Clone GH07940 Report

Search the DGRC for GH07940

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:79
Well:40
Vector:pOT2
Associated Gene/TranscriptCG11018-RA
Protein status:GH07940.pep: gold
Preliminary Size:1305
Sequenced Size:1216

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11018 2001-01-01 Release 2 assignment
CG11018 2002-03-19 Blastp of sequenced clone
CG11018 2003-01-01 Sim4 clustering to Release 3
CG11018 2008-04-29 Release 5.5 accounting
CG11018 2008-08-15 Release 5.9 accounting
CG11018 2008-12-18 5.12 accounting

Clone Sequence Records

GH07940.complete Sequence

1216 bp (1216 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094686

> GH07940.complete
TTGAATCACACTTTAAAGACAAGGGATATACCCCTAAAATATCACATAGA
ACACTATGCATTGGTATGCAATCCTCCAAGGATTCCTCCTGGGAATATCA
TCGATAATCATTTTATGGGTACAAGGAGTCGTTGGCTTGCCATTGGCTAC
AACCGATCTGGAGTCACTTCCAATCGTCTTGGCAGAGGATGTTCCGGTGG
AGAGAGCTCCAAGGCAAGTAAAACCAGATCCGTCGACGTTCGATATTTTC
AAGGTGGATCAAAGCTCCAATAACCAAATGCAGCAGAAATCCGACGGCTT
CAGAGTGTTCGCAAAGAAACTACAGGATGATTATCACCGTAGAGCTGGCT
ACAATGAAACTAATCCGCCACCAATTACTGTGACCCGAGGAAGCACTACT
GCTCCTAAGAAAATCCATAAAAGTGGCATTCGACTATTTGCTTCTCCACA
AGATCCACCTCCGCCTGAAGCTGCGGCGCCAGCTGATGGAGCTCCAGCGG
CGGCAGGAGCGGCTGAAGGAGGTGCCGCCGGAGGAAAAGGAACTGAACCA
CCCAAAGAGCTGACCGTCAGTATTCAACAATTCGTTACAAACCAATATGG
GGAGAAGGAATACAATGCTTGGGGCGTCACTTTTGGTAGACATTTCTTCG
ACACCCGTTTCGCCGTAGCTAGGCATGAAATACCTCGAATAACTGTGGAT
CCGAAACCGGTCCGTAATTACTATCCAAAAATGGACAATCTGACCACCGT
CTGCTTGAACAGATCGACCATCTACAATGAGATTAAAGTCGAAAAGTGGC
TGATGCGCCACGTCTACAGCATAAAGAAGAAAGTGCGCCCCTTCTTTTTC
TCCCTTCGCCAGCAGCTCTACGAGAAAGGGGATTCGGAGCAGTGCCACAA
TGAGTCCTACACTGACTGGTTGGAGTACCAGGAGTGCGCCATTAGACGCA
ACCAGCGCATGGAGTACTTTATCCCCAAGTATCCGCTACACCAACTTGCC
ATTAACTAAAGGCAACCACATCTTGGACTCACTCAACCTGTTTAAATTTC
AGTTAGACATTGATCATGATCAGTCTTCGTACGAGAAAATTGATGGGACA
AGGAATGATTATCATATTTGTGATTCCTCTTCATTTAAATGTAAATTCAA
AAATTTTCTTGATTTATGCTTGCAGAAATAAATATATTTTATTTTCTTAA
AAAAAAAAAAAAAAAA

GH07940.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11018-RA 1373 CG11018-RA 78..1277 1..1200 6000 100 Plus
CG11018.b 1234 CG11018.b 162..1234 126..1198 5365 100 Plus
CG11018.a 1197 CG11018.a 53..761 1..709 3545 100 Plus
CG11018.a 1197 CG11018.a 757..1197 758..1198 2190 99.7 Plus
CG11018.b 1234 CG11018.b 53..161 1..109 545 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 15549896..15550984 110..1198 5310 99.2 Plus
chr2R 21145070 chr2R 15549734..15549842 1..109 470 95.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:37:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19662650..19663740 110..1200 5455 100 Plus
2R 25286936 2R 19662488..19662596 1..109 545 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 19663849..19664939 110..1200 5455 100 Plus
2R 25260384 2R 19663687..19663795 1..109 545 100 Plus
Blast to na_te.dros performed 2019-03-16 07:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1282..1367 1196..1109 120 61.4 Minus

GH07940.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:58:31 Download gff for GH07940.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 15549734..15549842 1..109 95 -> Plus
chr2R 15549896..15550957 110..1171 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:25:42 Download gff for GH07940.complete
Subject Subject Range Query Range Percent Splice Strand
CG11018-RA 1..954 56..1009 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:31:17 Download gff for GH07940.complete
Subject Subject Range Query Range Percent Splice Strand
CG11018-RA 1..954 56..1009 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:12:12 Download gff for GH07940.complete
Subject Subject Range Query Range Percent Splice Strand
CG11018-RA 1..954 56..1009 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:04:36 Download gff for GH07940.complete
Subject Subject Range Query Range Percent Splice Strand
CG11018-RA 1..954 56..1009 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:41 Download gff for GH07940.complete
Subject Subject Range Query Range Percent Splice Strand
CG11018-RA 1..954 56..1009 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:57:21 Download gff for GH07940.complete
Subject Subject Range Query Range Percent Splice Strand
CG11018-RA 53..1250 1..1198 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:31:16 Download gff for GH07940.complete
Subject Subject Range Query Range Percent Splice Strand
CG11018-RA 53..1250 1..1198 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:12 Download gff for GH07940.complete
Subject Subject Range Query Range Percent Splice Strand
CG11018-RA 53..1250 1..1198 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:04:36 Download gff for GH07940.complete
Subject Subject Range Query Range Percent Splice Strand
CG11018-RA 53..1250 1..1198 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:41 Download gff for GH07940.complete
Subject Subject Range Query Range Percent Splice Strand
CG11018-RA 53..1250 1..1198 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:58:31 Download gff for GH07940.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19662488..19662596 1..109 100 -> Plus
2R 19662650..19663738 110..1198 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:58:31 Download gff for GH07940.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19662488..19662596 1..109 100 -> Plus
2R 19662650..19663738 110..1198 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:58:31 Download gff for GH07940.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19662488..19662596 1..109 100 -> Plus
2R 19662650..19663738 110..1198 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:12 Download gff for GH07940.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15549993..15550101 1..109 100 -> Plus
arm_2R 15550155..15551243 110..1198 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:38:20 Download gff for GH07940.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19663849..19664937 110..1198 100   Plus
2R 19663687..19663795 1..109 100 -> Plus

GH07940.pep Sequence

Translation from 55 to 1008

> GH07940.pep
MHWYAILQGFLLGISSIIILWVQGVVGLPLATTDLESLPIVLAEDVPVER
APRQVKPDPSTFDIFKVDQSSNNQMQQKSDGFRVFAKKLQDDYHRRAGYN
ETNPPPITVTRGSTTAPKKIHKSGIRLFASPQDPPPPEAAAPADGAPAAA
GAAEGGAAGGKGTEPPKELTVSIQQFVTNQYGEKEYNAWGVTFGRHFFDT
RFAVARHEIPRITVDPKPVRNYYPKMDNLTTVCLNRSTIYNEIKVEKWLM
RHVYSIKKKVRPFFFSLRQQLYEKGDSEQCHNESYTDWLEYQECAIRRNQ
RMEYFIPKYPLHQLAIN*

GH07940.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19779-PA 274 GF19779-PA 121..274 164..317 510 55.8 Plus
Dana\GF12759-PA 612 GF12759-PA 447..496 261..310 154 54 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21991-PA 313 GG21991-PA 1..313 1..317 1109 70.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14616-PA 180 GH14616-PA 28..170 170..313 311 41 Plus
Dgri\GH10550-PA 136 GH10550-PA 4..122 199..315 288 47.1 Plus
Dgri\GH23784-PA 136 GH23784-PA 4..122 199..315 288 47.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11018-PA 317 CG11018-PA 1..317 1..317 1693 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24599-PA 199 GI24599-PA 49..199 168..317 390 49.7 Plus
Dmoj\GI20911-PA 354 GI20911-PA 212..351 175..315 323 45.1 Plus
Dmoj\GI13503-PA 145 GI13503-PA 1..140 173..314 310 42.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10355-PA 297 GL10355-PA 146..297 167..317 381 48 Plus
Dper\GL23531-PA 301 GL23531-PA 45..296 75..313 364 34.8 Plus
Dper\GL23530-PA 482 GL23530-PA 371..471 216..315 244 46.5 Plus
Dper\GL10191-PA 692 GL10191-PA 536..690 166..313 215 33.1 Plus
Dper\GL17269-PA 134 GL17269-PA 33..107 241..315 181 48 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10710-PB 324 GA10710-PB 173..324 167..317 382 48 Plus
Dpse\GA27293-PA 310 GA27293-PA 53..305 75..313 349 33.6 Plus
Dpse\GA27292-PA 294 GA27292-PA 31..289 67..313 319 34.9 Plus
Dpse\GA24444-PA 345 GA24444-PA 163..328 157..313 291 40.1 Plus
Dpse\GA30158-PA 468 GA30158-PA 331..457 190..315 278 41.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21978-PA 317 GM21978-PA 1..317 1..317 1422 91.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11474-PA 316 GD11474-PA 1..316 1..317 1351 89.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16126-PA 165 GJ16126-PA 3..152 167..315 376 49.3 Plus
Dvir\GJ11864-PA 152 GJ11864-PA 7..149 172..314 340 42.7 Plus
Dvir\GJ19876-PA 360 GJ19876-PA 220..358 175..314 326 44 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15884-PA 233 GK15884-PA 76..226 161..314 430 50.3 Plus
Dwil\GK10974-PA 212 GK10974-PA 9..212 122..316 412 42.6 Plus
Dwil\GK11723-PA 145 GK11723-PA 2..135 182..314 338 48.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12071-PA 309 GE12071-PA 1..309 1..317 1194 74.1 Plus

GH07940.hyp Sequence

Translation from 55 to 1008

> GH07940.hyp
MHWYAILQGFLLGISSIIILWVQGVVGLPLATTDLESLPIVLAEDVPVER
APRQVKPDPSTFDIFKVDQSSNNQMQQKSDGFRVFAKKLQDDYHRRAGYN
ETNPPPITVTRGSTTAPKKIHKSGIRLFASPQDPPPPEAAAPADGAPAAA
GAAEGGAAGGKGTEPPKELTVSIQQFVTNQYGEKEYNAWGVTFGRHFFDT
RFAVARHEIPRITVDPKPVRNYYPKMDNLTTVCLNRSTIYNEIKVEKWLM
RHVYSIKKKVRPFFFSLRQQLYEKGDSEQCHNESYTDWLEYQECAIRRNQ
RMEYFIPKYPLHQLAIN*

GH07940.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG11018-PA 317 CG11018-PA 1..317 1..317 1693 100 Plus