Clone GH07929 Report

Search the DGRC for GH07929

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:79
Well:29
Vector:pOT2
Associated Gene/TranscriptO-fut2-RA
Protein status:GH07929.pep: gold
Preliminary Size:2200
Sequenced Size:1667

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14789 2001-01-01 Release 2 assignment
CG14789 2001-07-04 Blastp of sequenced clone
CG14789 2003-01-01 Sim4 clustering to Release 3
O-fut2 2008-04-29 Release 5.5 accounting
O-fut2 2008-08-15 Release 5.9 accounting
O-fut2 2008-12-18 5.12 accounting

Clone Sequence Records

GH07929.complete Sequence

1667 bp (1667 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047568

> GH07929.complete
CCACAGCCACTCCATTCCAAACCAAAAATGCGAGGGAGCTGGCCCAGGCT
TGGGTTCCCGGCGCTGCTCCTGCTCCTCCATCTGCTGACCGGCTCGGATG
CCGCCGTCCGGAATGGGACTGCAAAGCGGGAAATTGGCGATTCCCGGGGA
AGCAGCGGCACCTGCGTCAAAGGGTTCCTGCAGGAGATCCTGCCACTGCC
AGCGACTTGTCCGCCTGAGGTGCTCGGGATGAGGGGCGCCGTGTATATCC
TTTACGACGTAAACATCTCCGAGGGCTTCAACCTGCGCCGAGACGTCTAT
ATTCGCATGGCGGTGTTCGTGCGCCGGCTGCAGAGGAGAAGGCGCTTTCG
CCATGTGCGCCTTGTGCTGCCGCCGTGGCCCCGCCTCTACCACTGGCACT
CGCAGGGCCTGCAGCAATCTGGACTGCCCTGGAGCCACTTCTTCGACTTG
GCCAGTCTGCGTCGCTACGCGCCCGTTCTGGACTACGAGGAATTCCTGGC
CGAACAGCGCTTATTCGGCAATCCTGGCGCACCGCTGGTCCATGTAGGGC
ACGCTTTCCGGTTGCAGCACTACGAGGTCATGCTAGAACAGGGCATATTT
CGGGACAAGTTCGAGCGCGTCACGGACAAGCCGTGCAGCGAGGGATCCCT
GTCGGGAGGACCATTGCTGCAGCAGGCGGAGCTGCGCGTGGGGCGTTTCC
ACTGCGTTCGGTTCCAGGGCAGCGCCGGACTGCTGGAGAAGTTGCTTCGC
GAGGCGATCGACGAGGACACGGCGGGACCGGAGGACGTCGACGACATGCG
CACGTACGCTTTGCTCAGCGCCGAAACGGTGCTTCACGACCACTGGGGCG
ACGAGCACTTTTGGCAGGCCCGGCGTTCCATGCGTTTCGCCCGTCGGCTC
GAACAGGTGGCCGCCGACTTCCGACGGCAGGCCCTGGACACCACAGATGC
TTCGGCCGGTGTCCAACGGCCCGCCATGTGGGAGCTGGAGCGGCCGAAGC
GCAACGCCAAGGGCGGCGATTACCTCTGCGCCCACCTAAGGCGGGGCGAC
TTTGTTCGCTCGCGGGATGCGACCACTCCCACCCTGAAGGCGGCTGCCCA
GCAGGTCAAGCAGCTGCTGCGCGGGTTTAACATGACCACAGTGTTCCTGG
CCACTGACGCCACGCCATACGAGCTGATGGAACTAAAGGAGCTCTTCTAC
CGCTTCCGCCTCGTGCACTTCGCGCCGGAGTCGAATGTCCAACGAAGGGA
GCTGAAGGATGGGGGCGTGGCGGTGGTGGACCAGCTGGTCTGCGCCTACG
CCCGCTACTTTGTGGGCACCTACGAGAGCACCTTCACGTACCGCATCTAC
GAGGAGCGCGAGATCCTCGGCTTTACCCAGGCCAGCACCTTTAACACGTT
CTGCAAGGCCTTAGGCGGCAGCTGCTCGCGCAACGCCGTGTGGCCCATTG
TGTGGGCGGATGGCGATAGCGACAGCGAGGAAGATTCCGACCCGTACTGA
TCCATCTGTAGCTCCCACCTGACATCTCAAGACCTAGTTTTAAGTCCAAA
GCCAACGTAAGAGAGCAAACGGGATTCCGAACCACCTGCGATTGTGTACC
AAAAATAAATCTAAAGCCAACAGAAAAGTGCTAGCAGAAAAGTCAAAAAA
AAAAAAAAAAAAAAAAA

GH07929.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
O-fut2-RA 2070 O-fut2-RA 427..2070 1..1644 8220 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1358286..1359929 1644..1 8145 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:37:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1464361..1466006 1646..1 8230 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1472459..1474104 1646..1 8230 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:07:41 has no hits.

GH07929.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:08:34 Download gff for GH07929.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1358286..1359929 1..1644 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:25:34 Download gff for GH07929.complete
Subject Subject Range Query Range Percent Splice Strand
O-fut2-RA 1..1473 28..1500 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:28:56 Download gff for GH07929.complete
Subject Subject Range Query Range Percent Splice Strand
O-fut2-RA 1..1473 28..1500 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:56:23 Download gff for GH07929.complete
Subject Subject Range Query Range Percent Splice Strand
O-fut2-RA 1..1473 28..1500 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:02:21 Download gff for GH07929.complete
Subject Subject Range Query Range Percent Splice Strand
O-fut2-RA 1..1473 28..1500 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:56:29 Download gff for GH07929.complete
Subject Subject Range Query Range Percent Splice Strand
O-fut2-RA 1..1473 28..1500 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:29:10 Download gff for GH07929.complete
Subject Subject Range Query Range Percent Splice Strand
O-fut2-RA 427..2070 1..1644 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:28:56 Download gff for GH07929.complete
Subject Subject Range Query Range Percent Splice Strand
O-fut2-RA 427..2070 1..1644 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:23 Download gff for GH07929.complete
Subject Subject Range Query Range Percent Splice Strand
O-fut2-RA 1..1634 11..1644 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:02:22 Download gff for GH07929.complete
Subject Subject Range Query Range Percent Splice Strand
O-fut2-RA 427..2070 1..1644 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:56:29 Download gff for GH07929.complete
Subject Subject Range Query Range Percent Splice Strand
O-fut2-RA 1..1634 11..1644 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:08:34 Download gff for GH07929.complete
Subject Subject Range Query Range Percent Splice Strand
X 1464363..1466006 1..1644 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:08:34 Download gff for GH07929.complete
Subject Subject Range Query Range Percent Splice Strand
X 1464363..1466006 1..1644 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:08:34 Download gff for GH07929.complete
Subject Subject Range Query Range Percent Splice Strand
X 1464363..1466006 1..1644 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:23 Download gff for GH07929.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1358396..1360039 1..1644 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:40:18 Download gff for GH07929.complete
Subject Subject Range Query Range Percent Splice Strand
X 1472461..1474104 1..1644 100   Minus

GH07929.hyp Sequence

Translation from 1 to 1499

> GH07929.hyp
PQPLHSKPKMRGSWPRLGFPALLLLLHLLTGSDAAVRNGTAKREIGDSRG
SSGTCVKGFLQEILPLPATCPPEVLGMRGAVYILYDVNISEGFNLRRDVY
IRMAVFVRRLQRRRRFRHVRLVLPPWPRLYHWHSQGLQQSGLPWSHFFDL
ASLRRYAPVLDYEEFLAEQRLFGNPGAPLVHVGHAFRLQHYEVMLEQGIF
RDKFERVTDKPCSEGSLSGGPLLQQAELRVGRFHCVRFQGSAGLLEKLLR
EAIDEDTAGPEDVDDMRTYALLSAETVLHDHWGDEHFWQARRSMRFARRL
EQVAADFRRQALDTTDASAGVQRPAMWELERPKRNAKGGDYLCAHLRRGD
FVRSRDATTPTLKAAAQQVKQLLRGFNMTTVFLATDATPYELMELKELFY
RFRLVHFAPESNVQRRELKDGGVAVVDQLVCAYARYFVGTYESTFTYRIY
EEREILGFTQASTFNTFCKALGGSCSRNAVWPIVWADGDSDSEEDSDPY*

GH07929.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
O-fut2-PA 490 CG14789-PA 1..490 10..499 2594 100 Plus

GH07929.pep Sequence

Translation from 27 to 1499

> GH07929.pep
MRGSWPRLGFPALLLLLHLLTGSDAAVRNGTAKREIGDSRGSSGTCVKGF
LQEILPLPATCPPEVLGMRGAVYILYDVNISEGFNLRRDVYIRMAVFVRR
LQRRRRFRHVRLVLPPWPRLYHWHSQGLQQSGLPWSHFFDLASLRRYAPV
LDYEEFLAEQRLFGNPGAPLVHVGHAFRLQHYEVMLEQGIFRDKFERVTD
KPCSEGSLSGGPLLQQAELRVGRFHCVRFQGSAGLLEKLLREAIDEDTAG
PEDVDDMRTYALLSAETVLHDHWGDEHFWQARRSMRFARRLEQVAADFRR
QALDTTDASAGVQRPAMWELERPKRNAKGGDYLCAHLRRGDFVRSRDATT
PTLKAAAQQVKQLLRGFNMTTVFLATDATPYELMELKELFYRFRLVHFAP
ESNVQRRELKDGGVAVVDQLVCAYARYFVGTYESTFTYRIYEEREILGFT
QASTFNTFCKALGGSCSRNAVWPIVWADGDSDSEEDSDPY*

GH07929.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21276-PA 491 GF21276-PA 1..476 1..476 2002 79.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12697-PA 490 GG12697-PA 1..479 1..479 2210 91.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11874-PA 499 GH11874-PA 28..495 21..480 1783 73 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
O-fut2-PA 490 CG14789-PA 1..490 1..490 2594 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15662-PA 493 GI15662-PA 43..490 42..482 1792 76.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14377-PA 492 GL14377-PA 29..492 26..490 1779 71.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13247-PA 492 GA13247-PA 29..492 26..490 1772 71 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18972-PA 490 GM18972-PA 1..490 1..490 2349 95.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24636-PA 490 GD24636-PA 1..490 1..490 2338 95.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19195-PA 499 GJ19195-PA 1..487 1..476 1762 72.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25021-PA 511 GK25021-PA 12..492 13..478 1841 71.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\O-fut2-PA 490 GE16526-PA 1..490 1..490 2223 91.4 Plus