Clone GH07821 Report

Search the DGRC for GH07821

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:78
Well:21
Vector:pOT2
Associated Gene/TranscriptmRpS22-RA
Protein status:GH07821.pep: gold
Preliminary Size:1300
Sequenced Size:1367

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12261 2001-01-01 Release 2 assignment
CG12261 2003-01-01 Sim4 clustering to Release 3
CG12261 2004-08-12 Blastp of sequenced clone
mRpS22 2008-04-29 Release 5.5 accounting
mRpS22 2008-08-15 Release 5.9 accounting
mRpS22 2008-12-18 5.12 accounting

Clone Sequence Records

GH07821.complete Sequence

1367 bp (1367 high quality bases) assembled on 2004-08-12

GenBank Submission: BT021953

> GH07821.complete
AAAACACCGTGCTGCCCTCACTAATTTCTACACCCGTCTCGTGTATTTTT
GTGCCTGATTTACTGACTGAAAATGCACCTGCTGCGGAGCCTGCGCCAGC
TGAATGGCCTCCAAGGAGTGCGCCAAGCTATCCGGCAGGTGTCCTCGGCG
CCCACCAAGCCCGCCGCCCTGCAGTACGAGCGCGATCCGCAGCCGCTTTT
CACGGATGCCGAAACCCAGCGGCTGCTCCAGTCCATGACGCAACTGAACT
TGGACAAGGTGTATCGGAAGCGCACGGTGCCGGACAACAGCAGCGAAACG
AAGTTCATGAGCAACGAGCAGCTGGACAACGAGTTCCAGAACTTGGTGGT
GCGGGCTCAGCAAATTCTGCAAATGCCACCCATTGTGCAGATCAAAAAAG
ATGTGGAGCGGGTGATAGCCAAGGATACGGCGCTGAAGGACTTCGCCAAC
TCCAAGTTCGTATTCACGGACATCACCTTCGGCCGACGGCAGTCGGAACG
CAAGGTAATCGTCCGGGATATGGACGGAACCTTGGCCTACGCCACTCTTG
ATACCACGAAGCGCATGAACCAGTTGTATTTCCCGCTGGAGGGTCGCCAG
TCATATACTCCACGAATGTTCGCGCTGGAGGAGCTGCTGGCCAAGTGCTT
GGCGGAGCACAAGTACGAGTTCATCCTGGATCGACTCTTGGTGCAGTACG
AGCCACATGAGCCGGAGTTCCACAACATTTCAGCGCGTGTGTTCGAGCAT
CTCAACGAGTCCAAGGAGTTCGATCTTCTGCGCTCCACCCGCCACTTTGG
ACCCATGGCCTTCTTCTACGCTTGGCACCGCTGCATCGACGACCTGCTGT
ATGACATGATCCGTCGGGATTATCTGCACAATGCCGTGGAGCTGATTGCT
CTGAGCTACAAGCTACACAACATCCCAGTGGAGTATCAGGCAACGCTGAC
CGAACTGGGCAAACTGCATGCCACGCCGGCGGAAAGTGCCCTGGCGGAGC
TAAGAAGCGTCTTCCGACGACATGACAATAAGCAGAACATTGAGCAGGAG
ATCCATACGGCCATTGGCAAGACGGAGCACGATTTCGCCGCCGATGAGAT
CAGCCTGAAGTTCATTGAGCAGTACATCGCCAGCGAACATGCGCTGAAGA
AGGTGCAACTGGAGCTGGCGGTGCAGACGCTTAAGGAAGTTAACCGGGAG
AAACTGATGCTGTTCCAGGGACTGAAAAAGGCTCACGGCGTCCAGGCTTC
GTAGGATCTATTCGCTTTATTGTTATCGATTTCTATGTACTAATAAATAC
CAGCTAGGTCAAGATTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA

GH07821.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS22-RA 1340 mRpS22-RA 22..1340 1..1319 6595 100 Plus
CG33213-RA 1269 CG33213-RA 1197..1269 1320..1248 365 100 Minus
CG33221-RA 1399 CG33221-RA 1326..1395 1317..1248 320 97.1 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 23739891..23741209 1..1319 6505 99.5 Plus
chrX 22417052 chrX 3690897..3690966 1248..1317 320 97.1 Plus
chrU 10048995 chrU 6016770..6016839 1317..1248 320 97.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 16:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
CR42196-RA 1399 CR42196-RA 1326..1395 1317..1248 320 97.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27916930..27918249 1..1320 6600 100 Plus
X 23542271 X 3797501..3797570 1248..1317 320 97.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 27657761..27659080 1..1320 6600 100 Plus
X 23527363 X 3805599..3805668 1248..1317 320 97.1 Plus
Blast to na_te.dros performed on 2019-03-16 23:49:16 has no hits.

GH07821.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:50:01 Download gff for GH07821.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 23739891..23741209 1..1319 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:24:50 Download gff for GH07821.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS22-RA 1..1182 73..1254 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:33:25 Download gff for GH07821.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS22-RA 1..1182 73..1254 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:51:18 Download gff for GH07821.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS22-RA 1..1182 73..1254 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:17:17 Download gff for GH07821.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS22-RA 1..1182 73..1254 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:03 Download gff for GH07821.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS22-RA 1..1182 73..1254 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:37:06 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:39:15 Download gff for GH07821.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS22-RA 22..1340 1..1319 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:33:25 Download gff for GH07821.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS22-RA 22..1340 1..1319 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:18 Download gff for GH07821.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS22-RA 22..1340 1..1319 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:17:18 Download gff for GH07821.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS22-RA 22..1340 1..1319 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:03 Download gff for GH07821.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS22-RA 23..1341 1..1319 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:50:01 Download gff for GH07821.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27916930..27918248 1..1319 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:50:01 Download gff for GH07821.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27916930..27918248 1..1319 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:50:01 Download gff for GH07821.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27916930..27918248 1..1319 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:18 Download gff for GH07821.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23742652..23743970 1..1319 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:54:21 Download gff for GH07821.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27657761..27659079 1..1319 100   Plus

GH07821.hyp Sequence

Translation from 72 to 1253

> GH07821.hyp
MHLLRSLRQLNGLQGVRQAIRQVSSAPTKPAALQYERDPQPLFTDAETQR
LLQSMTQLNLDKVYRKRTVPDNSSETKFMSNEQLDNEFQNLVVRAQQILQ
MPPIVQIKKDVERVIAKDTALKDFANSKFVFTDITFGRRQSERKVIVRDM
DGTLAYATLDTTKRMNQLYFPLEGRQSYTPRMFALEELLAKCLAEHKYEF
ILDRLLVQYEPHEPEFHNISARVFEHLNESKEFDLLRSTRHFGPMAFFYA
WHRCIDDLLYDMIRRDYLHNAVELIALSYKLHNIPVEYQATLTELGKLHA
TPAESALAELRSVFRRHDNKQNIEQEIHTAIGKTEHDFAADEISLKFIEQ
YIASEHALKKVQLELAVQTLKEVNREKLMLFQGLKKAHGVQAS*

GH07821.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS22-PA 393 CG12261-PA 1..393 1..393 2005 100 Plus

GH07821.pep Sequence

Translation from 72 to 1253

> GH07821.pep
MHLLRSLRQLNGLQGVRQAIRQVSSAPTKPAALQYERDPQPLFTDAETQR
LLQSMTQLNLDKVYRKRTVPDNSSETKFMSNEQLDNEFQNLVVRAQQILQ
MPPIVQIKKDVERVIAKDTALKDFANSKFVFTDITFGRRQSERKVIVRDM
DGTLAYATLDTTKRMNQLYFPLEGRQSYTPRMFALEELLAKCLAEHKYEF
ILDRLLVQYEPHEPEFHNISARVFEHLNESKEFDLLRSTRHFGPMAFFYA
WHRCIDDLLYDMIRRDYLHNAVELIALSYKLHNIPVEYQATLTELGKLHA
TPAESALAELRSVFRRHDNKQNIEQEIHTAIGKTEHDFAADEISLKFIEQ
YIASEHALKKVQLELAVQTLKEVNREKLMLFQGLKKAHGVQAS*

GH07821.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16307-PA 393 GF16307-PA 1..393 1..393 1793 82.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11579-PA 393 GG11579-PA 1..393 1..393 1979 94.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16586-PA 390 GH16586-PA 1..388 1..393 1463 69.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS22-PA 393 CG12261-PA 1..393 1..393 2005 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22031-PA 391 GI22031-PA 1..391 1..393 1533 73.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13721-PA 393 GL13721-PA 1..393 1..393 1665 78.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11515-PA 393 GA11515-PA 1..393 1..393 1658 77.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16361-PA 393 GM16361-PA 1..393 1..393 2042 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21355-PA 393 GD21355-PA 1..393 1..393 2016 96.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10478-PA 396 GJ10478-PA 1..396 1..393 1540 72.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11773-PA 391 GK11773-PA 1..391 1..393 1489 70.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23768-PA 393 GE23768-PA 1..393 1..393 1991 94.4 Plus