACTCACAATGAAATATTTTGGCGGAGTCGAAGGCGGAGC
CACCCACTCCAGACTGGTCATCTGCGATGAGAGCGGCCAATCTGTGGGCG
CCACCAGCGGCCTGGGCACCAATCACTGGGGCATTGGCATTCCGGAGTGC
GCCCGCCGGATCGCTGACATGGTGGAGCGGGCGAAGGAGGAGGCGGGCAT
TCCCAAGGAGACGCCCCTCACAAGTCTGGGATTGAGCCTTAGCGGCTGCG
AGCAGGAGGCCACCAATCGCGAGCTGGAGCAGGAGCTGCGCACCACGTTT
CCGGGCCTGGCCCAGAACTATGCCGTGTCCAGCGACACCATGGGCAGCAT
GTACACCGCCTCGTCCATCGGAGGAATGGTCCTTATTTCAGGAACCGGAT
CCAATTGCCTGCTGCGTAACCCTGACGGCTCCACGTCCAATTGTGGCGGC
TGGGGCAACTTCCTCGGGGACGAGGGAAGCGCCTGGTACATCTCGTATCG
CGCAGTCAAGGTGGTGTTCGACCATATGGACAACTTTGAGCAGTCAGCGG
CTCCCGTGGAGAAAACTTGGAGTCTGATCAAGGAGCACTTTAGTTTGGAG
ACGCGCCTGGATATGCTGCCGCACTGTTACGCCAAGTTCGACAAGCCCTT
CTTCGCCAATCTGTGCAAAAAGCTGTCGCAGAACGCCGAAAATGGAGACG
AACTGGCGCGCAGCTTGTTTCGCGAAGCTGGCGTTCATCTGGCCAGAATG
ATCCTTGCCCTGCTGCCCAATGTGCACCAGGATCTGGTCAAGTCCGGGGA
CCTAAGCGTAGTGTGCGTAGGATCCGTGTGGTCCAGCTGGGATCTGCTGC
AGGAGGCCTTCATCAGTGAACTCGCTAAGACAACCATCGACTTCGACCTC
AAGCTGGTGCGCATCACCAAGAGCAGTGCCTACGGAGCCTGCTACCTGGG
TGCGGATAGTGCGGACTTCGATCTTCCGAGAAACTATGCCGACAACGTCA
CAGTACTGTACACGTACACCGATCCTCGAAAGAAAGCCAAAGCCACCAAC
GGCTGTAACTGTTAGATAAATTGTGTTTGACAACCCATTCCGCAATACAC
TTCCCAATTGCCAAATTCGCAATCAATATTCCAGTTAGTGGTACGGATAG
GTAGTATTATAGCTTATCAAAAAATAAATAATTTTATCCTTTGACGAAAA
AAAAAAAAAAAAAA

GH07590.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6218-RA 2151 CG6218-RA 309..1607 1..1299 6495 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11163079..11163794 1296..581 3580 100 Minus
chr3R 27901430 chr3R 11163986..11164214 581..353 1145 100 Minus
chr3R 27901430 chr3R 11164304..11164516 356..144 1065 100 Minus
chr3R 27901430 chr3R 11166915..11167020 144..39 530 100 Minus
chr3R 27901430 chr3R 11167593..11167632 40..1 200 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:36:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15338450..15339168 1299..581 3595 100 Minus
3R 32079331 3R 15339360..15339588 581..353 1145 100 Minus
3R 32079331 3R 15339678..15339890 356..144 1065 100 Minus
3R 32079331 3R 15342289..15342394 144..39 530 100 Minus
3R 32079331 3R 15342967..15343006 40..1 200 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15079281..15079999 1299..581 3595 100 Minus
3R 31820162 3R 15080191..15080419 581..353 1145 100 Minus
3R 31820162 3R 15080509..15080721 356..144 1065 100 Minus
3R 31820162 3R 15083120..15083225 144..39 530 100 Minus
3R 31820162 3R 15083798..15083837 40..1 200 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:52:57 has no hits.

GH07590.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:53:46 Download gff for GH07590.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11163986..11164211 356..581 100 <- Minus
chr3R 11163079..11163793 582..1296 100 <- Minus
chr3R 11164305..11164515 145..355 100 <- Minus
chr3R 11166915..11167019 40..144 100 <- Minus
chr3R 11167594..11167632 1..39 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:23:53 Download gff for GH07590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6218-RA 1..1047 119..1165 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:58:05 Download gff for GH07590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6218-RA 1..1047 119..1165 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:12:41 Download gff for GH07590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6218-RA 1..1047 119..1165 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:48:53 Download gff for GH07590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6218-RA 1..1047 119..1165 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:10:52 Download gff for GH07590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6218-RA 1..1047 119..1165 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:14:32 Download gff for GH07590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6218-RA 251..1546 1..1296 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:58:05 Download gff for GH07590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6218-RA 251..1546 1..1296 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:12:41 Download gff for GH07590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6218-RA 251..1546 1..1296 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:48:54 Download gff for GH07590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6218-RA 251..1546 1..1296 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:52 Download gff for GH07590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6218-RA 251..1546 1..1296 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:46 Download gff for GH07590.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15338453..15339167 582..1296 100 <- Minus
3R 15339360..15339585 356..581 100 <- Minus
3R 15339679..15339889 145..355 100 <- Minus
3R 15342289..15342393 40..144 100 <- Minus
3R 15342968..15343006 1..39 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:46 Download gff for GH07590.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15338453..15339167 582..1296 100 <- Minus
3R 15339360..15339585 356..581 100 <- Minus
3R 15339679..15339889 145..355 100 <- Minus
3R 15342289..15342393 40..144 100 <- Minus
3R 15342968..15343006 1..39 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:46 Download gff for GH07590.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15338453..15339167 582..1296 100 <- Minus
3R 15339360..15339585 356..581 100 <- Minus
3R 15339679..15339889 145..355 100 <- Minus
3R 15342289..15342393 40..144 100 <- Minus
3R 15342968..15343006 1..39 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:12:41 Download gff for GH07590.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11164175..11164889 582..1296 100 <- Minus
arm_3R 11165082..11165307 356..581 100 <- Minus
arm_3R 11165401..11165611 145..355 100 <- Minus
arm_3R 11168011..11168115 40..144 100 <- Minus
arm_3R 11168690..11168728 1..39 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:20:19 Download gff for GH07590.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15083120..15083224 40..144 100 <- Minus
3R 15083799..15083837 1..39 100   Minus
3R 15079284..15079998 582..1296 100 <- Minus
3R 15080191..15080416 356..581 100 <- Minus
3R 15080510..15080720 145..355 100 <- Minus

GH07590.pep Sequence

Translation from 118 to 1164

> GH07590.pep
MKYFGGVEGGATHSRLVICDESGQSVGATSGLGTNHWGIGIPECARRIAD
MVERAKEEAGIPKETPLTSLGLSLSGCEQEATNRELEQELRTTFPGLAQN
YAVSSDTMGSMYTASSIGGMVLISGTGSNCLLRNPDGSTSNCGGWGNFLG
DEGSAWYISYRAVKVVFDHMDNFEQSAAPVEKTWSLIKEHFSLETRLDML
PHCYAKFDKPFFANLCKKLSQNAENGDELARSLFREAGVHLARMILALLP
NVHQDLVKSGDLSVVCVGSVWSSWDLLQEAFISELAKTTIDFDLKLVRIT
KSSAYGACYLGADSADFDLPRNYADNVTVLYTYTDPRKKAKATNGCNC*

GH07590.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23238-PA 356 GF23238-PA 1..354 1..348 1624 85 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20660-PA 349 GG20660-PA 1..345 1..345 1805 96.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21802-PA 349 GH21802-PA 1..333 1..333 1501 81.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6218-PB 348 CG6218-PB 1..348 1..348 1836 100 Plus
CG6218-PA 348 CG6218-PA 1..348 1..348 1836 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21927-PA 350 GI21927-PA 1..333 1..333 1468 78.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24295-PA 355 GL24295-PA 1..352 1..348 1531 81.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19449-PA 355 GA19449-PA 1..352 1..348 1544 81.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25783-PA 348 GM25783-PA 1..348 1..348 1851 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20360-PA 348 GD20360-PA 1..348 1..348 1851 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14287-PA 348 GJ14287-PA 1..333 1..333 1515 82.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11957-PA 351 GK11957-PA 1..332 1..332 1577 87.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26388-PA 349 GE26388-PA 1..345 1..345 1805 96.8 Plus

GH07590.hyp Sequence

Translation from 118 to 1164

> GH07590.hyp
MKYFGGVEGGATHSRLVICDESGQSVGATSGLGTNHWGIGIPECARRIAD
MVERAKEEAGIPKETPLTSLGLSLSGCEQEATNRELEQELRTTFPGLAQN
YAVSSDTMGSMYTASSIGGMVLISGTGSNCLLRNPDGSTSNCGGWGNFLG
DEGSAWYISYRAVKVVFDHMDNFEQSAAPVEKTWSLIKEHFSLETRLDML
PHCYAKFDKPFFANLCKKLSQNAENGDELARSLFREAGVHLARMILALLP
NVHQDLVKSGDLSVVCVGSVWSSWDLLQEAFISELAKTTIDFDLKLVRIT
KSSAYGACYLGADSADFDLPRNYADNVTVLYTYTDPRKKAKATNGCNC*

GH07590.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6218-PB 348 CG6218-PB 1..348 1..348 1836 100 Plus
CG6218-PA 348 CG6218-PA 1..348 1..348 1836 100 Plus