Clone GH07964 Report

Search the DGRC for GH07964

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:79
Well:64
Vector:pOT2
Associated Gene/TranscriptCG33293-RA
Protein status:GH07964.pep: gold
Preliminary Size:3234
Sequenced Size:3493

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12163 2001-01-01 Release 2 assignment
CG33293 2001-07-04 Blastp of sequenced clone
CG33293 2008-04-29 Release 5.5 accounting

Clone Sequence Records

GH07964.complete Sequence

3493 bp (3493 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060254

> GH07964.complete
CAGCATTATCATGAATATTCTCATTATCATCCCAGACACACACACACACA
CTCACACACACAGCCAGCCCCATCGTTCAGAGTCTCTGTCTTTCTCATAT
AAATACTCAGCCCACTCATTATACATACTCACCCTAATGCGAACAATAAA
AAAGGAAAATGTTATTTAATTGAATTTATTTAAGCCTGCCTTTTCACCTG
ATGACGATGGCGATGTGATGATGATGGTTGGGTTCGTCGGCATGGCAGAA
CACTTATTTCACCTTAATAATCAAATGAGTTTCCGCTCTCAAATTACGGC
CGCAATCTGTTTAACCCGCCGTATCTTAGCCGTATTCGTGGCACCTGTGC
AGGGGCCATCTGCACCTGTCTATATGTCTTGGCTGTGAACTGGGGTTGGG
TTGGCCCCAAGTGCCGGTATGTATGAGAGGTTAAGTGGGTGGAGGCTCAG
GATTCCCCTCCCGCTCGCCGTGTAGTGCCCGCGGTGTCGACAGAAGCTGA
AATACACAGAGTGGTGCGAGGCAAGTGTTCTCATTATCCTTGTGCTCTAC
TTTTTACAGCAGTTGGCTCTGTGGTGCCACGCACAGTGGGTCTGGGCGAT
TTGTCTCCGGCGGTCGGTGGCCACTTTCCACCCGACTTCGCGTCGAGAGC
ATAAGGGGTTAAGTAATCAATGACACAATCTGCAATTTTAATGGTGGCGA
CGCTGCTCTAGAGCGTGGGTTTTCCAAGTGTGAGCCGTTTGATCGCAATC
CATTGATTGGAAATTTTGTGAGCAGGAGTATCTACATTGTACCATATTGA
ATTTAAACTGAAGGGGCATTTGGTCTTTACCGGATTTAGGAATTAAATAG
CCACTGCGGGGAGTGTAACTTTTGACTTCCAATTAATAAATCCATTATTT
AATTACTTTGTTTAAATCCAGCTGCCGAAGAGGGAAATAAATTACATTTG
AACGCGATAATTCGCTTCAATCTTCGTTGGACATGTTCAACAATCGGAAA
TTCCTTTGCCAACATTATTTCCAACCCATATAAGTGCCTAATGAGCTCCT
GGAAAAGTCATCGCGGAATAAATTAATTAAGTGCTTTGAAAACGAGAACC
ATTCAGTTCAGTTGCATTGCTGATTTACGGCAACTGTCAGAAAGTATAGC
GCCGCGTTCAGCACTTCACTGTCTATACATCCGAATGGATTTCACGGACC
ATTGCACACTGCTCCCACCCACAGGAGCCACATACTCCATGCCCAGGGTT
CTCCTCTGTTGCCCCAGGGTCGTGGAAACATCATTTACGATATAATTCTT
ATTGAAATACACATTTGAATTAACAGTTCCCCCCGTCTCGATGGAATGAG
ATGGGATAGGATGCGATGGGATGGGCTAAAATGGGTTGGATAGTAGGCCA
GGCCAGTTGAACTGAGATGAGGCTGGAAAAGGGAGTGCTTAGCAGGCAGC
TTAATGAATTCATGTTCGGACACAGTATGCACACATCTATAGGGATGACC
ACGGACTCCCAGTTCCAGCGACGGCCTCTTTTTGTGTTCCTGTATTTTTA
ATTATACACACGTCGTAGCCATTACATTCCATTCGGTATTGTTGTCGCTA
CATAGGTGACCTCCTGCACTTCAAAAGTATTTGCACTGCATTTCGGCTTG
AAAGTTTCTAAAGCCGCACATTGGAATTTTTGAATAAATAAGTATATATG
GATAACTCCCTCCAAGGGCAAACAGTAGTATAGAAGATATAATTCGTTCT
TTTCCTCCTCAACTTACATGTTTTCCTAGCCCTTGTAGGCCATAAAATGT
TTCGAGTGTGGTTCCACCTGCAATCCTTATTCGCATTCGCCATGCCAGTT
GCCCGGGTGTGACAGCAGGAGCAGACATTTGGCTCCTGGCTGTGGGTGTG
GATTTGGCAGAGACTGGGGCTCCGGATCCTCAGAAACCAACTCCCATCAA
CGGCATCAACATATTACTCGTACCATCATCGATGCCAGGCGGCAAACGAA
TATCCAGCCGAAATGTTTGGTTTAATTGGTTTTGTGTTCAGCATTGAATG
GTTTATGGGCCGCTTGTGTCTGTCGATGTTATTGTTGGCGTATCCCACAT
TCTGGGGGATGGGAGATGCCTTTGGACCGCCATGTTCCTTGCCGCAAACT
CTTCCAGCCACGTGTACTAGAACGATGTGTCGTTTTGTCAGATTCGGTAA
TGTAAATTCAGACATATCCTTGTTTTACCTACATTCGCATATAACTTATG
TTCCCTCCACTCCTACCCACCACTGCTCGTGGTGTCGGAGGTCTGATGTG
GTGACAGCTGTGTGTCTGTTTGTAATGGATAAGTGTTTCCCTGTTCCGTA
ATTAGCACAAGATTAGCGAACTCACAGACAGCAAACAAAGGGCTGATTTG
GCTTGTCTTTTGGCGTGATGCGTGGAATGTATGGGTGGGATATATTGTAT
AGGATTAATGGAATCTTCACTTGTCTGTTTCCCATTCAAGCCTAAAGAAA
TAATGAAGGTATATAAAAGGAGGTAAGGACTACCTGCAAAACATTTCGAA
AATAAAGGTCAAAGTAGGGCCTGGAGTCGAGCTAAGTTGTCAATGTCGTT
TGCGTCCCAGTCCAAATTCAGTTTACATTACTCGGTTACCTCAGTCCGAA
GCCACTAGACATATATTTTTTAATATTTTGTAAGGTGCGTAAATACTTAA
CATTTTTTTTTAAAGTTTATTGATCGATAAACACGGTTTGTGCAGAGATT
CCTTCCATTATGGAACGATTCGCACTGACAACCTGCATTCGCCGTGTCTG
GATCATGTCCGGATGGCTGCGCCAGGAGGCGGCAATAGCAGCCGGCATGT
TGGTGGTGCAGCGACACCAGGTTGAGCTGAGGAATGAGGAGGAGGAGGGG
CTCAAAGTCGGACAGCAGACTGCATCCAGTGGCGGTGACGTGGGCGTGGA
CTCGCAAGGAAGACTCCGCCGCGTGCGGCTGCTAGACGACTACATTGTGC
CCTTTGAATGCGGTCTTTGATTCTCGATCCCCATCTCCTGTTCACCGATA
TGGTTCTGGGCCACAGCGCAGTTAGTTCATTTCGCATTCGAAGCAGTTGG
CATTCAAGTAGTTCGATTCGTGAAACCGCTTCTCCAAATTTTGGTCAGAC
GGAATCTTCATTGTATGCGCTCTACGTGGACGGAGAACGAAAACAAATAT
TTTAATCGAAGATATAGCCCCAAAAAGCATGTTATTGTAAAATTTTATAT
TTTCACGAGTAGTTCGCGTTAATCTCGACGTTTTAGCGACATTAAAATTA
AACAATCAATGGTGAACACTTTTTATGGTTTACTGAGCTTATAAATCGAG
ATTGGAATATTTCCGAGATTCCATAAAAAGTTGGAACTAGCCTGGAATTA
AATGGCATCCGTTTGAAAGGCTTTTAAATACCCATTACTCATGAAGTGGA
AGTGGAATCTTGATGGAAATGTGCAAAAAAAAAAAAAAAAAAA

GH07964.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG33293-RA 687 CG33293-RA 113..687 2744..3318 2875 100 Plus
CG33293-RA 687 CG33293-RA 1..114 2571..2684 570 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1065514..1068987 3474..1 17370 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:37:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5239835..5243323 3489..1 17415 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4980666..4984154 3489..1 17415 99.9 Minus
Blast to na_te.dros performed 2019-03-16 10:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 918..970 2455..2403 121 69.8 Minus
Bari1 1728 Bari1 DMBARI1 1728bp AKA(S55767) Derived from X67681 (g7640) (Rel. 36, Last updated, Version 6). 1416..1496 1699..1615 118 63.5 Minus

GH07964.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:11:54 Download gff for GH07964.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1065514..1068987 1..3474 98   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:28:59 Download gff for GH07964.complete
Subject Subject Range Query Range Percent Splice Strand
CG33293-RA 1..261 2760..3020 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:57:06 Download gff for GH07964.complete
Subject Subject Range Query Range Percent Splice Strand
CG33293-RA 1..261 2760..3020 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:02:24 Download gff for GH07964.complete
Subject Subject Range Query Range Percent Splice Strand
CG33293-RA 1..261 2760..3020 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:58:26 Download gff for GH07964.complete
Subject Subject Range Query Range Percent Splice Strand
CG33293-RA 1..261 2760..3020 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:29:13 Download gff for GH07964.complete
Subject Subject Range Query Range Percent Splice Strand
CG33293-RA 1..88 2589..2676 100 == Plus
CG33293-RA 89..669 2737..3318 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:28:59 Download gff for GH07964.complete
Subject Subject Range Query Range Percent Splice Strand
CG33293-RA 1..88 2589..2676 100 == Plus
CG33293-RA 89..661 2737..3310 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:06 Download gff for GH07964.complete
Subject Subject Range Query Range Percent Splice Strand
CG33293-RA 1..88 2589..2676 100 == Plus
CG33293-RA 89..661 2737..3310 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:02:24 Download gff for GH07964.complete
Subject Subject Range Query Range Percent Splice Strand
CG33293-RA 1..88 2589..2676 100 == Plus
CG33293-RA 89..669 2737..3318 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:58:26 Download gff for GH07964.complete
Subject Subject Range Query Range Percent Splice Strand
CG33293-RA 1..88 2589..2676 100 == Plus
CG33293-RA 89..661 2737..3310 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:11:54 Download gff for GH07964.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5239850..5243323 1..3474 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:11:54 Download gff for GH07964.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5239850..5243323 1..3474 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:11:54 Download gff for GH07964.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5239850..5243323 1..3474 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:06 Download gff for GH07964.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1065572..1069045 1..3474 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:40:21 Download gff for GH07964.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4980681..4984154 1..3474 100   Minus

GH07964.hyp Sequence

Translation from 2012 to 2350

> GH07964.hyp
MFGLIGFVFSIEWFMGRLCLSMLLLAYPTFWGMGDAFGPPCSLPQTLPAT
CTRTMCRFVRFGNVNSDISLFYLHSHITYVPSTPTHHCSWCRRSDVVTAV
CLFVMDKCFPVP*
Sequence GH07964.hyp has no blast hits.

GH07964.pep Sequence

Translation from 2759 to 3019

> GH07964.pep
MERFALTTCIRRVWIMSGWLRQEAAIAAGMLVVQRHQVELRNEEEEGLKV
GQQTASSGGDVGVDSQGRLRRVRLLDDYIVPFECGL*

GH07964.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG33293-PA 86 CG33293-PA 1..86 1..86 441 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:20:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30106-PA 82 GA30106-PA 1..82 1..86 236 53.5 Plus
Dpse\GA25916-PA 87 GA25916-PA 1..87 1..86 174 46.6 Plus