Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH07964.complete Sequence
3493 bp (3493 high quality bases) assembled on 2001-07-04
GenBank Submission: AY060254
> GH07964.complete
CAGCATTATCATGAATATTCTCATTATCATCCCAGACACACACACACACA
CTCACACACACAGCCAGCCCCATCGTTCAGAGTCTCTGTCTTTCTCATAT
AAATACTCAGCCCACTCATTATACATACTCACCCTAATGCGAACAATAAA
AAAGGAAAATGTTATTTAATTGAATTTATTTAAGCCTGCCTTTTCACCTG
ATGACGATGGCGATGTGATGATGATGGTTGGGTTCGTCGGCATGGCAGAA
CACTTATTTCACCTTAATAATCAAATGAGTTTCCGCTCTCAAATTACGGC
CGCAATCTGTTTAACCCGCCGTATCTTAGCCGTATTCGTGGCACCTGTGC
AGGGGCCATCTGCACCTGTCTATATGTCTTGGCTGTGAACTGGGGTTGGG
TTGGCCCCAAGTGCCGGTATGTATGAGAGGTTAAGTGGGTGGAGGCTCAG
GATTCCCCTCCCGCTCGCCGTGTAGTGCCCGCGGTGTCGACAGAAGCTGA
AATACACAGAGTGGTGCGAGGCAAGTGTTCTCATTATCCTTGTGCTCTAC
TTTTTACAGCAGTTGGCTCTGTGGTGCCACGCACAGTGGGTCTGGGCGAT
TTGTCTCCGGCGGTCGGTGGCCACTTTCCACCCGACTTCGCGTCGAGAGC
ATAAGGGGTTAAGTAATCAATGACACAATCTGCAATTTTAATGGTGGCGA
CGCTGCTCTAGAGCGTGGGTTTTCCAAGTGTGAGCCGTTTGATCGCAATC
CATTGATTGGAAATTTTGTGAGCAGGAGTATCTACATTGTACCATATTGA
ATTTAAACTGAAGGGGCATTTGGTCTTTACCGGATTTAGGAATTAAATAG
CCACTGCGGGGAGTGTAACTTTTGACTTCCAATTAATAAATCCATTATTT
AATTACTTTGTTTAAATCCAGCTGCCGAAGAGGGAAATAAATTACATTTG
AACGCGATAATTCGCTTCAATCTTCGTTGGACATGTTCAACAATCGGAAA
TTCCTTTGCCAACATTATTTCCAACCCATATAAGTGCCTAATGAGCTCCT
GGAAAAGTCATCGCGGAATAAATTAATTAAGTGCTTTGAAAACGAGAACC
ATTCAGTTCAGTTGCATTGCTGATTTACGGCAACTGTCAGAAAGTATAGC
GCCGCGTTCAGCACTTCACTGTCTATACATCCGAATGGATTTCACGGACC
ATTGCACACTGCTCCCACCCACAGGAGCCACATACTCCATGCCCAGGGTT
CTCCTCTGTTGCCCCAGGGTCGTGGAAACATCATTTACGATATAATTCTT
ATTGAAATACACATTTGAATTAACAGTTCCCCCCGTCTCGATGGAATGAG
ATGGGATAGGATGCGATGGGATGGGCTAAAATGGGTTGGATAGTAGGCCA
GGCCAGTTGAACTGAGATGAGGCTGGAAAAGGGAGTGCTTAGCAGGCAGC
TTAATGAATTCATGTTCGGACACAGTATGCACACATCTATAGGGATGACC
ACGGACTCCCAGTTCCAGCGACGGCCTCTTTTTGTGTTCCTGTATTTTTA
ATTATACACACGTCGTAGCCATTACATTCCATTCGGTATTGTTGTCGCTA
CATAGGTGACCTCCTGCACTTCAAAAGTATTTGCACTGCATTTCGGCTTG
AAAGTTTCTAAAGCCGCACATTGGAATTTTTGAATAAATAAGTATATATG
GATAACTCCCTCCAAGGGCAAACAGTAGTATAGAAGATATAATTCGTTCT
TTTCCTCCTCAACTTACATGTTTTCCTAGCCCTTGTAGGCCATAAAATGT
TTCGAGTGTGGTTCCACCTGCAATCCTTATTCGCATTCGCCATGCCAGTT
GCCCGGGTGTGACAGCAGGAGCAGACATTTGGCTCCTGGCTGTGGGTGTG
GATTTGGCAGAGACTGGGGCTCCGGATCCTCAGAAACCAACTCCCATCAA
CGGCATCAACATATTACTCGTACCATCATCGATGCCAGGCGGCAAACGAA
TATCCAGCCGAAATGTTTGGTTTAATTGGTTTTGTGTTCAGCATTGAATG
GTTTATGGGCCGCTTGTGTCTGTCGATGTTATTGTTGGCGTATCCCACAT
TCTGGGGGATGGGAGATGCCTTTGGACCGCCATGTTCCTTGCCGCAAACT
CTTCCAGCCACGTGTACTAGAACGATGTGTCGTTTTGTCAGATTCGGTAA
TGTAAATTCAGACATATCCTTGTTTTACCTACATTCGCATATAACTTATG
TTCCCTCCACTCCTACCCACCACTGCTCGTGGTGTCGGAGGTCTGATGTG
GTGACAGCTGTGTGTCTGTTTGTAATGGATAAGTGTTTCCCTGTTCCGTA
ATTAGCACAAGATTAGCGAACTCACAGACAGCAAACAAAGGGCTGATTTG
GCTTGTCTTTTGGCGTGATGCGTGGAATGTATGGGTGGGATATATTGTAT
AGGATTAATGGAATCTTCACTTGTCTGTTTCCCATTCAAGCCTAAAGAAA
TAATGAAGGTATATAAAAGGAGGTAAGGACTACCTGCAAAACATTTCGAA
AATAAAGGTCAAAGTAGGGCCTGGAGTCGAGCTAAGTTGTCAATGTCGTT
TGCGTCCCAGTCCAAATTCAGTTTACATTACTCGGTTACCTCAGTCCGAA
GCCACTAGACATATATTTTTTAATATTTTGTAAGGTGCGTAAATACTTAA
CATTTTTTTTTAAAGTTTATTGATCGATAAACACGGTTTGTGCAGAGATT
CCTTCCATTATGGAACGATTCGCACTGACAACCTGCATTCGCCGTGTCTG
GATCATGTCCGGATGGCTGCGCCAGGAGGCGGCAATAGCAGCCGGCATGT
TGGTGGTGCAGCGACACCAGGTTGAGCTGAGGAATGAGGAGGAGGAGGGG
CTCAAAGTCGGACAGCAGACTGCATCCAGTGGCGGTGACGTGGGCGTGGA
CTCGCAAGGAAGACTCCGCCGCGTGCGGCTGCTAGACGACTACATTGTGC
CCTTTGAATGCGGTCTTTGATTCTCGATCCCCATCTCCTGTTCACCGATA
TGGTTCTGGGCCACAGCGCAGTTAGTTCATTTCGCATTCGAAGCAGTTGG
CATTCAAGTAGTTCGATTCGTGAAACCGCTTCTCCAAATTTTGGTCAGAC
GGAATCTTCATTGTATGCGCTCTACGTGGACGGAGAACGAAAACAAATAT
TTTAATCGAAGATATAGCCCCAAAAAGCATGTTATTGTAAAATTTTATAT
TTTCACGAGTAGTTCGCGTTAATCTCGACGTTTTAGCGACATTAAAATTA
AACAATCAATGGTGAACACTTTTTATGGTTTACTGAGCTTATAAATCGAG
ATTGGAATATTTCCGAGATTCCATAAAAAGTTGGAACTAGCCTGGAATTA
AATGGCATCCGTTTGAAAGGCTTTTAAATACCCATTACTCATGAAGTGGA
AGTGGAATCTTGATGGAAATGTGCAAAAAAAAAAAAAAAAAAA
GH07964.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:37:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33293-RA | 687 | CG33293-RA | 113..687 | 2744..3318 | 2875 | 100 | Plus |
CG33293-RA | 687 | CG33293-RA | 1..114 | 2571..2684 | 570 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 1065514..1068987 | 3474..1 | 17370 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:37:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:10:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5239835..5243323 | 3489..1 | 17415 | 99.9 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 4980666..4984154 | 3489..1 | 17415 | 99.9 | Minus |
Blast to na_te.dros performed 2019-03-16 10:10:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 918..970 | 2455..2403 | 121 | 69.8 | Minus |
Bari1 | 1728 | Bari1 DMBARI1 1728bp AKA(S55767) Derived from X67681 (g7640) (Rel. 36, Last updated, Version 6). | 1416..1496 | 1699..1615 | 118 | 63.5 | Minus |
GH07964.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:11:54 Download gff for
GH07964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 1065514..1068987 | 1..3474 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:28:59 Download gff for
GH07964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33293-RA | 1..261 | 2760..3020 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:57:06 Download gff for
GH07964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33293-RA | 1..261 | 2760..3020 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:02:24 Download gff for
GH07964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33293-RA | 1..261 | 2760..3020 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:58:26 Download gff for
GH07964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33293-RA | 1..261 | 2760..3020 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:29:13 Download gff for
GH07964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33293-RA | 1..88 | 2589..2676 | 100 | == | Plus |
CG33293-RA | 89..669 | 2737..3318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:28:59 Download gff for
GH07964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33293-RA | 1..88 | 2589..2676 | 100 | == | Plus |
CG33293-RA | 89..661 | 2737..3310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:06 Download gff for
GH07964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33293-RA | 1..88 | 2589..2676 | 100 | == | Plus |
CG33293-RA | 89..661 | 2737..3310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:02:24 Download gff for
GH07964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33293-RA | 1..88 | 2589..2676 | 100 | == | Plus |
CG33293-RA | 89..669 | 2737..3318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:58:26 Download gff for
GH07964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33293-RA | 1..88 | 2589..2676 | 100 | == | Plus |
CG33293-RA | 89..661 | 2737..3310 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:11:54 Download gff for
GH07964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5239850..5243323 | 1..3474 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:11:54 Download gff for
GH07964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5239850..5243323 | 1..3474 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:11:54 Download gff for
GH07964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5239850..5243323 | 1..3474 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:06 Download gff for
GH07964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1065572..1069045 | 1..3474 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:40:21 Download gff for
GH07964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4980681..4984154 | 1..3474 | 100 | | Minus |
GH07964.hyp Sequence
Translation from 2012 to 2350
> GH07964.hyp
MFGLIGFVFSIEWFMGRLCLSMLLLAYPTFWGMGDAFGPPCSLPQTLPAT
CTRTMCRFVRFGNVNSDISLFYLHSHITYVPSTPTHHCSWCRRSDVVTAV
CLFVMDKCFPVP*
Sequence GH07964.hyp has no blast hits.
GH07964.pep Sequence
Translation from 2759 to 3019
> GH07964.pep
MERFALTTCIRRVWIMSGWLRQEAAIAAGMLVVQRHQVELRNEEEEGLKV
GQQTASSGGDVGVDSQGRLRRVRLLDDYIVPFECGL*
GH07964.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33293-PA | 86 | CG33293-PA | 1..86 | 1..86 | 441 | 100 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:20:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA30106-PA | 82 | GA30106-PA | 1..82 | 1..86 | 236 | 53.5 | Plus |
Dpse\GA25916-PA | 87 | GA25916-PA | 1..87 | 1..86 | 174 | 46.6 | Plus |