Clone GH07619 Report

Search the DGRC for GH07619

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:76
Well:19
Vector:pOT2
Associated Gene/TranscriptMfap1-RA
Protein status:GH07619.pep: gold
Preliminary Size:2200
Sequenced Size:1706

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1017 2001-01-01 Release 2 assignment
CG1017 2001-07-04 Blastp of sequenced clone
CG1017 2003-01-01 Sim4 clustering to Release 3
CG1017 2008-04-29 Release 5.5 accounting
CG1017 2008-08-15 Release 5.9 accounting
CG1017 2008-12-18 5.12 accounting

Clone Sequence Records

GH07619.complete Sequence

1706 bp (1706 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047562

> GH07619.complete
ATTTTCAGATACTTTTGTCCATCTCTAATTTACCATACTTTTATTTAGGA
AATATTTACAAGGAATAAATACAAAGATTTGCTTATTACCCGTGGATTAT
AAGTTAAAACCACGATGAGTGCAGCCACCGCCGCCGCCGCCGCTTCTGGG
ATCCAGAGCACAGCGGGCGCCATTCCCATGCGCAATGAGAAAGGTGAATT
GTCCATGCAAAAGGTGAAGGTGCAGCGATACATATCCGGTAAGCGACCCG
ACTACGCCCGTGCGGACTCCAGTTCGGAGGAGAGCGACGACGATGACTTC
ATTGACACCAGGAAGCGCCTTGAGCGCCACAAGGCGGAACGGCATAAGCT
GGAGCTCTCCCGTCAAGGCGGCAGCGCGGAGGGCGAAGAGCGGGCGGCGG
GTGAGGGCCAGGAGGAGGACGATGCCGAGGTGGACGATCCACGCCTCCGA
AGATTGCGGCAGCGACCCGTAGACATGGAGGACATGGAACGTGAGCGGAG
GGAACGCCACCGACACATCCACGAACCGGAAATCATGGAGAGTGACAGCG
AAGACGAGGAGGAAGACGAGGGAGCACAGGGAGCGATTCAGCGGGGCACC
AATAAGATCACACTGGCATCCGAATCCGACACGGATGCGGAGCTCAGCGA
CACAGAGCTGGAGAACCGGCGCACCAAGCTGAGATCCCGCATGCTGCAGC
AGCAGCGCGAGGAGGAGGTTCTACAGAAAGAGGATGAGAAACAGTCGGAA
TCGTCCGAATCAGAAAGCTCCGAGTACGAGGAGGAGACCGAAAGCGAGGA
GGACAACGAACCCCGCCTGAAGCCGCTCTTCGTCCGAAAGAGAGATCGTG
CCACCATCCAGGAGAAGGAGCGAGAGGCTCAGAAGCAGAAGCAGCTGGAG
GCGGAGGCCAAGCGGGCAGCCAAGGAGCGCAGAAGAGCCACCCTGCGAAT
GGTCGAGGAGAGCGTCAAGAAAGATCTGGAGAAGACCAAGCCGGAGACCA
ATGAGGCCTGCATCGAGGACGTGTGCACGGACGACGAAAACGACGAGGTG
GAATACGAGGCCTGGAAGCTGCGTGAACTCAAGCGAATGAAGCGGGATCG
CGAGGAACGTGATAACGTCGAACGCGAGAAGCTGGACATTGATCGCATGC
GCAACATGACCGAAGAGGAGCGACGCCAGGAGCTGCGCCAGAACCCCAAG
GTGGTCACCAACAAGGCCACCAAGGGCAAGTACAAGTTCCTGCAGAAGTA
CTATCATCGTGGTGCCTTCTACCTGGATGAGGAGAACGACGTCCTCAAGC
GCGACTTCGCCCAGGCCACGCTGGAGGATCACTTCGATAAGACCATTCTG
CCCAAGGTGATGCAGGTGAAGAACTTCGGCCGCTGCGGCCGCACCAAGTA
CACTCATTTAGTGGACCAGGACACCACCAAGTTCGACTCGCCCTGGTACG
CCGAGTCATCCAGCAACATCAAGTTCCACAACGAACACGCCGGCGGCATG
AGGCAGCAGTTTGACAAGCCCACCGGCTCGAAGCGAAAAAAGATGGAGTA
GTGTTAGACGTATGTAATTGATGTATTTGACAGGCATTAGGAAAGTAACA
AGTAAATATTGTGCGGCCACAGTTATGATGGAACCAAAACTTCATATACA
AACAATTATATATAATACAAATATCATAAGTTTAAGGTAAAAAAAAAAAA
AAAAAA

GH07619.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
Mfap1-RA 1707 Mfap1-RA 1..1689 1..1689 8445 100 Plus
mu2-RA 4217 mu2-RA 4043..4217 1689..1515 875 100 Minus
mu2-RB 4116 mu2-RB 3972..4116 1689..1545 725 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1940876..1941799 192..1115 4620 100 Plus
chr3L 24539361 chr3L 1941862..1942434 1116..1688 2865 100 Plus
chr3L 24539361 chr3L 1940624..1940818 1..195 975 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:36:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1941314..1942237 192..1115 4620 100 Plus
3L 28110227 3L 1942300..1942873 1116..1689 2870 100 Plus
3L 28110227 3L 1941062..1941256 1..195 975 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1941314..1942237 192..1115 4620 100 Plus
3L 28103327 3L 1942300..1942873 1116..1689 2870 100 Plus
3L 28103327 3L 1941062..1941256 1..195 975 100 Plus
Blast to na_te.dros performed 2019-03-16 15:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1057..1148 851..941 114 62.4 Plus

GH07619.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:46:39 Download gff for GH07619.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1940624..1940816 1..193 100 -> Plus
chr3L 1940878..1941799 194..1115 100 -> Plus
chr3L 1941862..1942434 1116..1688 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:23:54 Download gff for GH07619.complete
Subject Subject Range Query Range Percent Splice Strand
CG1017-RA 1..1437 115..1551 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:29:05 Download gff for GH07619.complete
Subject Subject Range Query Range Percent Splice Strand
Mfap1-RA 1..1437 115..1551 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:53:01 Download gff for GH07619.complete
Subject Subject Range Query Range Percent Splice Strand
Mfap1-RA 1..1437 115..1551 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:02:30 Download gff for GH07619.complete
Subject Subject Range Query Range Percent Splice Strand
CG1017-RA 1..1437 115..1551 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:53:01 Download gff for GH07619.complete
Subject Subject Range Query Range Percent Splice Strand
Mfap1-RA 1..1437 115..1551 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:29:24 Download gff for GH07619.complete
Subject Subject Range Query Range Percent Splice Strand
CG1017-RA 1..1688 1..1688 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:29:05 Download gff for GH07619.complete
Subject Subject Range Query Range Percent Splice Strand
Mfap1-RA 1..1688 1..1688 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:53:01 Download gff for GH07619.complete
Subject Subject Range Query Range Percent Splice Strand
Mfap1-RA 1..1682 7..1688 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:02:31 Download gff for GH07619.complete
Subject Subject Range Query Range Percent Splice Strand
CG1017-RA 1..1688 1..1688 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:53:01 Download gff for GH07619.complete
Subject Subject Range Query Range Percent Splice Strand
Mfap1-RA 1..1682 7..1688 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:46:39 Download gff for GH07619.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1941062..1941254 1..193 100 -> Plus
3L 1941316..1942237 194..1115 100 -> Plus
3L 1942300..1942872 1116..1688 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:46:39 Download gff for GH07619.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1941062..1941254 1..193 100 -> Plus
3L 1941316..1942237 194..1115 100 -> Plus
3L 1942300..1942872 1116..1688 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:46:39 Download gff for GH07619.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1941062..1941254 1..193 100 -> Plus
3L 1941316..1942237 194..1115 100 -> Plus
3L 1942300..1942872 1116..1688 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:53:01 Download gff for GH07619.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1941062..1941254 1..193 100 -> Plus
arm_3L 1941316..1942237 194..1115 100 -> Plus
arm_3L 1942300..1942872 1116..1688 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:40:29 Download gff for GH07619.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1941316..1942237 194..1115 100 -> Plus
3L 1942300..1942872 1116..1688 100   Plus
3L 1941062..1941254 1..193 100 -> Plus

GH07619.pep Sequence

Translation from 114 to 1550

> GH07619.pep
MSAATAAAAASGIQSTAGAIPMRNEKGELSMQKVKVQRYISGKRPDYARA
DSSSEESDDDDFIDTRKRLERHKAERHKLELSRQGGSAEGEERAAGEGQE
EDDAEVDDPRLRRLRQRPVDMEDMERERRERHRHIHEPEIMESDSEDEEE
DEGAQGAIQRGTNKITLASESDTDAELSDTELENRRTKLRSRMLQQQREE
EVLQKEDEKQSESSESESSEYEEETESEEDNEPRLKPLFVRKRDRATIQE
KEREAQKQKQLEAEAKRAAKERRRATLRMVEESVKKDLEKTKPETNEACI
EDVCTDDENDEVEYEAWKLRELKRMKRDREERDNVEREKLDIDRMRNMTE
EERRQELRQNPKVVTNKATKGKYKFLQKYYHRGAFYLDEENDVLKRDFAQ
ATLEDHFDKTILPKVMQVKNFGRCGRTKYTHLVDQDTTKFDSPWYAESSS
NIKFHNEHAGGMRQQFDKPTGSKRKKME*

GH07619.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24847-PA 477 GF24847-PA 2..477 5..478 1850 86.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14837-PA 476 GG14837-PA 1..476 1..478 2435 98.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16168-PA 472 GH16168-PA 2..472 5..478 1773 85.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
Mfap1-PA 478 CG1017-PA 1..478 1..478 2449 100 Plus
CG2839-PA 826 CG2839-PA 419..748 23..378 260 25.1 Plus
CG2839-PA 826 CG2839-PA 280..570 44..356 250 24.8 Plus
CG2839-PA 826 CG2839-PA 266..574 23..359 248 23.7 Plus
CG2839-PA 826 CG2839-PA 268..558 66..360 231 26.3 Plus
CG2839-PA 826 CG2839-PA 331..639 43..382 229 24.9 Plus
CG2839-PA 826 CG2839-PA 290..675 26..382 226 23.6 Plus
CG2839-PA 826 CG2839-PA 466..750 28..299 220 25.2 Plus
rudhira-PE 2075 CG43154-PE 1226..1632 3..378 216 22.1 Plus
rudhira-PC 2075 CG43154-PC 1226..1632 3..378 216 22.1 Plus
Strn-Mlck-PT 7905 CG44162-PT 3776..4155 32..409 208 23.1 Plus
Strn-Mlck-PV 7944 CG44162-PV 3815..4194 32..409 208 23.1 Plus
Strn-Mlck-PS 8216 CG44162-PS 3776..4155 32..409 208 23.1 Plus
Strn-Mlck-PU 8255 CG44162-PU 3815..4194 32..409 208 23.1 Plus
CG2839-PA 826 CG2839-PA 264..540 95..359 204 25.4 Plus
Strn-Mlck-PT 7905 CG44162-PT 3516..3895 32..409 204 24.7 Plus
Strn-Mlck-PV 7944 CG44162-PV 3555..3934 32..409 204 24.7 Plus
Strn-Mlck-PS 8216 CG44162-PS 3516..3895 32..409 204 24.7 Plus
Strn-Mlck-PU 8255 CG44162-PU 3555..3934 32..409 204 24.7 Plus
CG2839-PA 826 CG2839-PA 499..793 43..332 203 23.7 Plus
Strn-Mlck-PT 7905 CG44162-PT 3971..4415 32..409 197 22.5 Plus
Strn-Mlck-PV 7944 CG44162-PV 4010..4454 32..409 197 22.5 Plus
Strn-Mlck-PS 8216 CG44162-PS 3971..4415 32..409 197 22.5 Plus
Strn-Mlck-PU 8255 CG44162-PU 4010..4454 32..409 197 22.5 Plus
Strn-Mlck-PT 7905 CG44162-PT 4621..5000 32..409 191 23.1 Plus
Strn-Mlck-PV 7944 CG44162-PV 4660..5039 32..409 191 23.1 Plus
Strn-Mlck-PS 8216 CG44162-PS 4621..5000 32..409 191 23.1 Plus
Strn-Mlck-PU 8255 CG44162-PU 4660..5039 32..409 191 23.1 Plus
CG2839-PA 826 CG2839-PA 269..513 126..372 187 26 Plus
rudhira-PE 2075 CG43154-PE 1382..1657 51..340 185 23.2 Plus
rudhira-PC 2075 CG43154-PC 1382..1657 51..340 185 23.2 Plus
Strn-Mlck-PT 7905 CG44162-PT 4166..4541 32..405 183 22.8 Plus
Strn-Mlck-PV 7944 CG44162-PV 4205..4580 32..405 183 22.8 Plus
Strn-Mlck-PS 8216 CG44162-PS 4166..4541 32..405 183 22.8 Plus
Strn-Mlck-PU 8255 CG44162-PU 4205..4580 32..405 183 22.8 Plus
Strn-Mlck-PT 7905 CG44162-PT 4361..4805 32..409 181 22.6 Plus
Strn-Mlck-PV 7944 CG44162-PV 4400..4844 32..409 181 22.6 Plus
Strn-Mlck-PS 8216 CG44162-PS 4361..4805 32..409 181 22.6 Plus
Strn-Mlck-PU 8255 CG44162-PU 4400..4844 32..409 181 22.6 Plus
CG7971-PG 1062 CG7971-PG 176..548 3..372 180 21.4 Plus
CG7971-PA 1062 CG7971-PA 176..548 3..372 180 21.4 Plus
CG7971-PC 1107 CG7971-PC 176..548 3..372 180 21.4 Plus
CG7971-PF 1655 CG7971-PF 401..773 3..372 180 21.4 Plus
rgn-PD 800 CG6014-PD 480..800 25..352 177 25.7 Plus
rgn-PA 800 CG6014-PA 480..800 25..352 177 25.7 Plus
rgn-PC 808 CG6014-PC 488..808 25..352 177 25.7 Plus
rgn-PB 808 CG6014-PB 488..808 25..352 177 25.7 Plus
Strn-Mlck-PT 7905 CG44162-PT 4816..5146 32..372 175 22.7 Plus
Strn-Mlck-PV 7944 CG44162-PV 4855..5185 32..372 175 22.7 Plus
Strn-Mlck-PS 8216 CG44162-PS 4816..5146 32..372 175 22.7 Plus
Strn-Mlck-PU 8255 CG44162-PU 4855..5185 32..372 175 22.7 Plus
CG2839-PA 826 CG2839-PA 510..749 25..258 171 23.3 Plus
rgn-PD 800 CG6014-PD 325..648 67..391 171 22.9 Plus
rgn-PA 800 CG6014-PA 325..648 67..391 171 22.9 Plus
rgn-PC 808 CG6014-PC 333..656 67..391 171 22.9 Plus
rgn-PB 808 CG6014-PB 333..656 67..391 171 22.9 Plus
rgn-PD 800 CG6014-PD 463..776 55..359 166 23.3 Plus
rgn-PA 800 CG6014-PA 463..776 55..359 166 23.3 Plus
rgn-PC 808 CG6014-PC 471..784 55..359 166 23.3 Plus
rgn-PB 808 CG6014-PB 471..784 55..359 166 23.3 Plus
Strn-Mlck-PT 7905 CG44162-PT 3438..3761 63..405 162 21.3 Plus
Strn-Mlck-PV 7944 CG44162-PV 3477..3800 63..405 162 21.3 Plus
Strn-Mlck-PS 8216 CG44162-PS 3438..3761 63..405 162 21.3 Plus
Strn-Mlck-PU 8255 CG44162-PU 3477..3800 63..405 162 21.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13320-PA 473 GI13320-PA 2..473 5..478 1740 86.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25318-PA 469 GL25318-PA 2..469 5..478 1869 87.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10128-PA 469 GA10128-PA 2..469 5..478 1869 87.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14461-PA 286 GM14461-PA 1..286 193..478 1511 100 Plus
Dsec\GM14460-PA 188 GM14460-PA 10..156 11..157 471 95.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13659-PA 478 GD13659-PA 1..478 1..478 2501 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12090-PA 472 GJ12090-PA 1..472 1..478 1794 86.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12529-PA 474 GK12529-PA 2..474 5..478 1750 83.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21202-PA 476 GE21202-PA 1..476 1..478 2447 98.1 Plus

GH07619.hyp Sequence

Translation from 114 to 1550

> GH07619.hyp
MSAATAAAAASGIQSTAGAIPMRNEKGELSMQKVKVQRYISGKRPDYARA
DSSSEESDDDDFIDTRKRLERHKAERHKLELSRQGGSAEGEERAAGEGQE
EDDAEVDDPRLRRLRQRPVDMEDMERERRERHRHIHEPEIMESDSEDEEE
DEGAQGAIQRGTNKITLASESDTDAELSDTELENRRTKLRSRMLQQQREE
EVLQKEDEKQSESSESESSEYEEETESEEDNEPRLKPLFVRKRDRATIQE
KEREAQKQKQLEAEAKRAAKERRRATLRMVEESVKKDLEKTKPETNEACI
EDVCTDDENDEVEYEAWKLRELKRMKRDREERDNVEREKLDIDRMRNMTE
EERRQELRQNPKVVTNKATKGKYKFLQKYYHRGAFYLDEENDVLKRDFAQ
ATLEDHFDKTILPKVMQVKNFGRCGRTKYTHLVDQDTTKFDSPWYAESSS
NIKFHNEHAGGMRQQFDKPTGSKRKKME*

GH07619.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
Mfap1-PA 478 CG1017-PA 1..478 1..478 2449 100 Plus
CG2839-PA 826 CG2839-PA 419..748 23..378 260 25.1 Plus
CG2839-PA 826 CG2839-PA 280..570 44..356 250 24.8 Plus
CG2839-PA 826 CG2839-PA 266..574 23..359 248 23.7 Plus
CG2839-PA 826 CG2839-PA 268..558 66..360 231 26.3 Plus
CG2839-PA 826 CG2839-PA 331..639 43..382 229 24.9 Plus
CG2839-PA 826 CG2839-PA 290..675 26..382 226 23.6 Plus
CG2839-PA 826 CG2839-PA 466..750 28..299 220 25.2 Plus
rudhira-PE 2075 CG43154-PE 1226..1632 3..378 216 22.1 Plus
rudhira-PC 2075 CG43154-PC 1226..1632 3..378 216 22.1 Plus
Strn-Mlck-PT 7905 CG44162-PT 3776..4155 32..409 208 23.1 Plus
CG2839-PA 826 CG2839-PA 264..540 95..359 204 25.4 Plus
CG2839-PA 826 CG2839-PA 499..793 43..332 203 23.7 Plus
CG2839-PA 826 CG2839-PA 269..513 126..372 187 26 Plus
rudhira-PE 2075 CG43154-PE 1382..1657 51..340 185 23.2 Plus
rudhira-PC 2075 CG43154-PC 1382..1657 51..340 185 23.2 Plus
CG2839-PA 826 CG2839-PA 510..749 25..258 171 23.3 Plus