BDGP Sequence Production Resources |
Search the DGRC for GH07816
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 78 |
Well: | 16 |
Vector: | pOT2 |
Associated Gene/Transcript | Atg18b-RA |
Protein status: | GH07816.pep: gold |
Preliminary Size: | 2095 |
Sequenced Size: | 2075 |
Gene | Date | Evidence |
---|---|---|
CG8678 | 2001-01-01 | Release 2 assignment |
CG8679 | 2001-01-01 | Release 2 assignment |
CG8678 | 2001-12-12 | Blastp of sequenced clone |
CG8678 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8678 | 2008-04-29 | Release 5.5 accounting |
CG8678 | 2008-08-15 | Release 5.9 accounting |
CG8678 | 2008-12-18 | 5.12 accounting |
2075 bp (2075 high quality bases) assembled on 2001-12-12
GenBank Submission: AY070498
> GH07816.complete CAAAGACGACGCAAAACAGTCGAATTTAGTTTTCAATATCAAGTGAAATC ATTTCGCTTTGCTCATCTGCCATCGTCGATCAATATCTTGTGTACTCAAA CGACGGGACTCTGCAACTGAATATCGCTGAAAAAAAGCATCTAAAGACCA GTGAAAGTGTAACTATATAAAAAAAATACAATCACCAAAGCACAAATCTT CAGCAGCAATGACCACATATCAAATGAACTTCAACCAGGACTTTACTTCC CTGTCCGTGCTGAGCCCCACGGGTCTACGCCTGTTCTCGATTTCTAGCCA GGACAAGGTGGAGGAGATATTCGCCAAGGACAACACGGAGCAAATCCGAA TCGTGGAGCGCCTGTTCAACAGCTCACTAGTAGTGCTGGTCACCGCCCAG AAGCCCAACTGCCTCAAGATGCTGCACTTTAAGAAGAAGCAGGACATCTG TAACTGCTTTTACCCGTCGGAGATCCTGTGCGTCCGCATGAACCGCCAAC GCCTGATCGTCTGCCTGGCGGAGAGCATACACATCCACGACATCCGCGAC ATGAAGATCCTGCACTCCATCGAGAACATCGCTCCCAACGAGCAGGGTCT ATGCGCCCTCTCCCTCAACTCGCACCTGGCCTTCCCAGTCTGCCAAACGA GCGGCGAGCTGCGCATCTTTAACGCCAGCAAGCTGCGCACGGGCATGACC ATCAGGGCCCACGACACGTCCCTCTCAGCTCTCGCTTTCTCGCCCAGCGG AGCTCTGCTGGCCACCGCCTCCGAGCGCGGGACCGTCATCCGGGTCTTTT GTGTAAAAAATGGCCAGCGGGTGCAGGAATTCCGGAGGGGCGTCAGCTGT GTCCGCATTGCCTCACTGGTCTTCTCGGCCAGTGGAGACTTCCTCTGCGC CTCCTCCAACACGGAGACCGTCCACGTTTTCAAGATCGATACGCGGGCAG TGGAGACGGTTGAGCTGAAAGCGATAGCCGATGTAGCTGCCAAGTCCGAA AATTCTGCCAAGGAAGCAGTGGCATCCACAGCAGCAGAGGAGAGCTGTAG ACCTGTCGCTTCCTGGGGCGGAATGTTTTCCAAGGCTGTGTCATCTTTGC TGCTGCCCACGCAAGTCAGCGAAGTATTAGCTCAGGACCGATCCTTTGCT ACGGTGCAGCTGGCTCAGGGCGGCCTAAAGCACATCTGTGCCCTGACCCG TGTTCAGAAGGAGCCACGTCTGCTGATTGCGTGCGAGGACGGATTCCTGT ACGTGCACGAGTTTCCTGCGGAACGGGGTGGTCCCTGTAAACTGATGTCT GTCCACGACTTGCGCGGAGCCCTGGAGGATGTAATAGAGCTTGAGCTGAG CGAAAGCGTGCAAAGGTCGCAGACTAAGCCTTCGAATCCGTCAACTGTGA CGCAGCCTTCGCTTACGATGCTAAAGAGCTGTGCGGCTAGTGTGCTCATC GAGAATCCGGATCCGATGCAAGACAACAGCTATGCAAGCATCCTGAAAGG TGACCAGGCAGATGCAATGTCTGATTCTGCCAAGTTTCGCAAGCTTTGCG ATGCCATCGACACTCCAACAAAGCTCTACGATGAGCGACAATTTCCTCCA GTGGCAATTACCGCTAAGGATTGACTACGTAACCGTAACATCAAGGATAT GGTTCGAGATAATAGACAGCAGAATTTTTAAGCAACATTAGTTAATTCAC CTTAGCCAAGACGCCCCAAACAATCGTTATTTATATCTACCGAAACTTTC TATATTAAGCGAAAATACTCGTTTGAAAAGTATTTTATTTTATATGAAGC ATCCCTTAAAATGTACATCTATGGATGTATGTATGTATATAGAAATGTAC CTAAAAGAATTTCACATAAAAATCTAGATATTCTTGTGTTAGTTTATTTT TGCCCTAAACCTTAGGCACTAAATCAAACTCTGTATCCTTTAGAAACGTA GGTATAAGTGTATAAAATTACATAATAAAATTGTGCGGTAGAAGCTCAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 21212449..21213179 | 977..247 | 3655 | 100 | Minus |
chr2L | 23010047 | chr2L | 21211755..21212303 | 1523..975 | 2745 | 100 | Minus |
chr2L | 23010047 | chr2L | 21211225..21211699 | 1997..1523 | 2375 | 100 | Minus |
chr2L | 23010047 | chr2L | 21218792..21219037 | 246..1 | 1215 | 99.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 21213917..21214647 | 977..247 | 3655 | 100 | Minus |
2L | 23513712 | 2L | 21213223..21213771 | 1523..975 | 2745 | 100 | Minus |
2L | 23513712 | 2L | 21212688..21213167 | 2002..1523 | 2400 | 100 | Minus |
2L | 23513712 | 2L | 21220260..21220505 | 246..1 | 1230 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 21213917..21214647 | 977..247 | 3655 | 100 | Minus |
2L | 23513712 | 2L | 21213223..21213771 | 1523..975 | 2745 | 100 | Minus |
2L | 23513712 | 2L | 21212688..21213167 | 2002..1523 | 2400 | 100 | Minus |
2L | 23513712 | 2L | 21220260..21220505 | 246..1 | 1230 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 21211225..21211698 | 1524..1997 | 100 | <- | Minus |
chr2L | 21211755..21212300 | 978..1523 | 100 | <- | Minus |
chr2L | 21212449..21213179 | 247..977 | 100 | <- | Minus |
chr2L | 21218792..21219037 | 1..246 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8678-RA | 1..1416 | 209..1624 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8678-RA | 1..1416 | 209..1624 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8678-RA | 1..1416 | 209..1624 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8678-RA | 1..1416 | 209..1624 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg18b-RA | 1..1416 | 209..1624 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8678-RA | 63..2059 | 1..1997 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8678-RA | 63..2059 | 1..1997 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8678-RA | 68..2064 | 1..1997 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8678-RA | 63..2059 | 1..1997 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg18b-RA | 68..2064 | 1..1997 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 21212693..21213166 | 1524..1997 | 100 | <- | Minus |
2L | 21213223..21213768 | 978..1523 | 100 | <- | Minus |
2L | 21213917..21214647 | 247..977 | 100 | <- | Minus |
2L | 21220260..21220505 | 1..246 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 21212693..21213166 | 1524..1997 | 100 | <- | Minus |
2L | 21213223..21213768 | 978..1523 | 100 | <- | Minus |
2L | 21213917..21214647 | 247..977 | 100 | <- | Minus |
2L | 21220260..21220505 | 1..246 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 21212693..21213166 | 1524..1997 | 100 | <- | Minus |
2L | 21213223..21213768 | 978..1523 | 100 | <- | Minus |
2L | 21213917..21214647 | 247..977 | 100 | <- | Minus |
2L | 21220260..21220505 | 1..246 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 21212693..21213166 | 1524..1997 | 100 | <- | Minus |
arm_2L | 21213223..21213768 | 978..1523 | 100 | <- | Minus |
arm_2L | 21213917..21214647 | 247..977 | 100 | <- | Minus |
arm_2L | 21220260..21220505 | 1..246 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 21212693..21213166 | 1524..1997 | 100 | <- | Minus |
2L | 21213223..21213768 | 978..1523 | 100 | <- | Minus |
2L | 21213917..21214647 | 247..977 | 100 | <- | Minus |
2L | 21220260..21220505 | 1..246 | 100 | Minus |
Translation from 208 to 1623
> GH07816.hyp MTTYQMNFNQDFTSLSVLSPTGLRLFSISSQDKVEEIFAKDNTEQIRIVE RLFNSSLVVLVTAQKPNCLKMLHFKKKQDICNCFYPSEILCVRMNRQRLI VCLAESIHIHDIRDMKILHSIENIAPNEQGLCALSLNSHLAFPVCQTSGE LRIFNASKLRTGMTIRAHDTSLSALAFSPSGALLATASERGTVIRVFCVK NGQRVQEFRRGVSCVRIASLVFSASGDFLCASSNTETVHVFKIDTRAVET VELKAIADVAAKSENSAKEAVASTAAEESCRPVASWGGMFSKAVSSLLLP TQVSEVLAQDRSFATVQLAQGGLKHICALTRVQKEPRLLIACEDGFLYVH EFPAERGGPCKLMSVHDLRGALEDVIELELSESVQRSQTKPSNPSTVTQP SLTMLKSCAASVLIENPDPMQDNSYASILKGDQADAMSDSAKFRKLCDAI DTPTKLYDERQFPPVAITAKD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Atg18b-PB | 471 | CG8678-PB | 1..471 | 1..471 | 2381 | 100 | Plus |
Atg18b-PA | 471 | CG8678-PA | 1..471 | 1..471 | 2381 | 100 | Plus |
Atg18a-PD | 435 | CG7986-PD | 17..427 | 6..432 | 812 | 42.8 | Plus |
Atg18a-PF | 372 | CG7986-PF | 17..369 | 6..380 | 807 | 45.9 | Plus |
Atg18a-PG | 377 | CG7986-PG | 17..374 | 6..380 | 794 | 45.6 | Plus |
Translation from 208 to 1623
> GH07816.pep MTTYQMNFNQDFTSLSVLSPTGLRLFSISSQDKVEEIFAKDNTEQIRIVE RLFNSSLVVLVTAQKPNCLKMLHFKKKQDICNCFYPSEILCVRMNRQRLI VCLAESIHIHDIRDMKILHSIENIAPNEQGLCALSLNSHLAFPVCQTSGE LRIFNASKLRTGMTIRAHDTSLSALAFSPSGALLATASERGTVIRVFCVK NGQRVQEFRRGVSCVRIASLVFSASGDFLCASSNTETVHVFKIDTRAVET VELKAIADVAAKSENSAKEAVASTAAEESCRPVASWGGMFSKAVSSLLLP TQVSEVLAQDRSFATVQLAQGGLKHICALTRVQKEPRLLIACEDGFLYVH EFPAERGGPCKLMSVHDLRGALEDVIELELSESVQRSQTKPSNPSTVTQP SLTMLKSCAASVLIENPDPMQDNSYASILKGDQADAMSDSAKFRKLCDAI DTPTKLYDERQFPPVAITAKD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15570-PA | 472 | GF15570-PA | 11..472 | 14..471 | 2100 | 85.7 | Plus |
Dana\GF25099-PA | 433 | GF25099-PA | 18..369 | 7..380 | 844 | 46 | Plus |
Dana\GF16573-PA | 340 | GF16573-PA | 18..260 | 8..244 | 224 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21513-PA | 471 | GG21513-PA | 1..471 | 1..471 | 2448 | 97 | Plus |
Dere\GG14476-PA | 435 | GG14476-PA | 17..369 | 6..380 | 854 | 45.9 | Plus |
Dere\GG14096-PA | 340 | GG14096-PA | 18..260 | 8..244 | 226 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11033-PA | 479 | GH11033-PA | 3..479 | 13..471 | 1980 | 81.2 | Plus |
Dgri\GH15493-PA | 437 | GH15493-PA | 17..367 | 6..380 | 832 | 44.6 | Plus |
Dgri\GH19377-PA | 340 | GH19377-PA | 18..260 | 8..244 | 237 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Atg18b-PB | 471 | CG8678-PB | 1..471 | 1..471 | 2381 | 100 | Plus |
Atg18b-PA | 471 | CG8678-PA | 1..471 | 1..471 | 2381 | 100 | Plus |
Atg18a-PD | 435 | CG7986-PD | 17..427 | 6..432 | 812 | 42.8 | Plus |
Atg18a-PF | 372 | CG7986-PF | 17..369 | 6..380 | 807 | 45.9 | Plus |
Atg18a-PE | 447 | CG7986-PE | 17..439 | 6..432 | 796 | 41.9 | Plus |
Atg18a-PG | 377 | CG7986-PG | 17..374 | 6..380 | 794 | 45.6 | Plus |
Atg18a-PC | 377 | CG7986-PC | 17..374 | 6..380 | 794 | 45.6 | Plus |
Atg18a-PB | 377 | CG7986-PB | 17..374 | 6..380 | 794 | 45.6 | Plus |
Atg18a-PA | 377 | CG7986-PA | 17..374 | 6..380 | 794 | 45.6 | Plus |
CG11975-PB | 340 | CG11975-PB | 18..260 | 8..244 | 229 | 27.2 | Plus |
CG11975-PA | 340 | CG11975-PA | 18..260 | 8..244 | 229 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17552-PA | 462 | GI17552-PA | 3..462 | 13..471 | 2030 | 83.2 | Plus |
Dmoj\GI16769-PA | 431 | GI16769-PA | 17..367 | 6..380 | 806 | 45.1 | Plus |
Dmoj\GI22579-PA | 340 | GI22579-PA | 18..260 | 8..244 | 239 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26366-PA | 505 | GL26366-PA | 55..505 | 20..471 | 2089 | 87.3 | Plus |
Dper\GL22534-PA | 444 | GL22534-PA | 17..367 | 6..380 | 842 | 45.9 | Plus |
Dper\GL12110-PA | 340 | GL12110-PA | 18..260 | 8..244 | 235 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21256-PA | 470 | GA21256-PA | 1..470 | 1..471 | 2181 | 87.2 | Plus |
Dpse\GA20742-PA | 442 | GA20742-PA | 17..367 | 6..380 | 842 | 45.9 | Plus |
Dpse\GA11305-PA | 340 | GA11305-PA | 18..260 | 8..244 | 235 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23265-PA | 471 | GM23265-PA | 1..471 | 1..471 | 2445 | 97.5 | Plus |
Dsec\GM25025-PA | 435 | GM25025-PA | 17..369 | 6..380 | 860 | 46.4 | Plus |
Dsec\GM23775-PA | 340 | GM23775-PA | 18..260 | 8..244 | 226 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21643-PA | 549 | GD21643-PA | 92..549 | 14..471 | 2369 | 97.8 | Plus |
Dsim\GD14059-PA | 435 | GD14059-PA | 17..369 | 6..380 | 856 | 46.2 | Plus |
Dsim\GD18585-PA | 340 | GD18585-PA | 18..260 | 8..244 | 226 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15537-PA | 470 | GJ15537-PA | 5..470 | 13..471 | 2017 | 83.5 | Plus |
Dvir\GJ12513-PA | 443 | GJ12513-PA | 17..367 | 6..380 | 823 | 44.6 | Plus |
Dvir\GJ10301-PA | 340 | GJ10301-PA | 18..267 | 8..250 | 238 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14682-PA | 474 | GK14682-PA | 3..474 | 14..471 | 2037 | 83.6 | Plus |
Dwil\GK11999-PA | 451 | GK11999-PA | 17..367 | 6..380 | 837 | 45.4 | Plus |
Dwil\GK11674-PA | 340 | GK11674-PA | 18..259 | 8..243 | 236 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12992-PA | 471 | GE12992-PA | 1..471 | 1..471 | 2449 | 97 | Plus |
Dyak\GE21663-PA | 435 | GE21663-PA | 17..427 | 6..432 | 856 | 42.8 | Plus |
Dyak\GE25918-PA | 340 | GE25918-PA | 18..260 | 8..244 | 226 | 29 | Plus |