Clone GH07816 Report

Search the DGRC for GH07816

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:78
Well:16
Vector:pOT2
Associated Gene/TranscriptAtg18b-RA
Protein status:GH07816.pep: gold
Preliminary Size:2095
Sequenced Size:2075

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8678 2001-01-01 Release 2 assignment
CG8679 2001-01-01 Release 2 assignment
CG8678 2001-12-12 Blastp of sequenced clone
CG8678 2003-01-01 Sim4 clustering to Release 3
CG8678 2008-04-29 Release 5.5 accounting
CG8678 2008-08-15 Release 5.9 accounting
CG8678 2008-12-18 5.12 accounting

Clone Sequence Records

GH07816.complete Sequence

2075 bp (2075 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070498

> GH07816.complete
CAAAGACGACGCAAAACAGTCGAATTTAGTTTTCAATATCAAGTGAAATC
ATTTCGCTTTGCTCATCTGCCATCGTCGATCAATATCTTGTGTACTCAAA
CGACGGGACTCTGCAACTGAATATCGCTGAAAAAAAGCATCTAAAGACCA
GTGAAAGTGTAACTATATAAAAAAAATACAATCACCAAAGCACAAATCTT
CAGCAGCAATGACCACATATCAAATGAACTTCAACCAGGACTTTACTTCC
CTGTCCGTGCTGAGCCCCACGGGTCTACGCCTGTTCTCGATTTCTAGCCA
GGACAAGGTGGAGGAGATATTCGCCAAGGACAACACGGAGCAAATCCGAA
TCGTGGAGCGCCTGTTCAACAGCTCACTAGTAGTGCTGGTCACCGCCCAG
AAGCCCAACTGCCTCAAGATGCTGCACTTTAAGAAGAAGCAGGACATCTG
TAACTGCTTTTACCCGTCGGAGATCCTGTGCGTCCGCATGAACCGCCAAC
GCCTGATCGTCTGCCTGGCGGAGAGCATACACATCCACGACATCCGCGAC
ATGAAGATCCTGCACTCCATCGAGAACATCGCTCCCAACGAGCAGGGTCT
ATGCGCCCTCTCCCTCAACTCGCACCTGGCCTTCCCAGTCTGCCAAACGA
GCGGCGAGCTGCGCATCTTTAACGCCAGCAAGCTGCGCACGGGCATGACC
ATCAGGGCCCACGACACGTCCCTCTCAGCTCTCGCTTTCTCGCCCAGCGG
AGCTCTGCTGGCCACCGCCTCCGAGCGCGGGACCGTCATCCGGGTCTTTT
GTGTAAAAAATGGCCAGCGGGTGCAGGAATTCCGGAGGGGCGTCAGCTGT
GTCCGCATTGCCTCACTGGTCTTCTCGGCCAGTGGAGACTTCCTCTGCGC
CTCCTCCAACACGGAGACCGTCCACGTTTTCAAGATCGATACGCGGGCAG
TGGAGACGGTTGAGCTGAAAGCGATAGCCGATGTAGCTGCCAAGTCCGAA
AATTCTGCCAAGGAAGCAGTGGCATCCACAGCAGCAGAGGAGAGCTGTAG
ACCTGTCGCTTCCTGGGGCGGAATGTTTTCCAAGGCTGTGTCATCTTTGC
TGCTGCCCACGCAAGTCAGCGAAGTATTAGCTCAGGACCGATCCTTTGCT
ACGGTGCAGCTGGCTCAGGGCGGCCTAAAGCACATCTGTGCCCTGACCCG
TGTTCAGAAGGAGCCACGTCTGCTGATTGCGTGCGAGGACGGATTCCTGT
ACGTGCACGAGTTTCCTGCGGAACGGGGTGGTCCCTGTAAACTGATGTCT
GTCCACGACTTGCGCGGAGCCCTGGAGGATGTAATAGAGCTTGAGCTGAG
CGAAAGCGTGCAAAGGTCGCAGACTAAGCCTTCGAATCCGTCAACTGTGA
CGCAGCCTTCGCTTACGATGCTAAAGAGCTGTGCGGCTAGTGTGCTCATC
GAGAATCCGGATCCGATGCAAGACAACAGCTATGCAAGCATCCTGAAAGG
TGACCAGGCAGATGCAATGTCTGATTCTGCCAAGTTTCGCAAGCTTTGCG
ATGCCATCGACACTCCAACAAAGCTCTACGATGAGCGACAATTTCCTCCA
GTGGCAATTACCGCTAAGGATTGACTACGTAACCGTAACATCAAGGATAT
GGTTCGAGATAATAGACAGCAGAATTTTTAAGCAACATTAGTTAATTCAC
CTTAGCCAAGACGCCCCAAACAATCGTTATTTATATCTACCGAAACTTTC
TATATTAAGCGAAAATACTCGTTTGAAAAGTATTTTATTTTATATGAAGC
ATCCCTTAAAATGTACATCTATGGATGTATGTATGTATATAGAAATGTAC
CTAAAAGAATTTCACATAAAAATCTAGATATTCTTGTGTTAGTTTATTTT
TGCCCTAAACCTTAGGCACTAAATCAAACTCTGTATCCTTTAGAAACGTA
GGTATAAGTGTATAAAATTACATAATAAAATTGTGCGGTAGAAGCTCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA

GH07816.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8678.a 2572 CG8678.a 463..2464 1..2002 10010 100 Plus
CG8678-RA 2370 CG8678-RA 261..2262 1..2002 10010 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 21212449..21213179 977..247 3655 100 Minus
chr2L 23010047 chr2L 21211755..21212303 1523..975 2745 100 Minus
chr2L 23010047 chr2L 21211225..21211699 1997..1523 2375 100 Minus
chr2L 23010047 chr2L 21218792..21219037 246..1 1215 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:37:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21213917..21214647 977..247 3655 100 Minus
2L 23513712 2L 21213223..21213771 1523..975 2745 100 Minus
2L 23513712 2L 21212688..21213167 2002..1523 2400 100 Minus
2L 23513712 2L 21220260..21220505 246..1 1230 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21213917..21214647 977..247 3655 100 Minus
2L 23513712 2L 21213223..21213771 1523..975 2745 100 Minus
2L 23513712 2L 21212688..21213167 2002..1523 2400 100 Minus
2L 23513712 2L 21220260..21220505 246..1 1230 100 Minus
Blast to na_te.dros performed 2019-03-15 12:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1414..1554 1890..1748 132 58.3 Minus
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 668..775 1805..1909 119 58.3 Plus

GH07816.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:31:01 Download gff for GH07816.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 21211225..21211698 1524..1997 100 <- Minus
chr2L 21211755..21212300 978..1523 100 <- Minus
chr2L 21212449..21213179 247..977 100 <- Minus
chr2L 21218792..21219037 1..246 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:24:48 Download gff for GH07816.complete
Subject Subject Range Query Range Percent Splice Strand
CG8678-RA 1..1416 209..1624 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:19:10 Download gff for GH07816.complete
Subject Subject Range Query Range Percent Splice Strand
CG8678-RA 1..1416 209..1624 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:43:36 Download gff for GH07816.complete
Subject Subject Range Query Range Percent Splice Strand
CG8678-RA 1..1416 209..1624 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:45:17 Download gff for GH07816.complete
Subject Subject Range Query Range Percent Splice Strand
CG8678-RA 1..1416 209..1624 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:00:41 Download gff for GH07816.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18b-RA 1..1416 209..1624 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:52:28 Download gff for GH07816.complete
Subject Subject Range Query Range Percent Splice Strand
CG8678-RA 63..2059 1..1997 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:19:10 Download gff for GH07816.complete
Subject Subject Range Query Range Percent Splice Strand
CG8678-RA 63..2059 1..1997 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:43:36 Download gff for GH07816.complete
Subject Subject Range Query Range Percent Splice Strand
CG8678-RA 68..2064 1..1997 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:45:17 Download gff for GH07816.complete
Subject Subject Range Query Range Percent Splice Strand
CG8678-RA 63..2059 1..1997 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:00:41 Download gff for GH07816.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18b-RA 68..2064 1..1997 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:31:01 Download gff for GH07816.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21212693..21213166 1524..1997 100 <- Minus
2L 21213223..21213768 978..1523 100 <- Minus
2L 21213917..21214647 247..977 100 <- Minus
2L 21220260..21220505 1..246 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:31:01 Download gff for GH07816.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21212693..21213166 1524..1997 100 <- Minus
2L 21213223..21213768 978..1523 100 <- Minus
2L 21213917..21214647 247..977 100 <- Minus
2L 21220260..21220505 1..246 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:31:01 Download gff for GH07816.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21212693..21213166 1524..1997 100 <- Minus
2L 21213223..21213768 978..1523 100 <- Minus
2L 21213917..21214647 247..977 100 <- Minus
2L 21220260..21220505 1..246 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:43:36 Download gff for GH07816.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21212693..21213166 1524..1997 100 <- Minus
arm_2L 21213223..21213768 978..1523 100 <- Minus
arm_2L 21213917..21214647 247..977 100 <- Minus
arm_2L 21220260..21220505 1..246 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:21:40 Download gff for GH07816.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21212693..21213166 1524..1997 100 <- Minus
2L 21213223..21213768 978..1523 100 <- Minus
2L 21213917..21214647 247..977 100 <- Minus
2L 21220260..21220505 1..246 100   Minus

GH07816.hyp Sequence

Translation from 208 to 1623

> GH07816.hyp
MTTYQMNFNQDFTSLSVLSPTGLRLFSISSQDKVEEIFAKDNTEQIRIVE
RLFNSSLVVLVTAQKPNCLKMLHFKKKQDICNCFYPSEILCVRMNRQRLI
VCLAESIHIHDIRDMKILHSIENIAPNEQGLCALSLNSHLAFPVCQTSGE
LRIFNASKLRTGMTIRAHDTSLSALAFSPSGALLATASERGTVIRVFCVK
NGQRVQEFRRGVSCVRIASLVFSASGDFLCASSNTETVHVFKIDTRAVET
VELKAIADVAAKSENSAKEAVASTAAEESCRPVASWGGMFSKAVSSLLLP
TQVSEVLAQDRSFATVQLAQGGLKHICALTRVQKEPRLLIACEDGFLYVH
EFPAERGGPCKLMSVHDLRGALEDVIELELSESVQRSQTKPSNPSTVTQP
SLTMLKSCAASVLIENPDPMQDNSYASILKGDQADAMSDSAKFRKLCDAI
DTPTKLYDERQFPPVAITAKD*

GH07816.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18b-PB 471 CG8678-PB 1..471 1..471 2381 100 Plus
Atg18b-PA 471 CG8678-PA 1..471 1..471 2381 100 Plus
Atg18a-PD 435 CG7986-PD 17..427 6..432 812 42.8 Plus
Atg18a-PF 372 CG7986-PF 17..369 6..380 807 45.9 Plus
Atg18a-PG 377 CG7986-PG 17..374 6..380 794 45.6 Plus

GH07816.pep Sequence

Translation from 208 to 1623

> GH07816.pep
MTTYQMNFNQDFTSLSVLSPTGLRLFSISSQDKVEEIFAKDNTEQIRIVE
RLFNSSLVVLVTAQKPNCLKMLHFKKKQDICNCFYPSEILCVRMNRQRLI
VCLAESIHIHDIRDMKILHSIENIAPNEQGLCALSLNSHLAFPVCQTSGE
LRIFNASKLRTGMTIRAHDTSLSALAFSPSGALLATASERGTVIRVFCVK
NGQRVQEFRRGVSCVRIASLVFSASGDFLCASSNTETVHVFKIDTRAVET
VELKAIADVAAKSENSAKEAVASTAAEESCRPVASWGGMFSKAVSSLLLP
TQVSEVLAQDRSFATVQLAQGGLKHICALTRVQKEPRLLIACEDGFLYVH
EFPAERGGPCKLMSVHDLRGALEDVIELELSESVQRSQTKPSNPSTVTQP
SLTMLKSCAASVLIENPDPMQDNSYASILKGDQADAMSDSAKFRKLCDAI
DTPTKLYDERQFPPVAITAKD*

GH07816.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15570-PA 472 GF15570-PA 11..472 14..471 2100 85.7 Plus
Dana\GF25099-PA 433 GF25099-PA 18..369 7..380 844 46 Plus
Dana\GF16573-PA 340 GF16573-PA 18..260 8..244 224 29 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:17:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21513-PA 471 GG21513-PA 1..471 1..471 2448 97 Plus
Dere\GG14476-PA 435 GG14476-PA 17..369 6..380 854 45.9 Plus
Dere\GG14096-PA 340 GG14096-PA 18..260 8..244 226 29 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11033-PA 479 GH11033-PA 3..479 13..471 1980 81.2 Plus
Dgri\GH15493-PA 437 GH15493-PA 17..367 6..380 832 44.6 Plus
Dgri\GH19377-PA 340 GH19377-PA 18..260 8..244 237 29.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18b-PB 471 CG8678-PB 1..471 1..471 2381 100 Plus
Atg18b-PA 471 CG8678-PA 1..471 1..471 2381 100 Plus
Atg18a-PD 435 CG7986-PD 17..427 6..432 812 42.8 Plus
Atg18a-PF 372 CG7986-PF 17..369 6..380 807 45.9 Plus
Atg18a-PE 447 CG7986-PE 17..439 6..432 796 41.9 Plus
Atg18a-PG 377 CG7986-PG 17..374 6..380 794 45.6 Plus
Atg18a-PC 377 CG7986-PC 17..374 6..380 794 45.6 Plus
Atg18a-PB 377 CG7986-PB 17..374 6..380 794 45.6 Plus
Atg18a-PA 377 CG7986-PA 17..374 6..380 794 45.6 Plus
CG11975-PB 340 CG11975-PB 18..260 8..244 229 27.2 Plus
CG11975-PA 340 CG11975-PA 18..260 8..244 229 27.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17552-PA 462 GI17552-PA 3..462 13..471 2030 83.2 Plus
Dmoj\GI16769-PA 431 GI16769-PA 17..367 6..380 806 45.1 Plus
Dmoj\GI22579-PA 340 GI22579-PA 18..260 8..244 239 29.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26366-PA 505 GL26366-PA 55..505 20..471 2089 87.3 Plus
Dper\GL22534-PA 444 GL22534-PA 17..367 6..380 842 45.9 Plus
Dper\GL12110-PA 340 GL12110-PA 18..260 8..244 235 29.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21256-PA 470 GA21256-PA 1..470 1..471 2181 87.2 Plus
Dpse\GA20742-PA 442 GA20742-PA 17..367 6..380 842 45.9 Plus
Dpse\GA11305-PA 340 GA11305-PA 18..260 8..244 235 29.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23265-PA 471 GM23265-PA 1..471 1..471 2445 97.5 Plus
Dsec\GM25025-PA 435 GM25025-PA 17..369 6..380 860 46.4 Plus
Dsec\GM23775-PA 340 GM23775-PA 18..260 8..244 226 29 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21643-PA 549 GD21643-PA 92..549 14..471 2369 97.8 Plus
Dsim\GD14059-PA 435 GD14059-PA 17..369 6..380 856 46.2 Plus
Dsim\GD18585-PA 340 GD18585-PA 18..260 8..244 226 29 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15537-PA 470 GJ15537-PA 5..470 13..471 2017 83.5 Plus
Dvir\GJ12513-PA 443 GJ12513-PA 17..367 6..380 823 44.6 Plus
Dvir\GJ10301-PA 340 GJ10301-PA 18..267 8..250 238 29.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14682-PA 474 GK14682-PA 3..474 14..471 2037 83.6 Plus
Dwil\GK11999-PA 451 GK11999-PA 17..367 6..380 837 45.4 Plus
Dwil\GK11674-PA 340 GK11674-PA 18..259 8..243 236 30 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12992-PA 471 GE12992-PA 1..471 1..471 2449 97 Plus
Dyak\GE21663-PA 435 GE21663-PA 17..427 6..432 856 42.8 Plus
Dyak\GE25918-PA 340 GE25918-PA 18..260 8..244 226 29 Plus