Clone GH07688 Report

Search the DGRC for GH07688

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:76
Well:88
Vector:pOT2
Associated Gene/Transcriptcert-RA
Protein status:GH07688.pep: gold
Preliminary Size:2534
Sequenced Size:2566

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7207 2000-02-14 Blastp of sequenced clone
CG7207 2001-01-01 Release 2 assignment
CG7207 2003-01-01 Sim4 clustering to Release 3
CG7207 2008-04-29 Release 5.5 accounting
CG7207 2008-08-15 Release 5.9 accounting
CG7207 2008-12-18 5.12 accounting

Clone Sequence Records

GH07688.complete Sequence

2566 bp (2566 high quality bases) assembled on 2000-02-14

GenBank Submission: AF145644

> GH07688.complete
AAAAAAACATCAGCGTCGTGAGTTCTCTTCGCTTATTTACCAAGCCTCCC
ACAAACAAGCCAGAGCATTACGTGTTGCACAGATGTTTGCGGATCGTCGA
GGAAATCAATAAACGAAAGATAACTTGGCAGTTGAACTCCGGAGCTGGAA
GAGGATGGACACGAACGCTGGGGAGTCGCTGGGAGCATCGCCGCCCTCGA
GCAATGAGGCAGCGGCGGGATCACAGTCCCAGAGCGATGCCTCCGAGGAG
GAGGAGTATCTGGACAACAGTATCGAACTGAGGGGCTATCTCAGCAAGTG
GACGAACTACATCTATGGATGGCAGCCACGCTACATAGTCCTGAAGGATG
GTACACTCTCCTACTATAAATCCGAATCGGAGTCGGATTTCGGGTGCCGC
GGAGCCATCAGCCTGACCAAGGCCACCATTAAGGCCCATGAGTCCGACGA
GCTCCGATTCGATGTTGTGGTGAACAACTTAAATAACTGGTGCCTGCGGG
CAGAGACCAGCGAGGACCGCATGCACTGGGTGGATGTGCTGCAGCTGTAC
AAGGCGGACTCCGGCAGCACGGACACCACTTCCTTGCGCCGCCATGGCAG
TACCATGAGCCTGCAATCGAACACTATCTCGCTGACCAGCGGAGGAAGCC
TAAAGAAGACGCAGCGCAACCTGCGCGAAAAAGTCGGCGAGCTGGAGACC
TTTAAGGATATACTATTTGGACAGATCGAGACTCTGCAGCGATACTTTGA
TGCCTGCTCGGAGGTGAACAAAAACAATGCGCAACCACTGGACCTGGGCG
ACGGTCTGAAGTCCATCGATTTCAAGGGCGAATCCATCACGTTTCGGGCC
ACAACGTCTGGCGTGCTAACCACCCTGCAGCATTGCCTAGAAATCATCGC
CGAGAGCGATGAGTCATGGAAACGGAAACTGGAGCGTGAAATAGATAAGC
GTCGACGTTCTGAGGACCAAAGCAAAAAGCTCAAGGATGAAGTTGAGAAA
ATGAAGCGTCTATCGTATCCTGGCCCAGATTTCGAGGAGGGTCCACATTC
CACATTGCCCGAGGATGAGTTCTTCGATGCGGTCGAAACGGGCCTGGACA
AAATCGAGGAGGACATGCAGCTGCGCTTCAAGCTTAAGCTGCAGTCCCAG
ATCTCCCAGACACTGGTCAACGTTCCACACGAGGCGGTGGCCGAGGGCGA
GGAGGCGCGCGAGGAGTTCGGCACGGGTGCGGAGGCCACCAGCCATGCCC
TGTGGCCGGAGATCGATCGCGTGTGCAAGGAGCAACTGCATTACGCACGC
GAGGGCGTTGGCCAAGACGGCAACGGCTGGCAAATCTTTGCCGACGAGGG
GGAGATCAAAATGTACAAACGCGAGGAGGAGGTCAACGGGCTGGTCATGG
ATCCCTTGAAGGCCTATCATACGGTGCAGGGCGTGACGGCGAGGGAAATG
TGCCATTACTTCTTCATGCCCGAGTTCCGAAATGACTGGGAGACCACTTT
GGAGGACTGCACCATCCTGGAAAAAATCTCGGCGGACACCCTGCTTTTCC
TGCAAACCCATAAGCGGATATGGCCGGCGAGCCAGCGTGATGCGCAATTT
TGGTCGCACATGCGCAAGATCACAGACAATCTGGAGCCGGGCGCCCGGGA
CATGTGGGTGGTGTGCAACAACTCGACGGAGTACGCCAAGCAGGAGTCAA
AGAATGGAAAATGCGTACGGATCTTCCTGACCGTCATCCTGGCCTGCCAA
ACTCATTTGCCCGAGGGTTATGTGAAGGGACAGCCCCTAAATCGCAACGA
TCTAACCTGCAAAATAACCTACTGCTCTGTTGTTAATCCTGGAGGCTGGG
CGCCAGCGAGTGCTCTGAGAGCCGTCTACAAGCGCGAGTATCCCAAGTTT
CTGAAGCGCTTTACGGGATACGTAATAGATCAGTGCAAGGACAAGCCGAT
CATGTTCTGATATTTGCCATAAGCAAGAAAGCAATCAAAACCAATCAAAG
CTGAATCGTCTCACGTATTTAGCTCAAACTTTATCCTTAATAAGCCTCCA
GTTTGTGGCCTCAACTATATTTTGGAATCTGTTTTGCTACTCCTTACTAC
AATTTTATAACCATTTCGTTGAGTTTCACGACTTTGGTTCTTCTGTACAA
GAGTGTTTTCCAAGCGAAATGTTAGAATCCCCTTTTGTATTTGCGCTAAG
GCAACCAAGATATAGTGTAACCAATTTAGCCGTAAGTTATGTGTAAGTGA
AACACAATCATTGTATAGATCTTAGTTCCAAAACTTTCTATCTGTAGTGT
ATATCTTTATGGAAATGCTTTAAATGCAACAATTGCAAGAATGATGTGAG
GGATGCATAGCTACATATACGAAAGCTTTTCTTTTGGTGTGAATCTATAT
TGTATATCCGCATACGTATGAGACGAGTATATATATATATTCCCATATTC
CCGCCCAGAAACATCGGTTTTACTCAAAACTGTCAAGTGTAAATAAATGC
GACTTACTGTTATCTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA

GH07688.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7207-RA 2737 CG7207-RA 56..2580 1..2525 12595 99.9 Plus
CG7207.a 3368 CG7207.a 39..2563 1..2525 12595 99.9 Plus
nc_11308.a 511 nc_11308.a 343..511 1035..1203 845 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8274531..8275217 2518..1832 3435 100 Minus
chr3L 24539361 chr3L 8279830..8280225 827..432 1965 99.7 Minus
chr3L 24539361 chr3L 8275279..8275617 1832..1494 1665 99.4 Minus
chr3L 24539361 chr3L 8281182..8281498 434..118 1585 100 Minus
chr3L 24539361 chr3L 8275776..8276013 1493..1256 1175 99.6 Minus
chr3L 24539361 chr3L 8276072..8276298 1261..1035 1120 99.6 Minus
chr3L 24539361 chr3L 8279612..8279762 975..825 740 99.3 Minus
chr3L 24539361 chr3L 8281726..8281844 119..1 580 99.2 Minus
chr3L 24539361 chr3L 8279316..8279381 1037..972 315 98.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:36:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8282521..8283214 2525..1832 3455 99.9 Minus
3L 28110227 3L 8287827..8288222 827..432 1980 100 Minus
3L 28110227 3L 8283276..8283614 1832..1494 1695 100 Minus
3L 28110227 3L 8289169..8289485 434..118 1585 100 Minus
3L 28110227 3L 8283773..8284010 1493..1256 1175 99.6 Minus
3L 28110227 3L 8284069..8284295 1261..1035 1135 100 Minus
3L 28110227 3L 8287609..8287759 975..825 740 99.3 Minus
3L 28110227 3L 8289713..8289831 119..1 595 100 Minus
3L 28110227 3L 8287313..8287378 1037..972 315 98.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8275621..8276314 2525..1832 3455 99.8 Minus
3L 28103327 3L 8280927..8281322 827..432 1980 100 Minus
3L 28103327 3L 8276376..8276714 1832..1494 1695 100 Minus
3L 28103327 3L 8282269..8282585 434..118 1585 100 Minus
3L 28103327 3L 8276873..8277110 1493..1256 1175 99.5 Minus
3L 28103327 3L 8277169..8277395 1261..1035 1135 100 Minus
3L 28103327 3L 8280709..8280859 975..825 740 99.3 Minus
3L 28103327 3L 8282813..8282931 119..1 595 100 Minus
3L 28103327 3L 8280413..8280478 1037..972 315 98.4 Minus
Blast to na_te.dros performed on 2019-03-16 17:45:14 has no hits.

GH07688.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:46:12 Download gff for GH07688.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8274531..8275216 1833..2518 100 <- Minus
chr3L 8275279..8275617 1494..1832 99 <- Minus
chr3L 8275776..8276007 1262..1493 100 <- Minus
chr3L 8276072..8276296 1037..1261 99 <- Minus
chr3L 8279317..8279377 976..1036 100 <- Minus
chr3L 8279612..8279760 827..975 99 <- Minus
chr3L 8279831..8280223 434..826 99 <- Minus
chr3L 8281183..8281496 120..433 100 <- Minus
chr3L 8281726..8281844 1..119 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:24:07 Download gff for GH07688.complete
Subject Subject Range Query Range Percent Splice Strand
CG7207-RA 1..1806 155..1960 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:32:29 Download gff for GH07688.complete
Subject Subject Range Query Range Percent Splice Strand
cert-RA 1..1806 155..1960 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:00:47 Download gff for GH07688.complete
Subject Subject Range Query Range Percent Splice Strand
cert-RA 1..1806 155..1960 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:06:49 Download gff for GH07688.complete
Subject Subject Range Query Range Percent Splice Strand
CG7207-RA 1..1806 155..1960 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:05:42 Download gff for GH07688.complete
Subject Subject Range Query Range Percent Splice Strand
cert-RA 1..1806 155..1960 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:34:17 Download gff for GH07688.complete
Subject Subject Range Query Range Percent Splice Strand
CG7207-RA 27..2544 1..2518 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:32:29 Download gff for GH07688.complete
Subject Subject Range Query Range Percent Splice Strand
cert-RA 27..2544 1..2518 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:00:47 Download gff for GH07688.complete
Subject Subject Range Query Range Percent Splice Strand
cert-RA 89..2606 1..2518 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:06:49 Download gff for GH07688.complete
Subject Subject Range Query Range Percent Splice Strand
CG7207-RA 27..2544 1..2518 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:05:42 Download gff for GH07688.complete
Subject Subject Range Query Range Percent Splice Strand
cert-RA 40..2557 1..2518 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:12 Download gff for GH07688.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8287828..8288220 434..826 100 <- Minus
3L 8282528..8283213 1833..2518 100 <- Minus
3L 8283276..8283614 1494..1832 100 <- Minus
3L 8283773..8284004 1262..1493 100 <- Minus
3L 8284069..8284293 1037..1261 100 <- Minus
3L 8287314..8287374 976..1036 100 <- Minus
3L 8287609..8287757 827..975 99 <- Minus
3L 8289170..8289483 120..433 100 <- Minus
3L 8289713..8289831 1..119 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:12 Download gff for GH07688.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8287828..8288220 434..826 100 <- Minus
3L 8282528..8283213 1833..2518 100 <- Minus
3L 8283276..8283614 1494..1832 100 <- Minus
3L 8283773..8284004 1262..1493 100 <- Minus
3L 8284069..8284293 1037..1261 100 <- Minus
3L 8287314..8287374 976..1036 100 <- Minus
3L 8287609..8287757 827..975 99 <- Minus
3L 8289170..8289483 120..433 100 <- Minus
3L 8289713..8289831 1..119 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:12 Download gff for GH07688.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8287828..8288220 434..826 100 <- Minus
3L 8282528..8283213 1833..2518 100 <- Minus
3L 8283276..8283614 1494..1832 100 <- Minus
3L 8283773..8284004 1262..1493 100 <- Minus
3L 8284069..8284293 1037..1261 100 <- Minus
3L 8287314..8287374 976..1036 100 <- Minus
3L 8287609..8287757 827..975 99 <- Minus
3L 8289170..8289483 120..433 100 <- Minus
3L 8289713..8289831 1..119 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:00:47 Download gff for GH07688.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8280414..8280474 976..1036 100 <- Minus
arm_3L 8280709..8280857 827..975 99 <- Minus
arm_3L 8275628..8276313 1833..2518 100 <- Minus
arm_3L 8276376..8276714 1494..1832 100 <- Minus
arm_3L 8276873..8277104 1262..1493 100 <- Minus
arm_3L 8277169..8277393 1037..1261 100 <- Minus
arm_3L 8280928..8281320 434..826 100 <- Minus
arm_3L 8282270..8282583 120..433 100 <- Minus
arm_3L 8282813..8282931 1..119 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:44:27 Download gff for GH07688.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8275628..8276313 1833..2518 100 <- Minus
3L 8276376..8276714 1494..1832 100 <- Minus
3L 8276873..8277104 1262..1493 100 <- Minus
3L 8277169..8277393 1037..1261 100 <- Minus
3L 8280414..8280474 976..1036 100 <- Minus
3L 8280709..8280857 827..975 99 <- Minus
3L 8280928..8281320 434..826 100 <- Minus
3L 8282270..8282583 120..433 100 <- Minus
3L 8282813..8282931 1..119 100   Minus

GH07688.pep Sequence

Translation from 154 to 1959

> GH07688.pep
MDTNAGESLGASPPSSNEAAAGSQSQSDASEEEEYLDNSIELRGYLSKWT
NYIYGWQPRYIVLKDGTLSYYKSESESDFGCRGAISLTKATIKAHESDEL
RFDVVVNNLNNWCLRAETSEDRMHWVDVLQLYKADSGSTDTTSLRRHGST
MSLQSNTISLTSGGSLKKTQRNLREKVGELETFKDILFGQIETLQRYFDA
CSEVNKNNAQPLDLGDGLKSIDFKGESITFRATTSGVLTTLQHCLEIIAE
SDESWKRKLEREIDKRRRSEDQSKKLKDEVEKMKRLSYPGPDFEEGPHST
LPEDEFFDAVETGLDKIEEDMQLRFKLKLQSQISQTLVNVPHEAVAEGEE
AREEFGTGAEATSHALWPEIDRVCKEQLHYAREGVGQDGNGWQIFADEGE
IKMYKREEEVNGLVMDPLKAYHTVQGVTAREMCHYFFMPEFRNDWETTLE
DCTILEKISADTLLFLQTHKRIWPASQRDAQFWSHMRKITDNLEPGARDM
WVVCNNSTEYAKQESKNGKCVRIFLTVILACQTHLPEGYVKGQPLNRNDL
TCKITYCSVVNPGGWAPASALRAVYKREYPKFLKRFTGYVIDQCKDKPIM
F*

GH07688.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24695-PA 596 GF24695-PA 3..596 4..601 3147 97.5 Plus
Dana\GF18677-PA 788 GF18677-PA 9..289 41..317 229 26.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15099-PA 599 GG15099-PA 1..599 1..601 3225 99.3 Plus
Dere\Osbp-PA 783 GG12301-PA 16..283 41..313 231 28.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15976-PA 610 GH15976-PA 34..610 25..601 2934 92.2 Plus
Dgri\GH21515-PA 816 GH21515-PA 20..290 41..313 250 27.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
cert-PC 601 CG7207-PC 1..601 1..601 3180 100 Plus
cert-PA 601 CG7207-PA 1..601 1..601 3180 100 Plus
cert-PB 329 CG7207-PB 22..329 294..601 1662 99.7 Plus
Osbp-PA 784 CG6708-PA 16..283 41..313 247 28.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16626-PA 605 GI16626-PA 39..605 35..601 2910 93.3 Plus
Dmoj\GI10556-PA 792 GI10556-PA 18..316 41..336 239 26.3 Plus
Dmoj\GI10557-PA 572 GI10557-PA 26..152 5..134 172 32.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22557-PA 606 GL22557-PA 8..606 5..601 2471 78.9 Plus
Dper\GL23131-PA 783 GL23131-PA 16..294 41..314 225 26.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20179-PA 609 GA20179-PA 17..609 5..601 3082 95.3 Plus
Dpse\GA19801-PA 783 GA19801-PA 16..294 41..314 227 26.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24955-PA 601 GM24955-PA 1..601 1..601 3232 99.3 Plus
Dsec\GM23444-PA 784 GM23444-PA 16..283 41..313 234 27.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13006-PA 413 GD13006-PA 1..294 1..294 1523 99 Plus
Dsim\GD13006-PA 413 GD13006-PA 294..371 369..446 449 100 Plus
Dsim\GD13006-PA 413 GD13006-PA 372..413 560..601 243 97.6 Plus
Dsim\Osbp-PA 784 GD18250-PA 16..283 41..313 234 27.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12881-PA 600 GJ12881-PA 7..600 8..601 2967 90.7 Plus
Dvir\GJ22911-PA 793 GJ22911-PA 18..316 41..336 236 27.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17002-PA 626 GK17002-PA 34..626 15..601 2921 92.4 Plus
Dwil\GK14269-PA 793 GK14269-PA 26..346 41..357 229 25.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21322-PA 599 GE21322-PA 1..599 1..601 3230 99.5 Plus
Dyak\Osbp-PA 783 GE10756-PA 16..283 41..313 236 28.2 Plus

GH07688.hyp Sequence

Translation from 154 to 1959

> GH07688.hyp
MDTNAGESLGASPPSSNEAAAGSQSQSDASEEEEYLDNSIELRGYLSKWT
NYIYGWQPRYIVLKDGTLSYYKSESESDFGCRGAISLTKATIKAHESDEL
RFDVVVNNLNNWCLRAETSEDRMHWVDVLQLYKADSGSTDTTSLRRHGST
MSLQSNTISLTSGGSLKKTQRNLREKVGELETFKDILFGQIETLQRYFDA
CSEVNKNNAQPLDLGDGLKSIDFKGESITFRATTSGVLTTLQHCLEIIAE
SDESWKRKLEREIDKRRRSEDQSKKLKDEVEKMKRLSYPGPDFEEGPHST
LPEDEFFDAVETGLDKIEEDMQLRFKLKLQSQISQTLVNVPHEAVAEGEE
AREEFGTGAEATSHALWPEIDRVCKEQLHYAREGVGQDGNGWQIFADEGE
IKMYKREEEVNGLVMDPLKAYHTVQGVTAREMCHYFFMPEFRNDWETTLE
DCTILEKISADTLLFLQTHKRIWPASQRDAQFWSHMRKITDNLEPGARDM
WVVCNNSTEYAKQESKNGKCVRIFLTVILACQTHLPEGYVKGQPLNRNDL
TCKITYCSVVNPGGWAPASALRAVYKREYPKFLKRFTGYVIDQCKDKPIM
F*

GH07688.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
cert-PC 601 CG7207-PC 1..601 1..601 3180 100 Plus
cert-PA 601 CG7207-PA 1..601 1..601 3180 100 Plus
cert-PB 329 CG7207-PB 22..329 294..601 1662 99.7 Plus
Osbp-PA 784 CG6708-PA 16..283 41..313 247 28.2 Plus