Clone GH07971 Report

Search the DGRC for GH07971

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:79
Well:71
Vector:pOT2
Associated Gene/TranscriptProsbeta4R2-RA
Protein status:GH07971.pep: gold
Preliminary Size:1394
Sequenced Size:1321

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17302 2001-01-01 Release 2 assignment
CG9880 2001-01-01 Release 2 assignment
CG17302 2002-05-15 Blastp of sequenced clone
CG17302 2008-04-29 Release 5.5 accounting
CG17302 2008-08-15 Release 5.9 accounting
CG17302 2008-12-18 5.12 accounting

Clone Sequence Records

GH07971.complete Sequence

1321 bp (1321 high quality bases) assembled on 2002-05-15

GenBank Submission: AY119488

> GH07971.complete
AATATTTCAAAAGTAAACACATAATATTCACAATAGTGTATCACTTTAAT
AAAATTTTTGGTTACCATGGCGATGGAAACTATTTTGGGGATCAAGGGAC
CAGACTTTGTGATGCTAGCATCAGATACAATGCAGGCCAAATCGCTGGTC
TTCATGAAAGATGACCAATCAAAAATCCACCGACTATCAGACTTCAATAT
GATGGCCACGGTGGGTGATGGTGGCGATACCATTCAGTTCACCGACTTCA
TATCCAAAAATTTGCATCTGTACAAGATTTCCCACGGATACCATCTAAGT
GCGAAGTCAGCTGCCCATTTTACCAGGAAAACACTGGCGGATTATATAAG
GACCAACACCAGATACCAGGTGGCAATGCTCCTGGCAGGATACGATGCGG
TTGAGGGACCTGACCTCCACTACATCGACTCCTATGGCGCTGCTCAGTCA
ATCAATCATGCAGGTCATGGTTGGGGCAGCATGTTCTGTGGCAGCATTCT
GCAGAGATATTGGAACTCGAAGCTCAGCCAAGAGGATGCCTACTCGCTGA
TGAAGAAGTGCGTCCTGGAGATCCAAAGGCGACTGATCATCAACCAGCGG
AACTTTGAGGTGTATGTAGTGGACAGCAAGGGAATGCGCAAGATGGAGGC
CATCAATCCAGGATCCCTAAACAAGGAGTCGATAAGCCTGAGTTGGTAAA
GCGGAAAACATTAAAGCCATGCTCGGTGCAACTCCTTTGCTTCATAAAGC
ATCCTTTAATGCCTAATAATTGTGCAGTTGGTTTTTGGCTAACTTTCACT
GCGATGCTCGAACAACTTCCCAGGGATTAGTTGACGTGACCGGTTGGATT
TGAGTGGTCAGTCGGAAGAGGAGGAGAAACGACAGCCAGCCAAGTTGCCA
AGTTTGCTCGAGGGCGGCTGCGTATGGATGGGGATTCAATTTAAGTTGTG
GGGACTCCCCCATGATGACCATGCGTGGCAGGAGTGCACACACAGGAAAA
GAAAGGAGTCCATAAAAATACTGAAAAGAAACGAGGGATAAGAAAAACCA
AGCGGCAGTGGCAAAAGTTTCCAATGCACTTAACACTCTGTTCCGAAGGA
TGGAATCGAGGAAAAAACTGTCAGTGGCATTGGCAACACATTTATTAATG
TGTCAATCGGATTGAAGACTTTCCAAGCCAACGGGAAACGATAAAGTTTT
TAGACAGAAAGAGATCCGTGGCTGGGATTACGGTTACGCTGTTGCGACAA
ATTATAAAAAATGCTCTTGGTCAGTTTTTCGTTTGGAATAAAAGAGGAAA
TACAAAAAAAAAAAAAAAAAA

GH07971.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R2-RA 1303 Prosbeta4R2-RA 1..1303 1..1303 6515 100 Plus
Or23a-RA 1286 Or23a-RA 1219..1286 1..68 340 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2655388..2656101 163..876 3480 99.2 Plus
chr2L 23010047 chr2L 2660180..2660608 875..1303 2130 99.8 Plus
chr2L 23010047 chr2L 2655164..2655326 1..163 800 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:37:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2655618..2656331 163..876 3570 100 Plus
2L 23513712 2L 2660402..2660831 875..1304 2150 100 Plus
2L 23513712 2L 2655394..2655556 1..163 815 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2655618..2656331 163..876 3570 100 Plus
2L 23513712 2L 2660402..2660831 875..1304 2150 100 Plus
2L 23513712 2L 2655394..2655556 1..163 815 100 Plus
Blast to na_te.dros performed on 2019-03-16 14:21:16 has no hits.

GH07971.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:22:08 Download gff for GH07971.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2655164..2655326 1..163 99 -> Plus
chr2L 2655389..2656101 164..876 99 -> Plus
chr2L 2660182..2660608 877..1303 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:26:02 Download gff for GH07971.complete
Subject Subject Range Query Range Percent Splice Strand
CG17302-RA 1..633 67..699 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:51:58 Download gff for GH07971.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R2-RA 1..633 67..699 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:05:42 Download gff for GH07971.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R2-RA 1..633 67..699 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:44:35 Download gff for GH07971.complete
Subject Subject Range Query Range Percent Splice Strand
CG17302-RA 1..633 67..699 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:26:30 Download gff for GH07971.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R2-RA 1..633 67..699 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:29:59 Download gff for GH07971.complete
Subject Subject Range Query Range Percent Splice Strand
CG17302-RA 1..1303 1..1303 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:51:58 Download gff for GH07971.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R2-RA 1..1303 1..1303 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:05:42 Download gff for GH07971.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R2-RB 1..876 1..876 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:44:35 Download gff for GH07971.complete
Subject Subject Range Query Range Percent Splice Strand
CG17302-RA 1..1303 1..1303 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:30 Download gff for GH07971.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R2-RB 1..876 1..876 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:22:08 Download gff for GH07971.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2655394..2655556 1..163 100 -> Plus
2L 2655619..2656331 164..876 100 -> Plus
2L 2660404..2660830 877..1303 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:22:08 Download gff for GH07971.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2655394..2655556 1..163 100 -> Plus
2L 2655619..2656331 164..876 100 -> Plus
2L 2660404..2660830 877..1303 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:22:08 Download gff for GH07971.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2655394..2655556 1..163 100 -> Plus
2L 2655619..2656331 164..876 100 -> Plus
2L 2660404..2660830 877..1303 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:05:42 Download gff for GH07971.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2655394..2655556 1..163 100 -> Plus
arm_2L 2655619..2656331 164..876 100 -> Plus
arm_2L 2660404..2660830 877..1303 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:16:57 Download gff for GH07971.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2655619..2656331 164..876 100 -> Plus
2L 2660404..2660830 877..1303 100   Plus
2L 2655394..2655556 1..163 100 -> Plus

GH07971.pep Sequence

Translation from 66 to 698

> GH07971.pep
MAMETILGIKGPDFVMLASDTMQAKSLVFMKDDQSKIHRLSDFNMMATVG
DGGDTIQFTDFISKNLHLYKISHGYHLSAKSAAHFTRKTLADYIRTNTRY
QVAMLLAGYDAVEGPDLHYIDSYGAAQSINHAGHGWGSMFCGSILQRYWN
SKLSQEDAYSLMKKCVLEIQRRLIINQRNFEVYVVDSKGMRKMEAINPGS
LNKESISLSW*

GH07971.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13881-PA 210 GF13881-PA 1..210 1..210 1030 88.1 Plus
Dana\GF24340-PA 205 GF24340-PA 1..203 3..205 655 56.2 Plus
Dana\GF20768-PA 212 GF20768-PA 1..201 3..204 555 49.5 Plus
Dana\GF23798-PA 272 GF23798-PA 42..240 6..194 153 24.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24870-PA 210 GG24870-PA 1..210 1..210 1102 96.7 Plus
Dere\GG20111-PA 201 GG20111-PA 1..199 3..201 639 55.3 Plus
Dere\GG24868-PA 215 GG24868-PA 1..205 3..207 574 46.8 Plus
Dere\GG18789-PA 307 GG18789-PA 50..230 5..189 174 26.5 Plus
Dere\GG15711-PA 272 GG15711-PA 42..198 6..166 149 25.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22171-PA 222 GH22171-PA 1..207 3..209 837 70 Plus
Dgri\GH11159-PA 222 GH11159-PA 1..207 3..209 829 69.6 Plus
Dgri\GH11559-PA 206 GH11559-PA 1..199 3..201 670 58.3 Plus
Dgri\GH11158-PA 397 GH11158-PA 1..118 46..163 229 34.7 Plus
Dgri\GH16666-PA 272 GH16666-PA 42..198 6..166 163 26.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R2-PB 210 CG17302-PB 1..210 1..210 1094 100 Plus
Prosbeta4R2-PA 210 CG17302-PA 1..210 1..210 1094 100 Plus
Prosbeta4-PB 201 CG17331-PB 1..199 3..201 609 55.3 Plus
Prosbeta4-PA 201 CG17331-PA 1..199 3..201 609 55.3 Plus
Prosbeta4R1-PA 215 CG17301-PA 1..205 3..207 525 43.9 Plus
Prosbeta5R1-PA 315 CG9868-PA 73..258 5..193 145 23.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17870-PA 221 GI17870-PA 1..207 3..209 823 69.6 Plus
Dmoj\GI17050-PA 206 GI17050-PA 1..199 3..201 690 60.3 Plus
Dmoj\GI17867-PA 214 GI17867-PA 1..196 3..198 466 42.3 Plus
Dmoj\GI15360-PA 313 GI15360-PA 46..203 5..166 184 29.6 Plus
Dmoj\GI11352-PA 270 GI11352-PA 41..198 5..166 157 25.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26572-PA 210 GL26572-PA 1..210 1..210 969 81.9 Plus
Dper\GL19338-PA 214 GL19338-PA 1..207 3..201 613 53.1 Plus
Dper\GL27233-PA 208 GL27233-PA 1..206 3..207 438 39.3 Plus
Dper\GL24711-PA 272 GL24711-PA 42..198 6..166 151 26.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28985-PA 210 GA28985-PA 1..210 1..210 969 81.9 Plus
Dpse\GA14463-PA 206 GA14463-PA 1..199 3..201 663 57.3 Plus
Dpse\GA26779-PA 208 GA26779-PA 1..206 3..207 435 39.3 Plus
Dpse\GA17382-PA 272 GA17382-PA 42..198 6..166 150 26.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18354-PA 210 GM18354-PA 1..210 1..210 1127 99.5 Plus
Dsec\GM17161-PA 201 GM17161-PA 1..199 3..201 635 54.8 Plus
Dsec\GM18352-PA 211 GM18352-PA 1..195 3..197 528 44.6 Plus
Dsec\GM12440-PA 307 GM12440-PA 50..207 5..166 157 27.8 Plus
Dsec\GM25498-PA 272 GM25498-PA 42..198 6..166 150 25.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23168-PA 210 GD23168-PA 1..210 1..210 1127 99.5 Plus
Dsim\GD21900-PA 201 GD21900-PA 1..199 3..201 638 54.8 Plus
Dsim\GD23166-PA 211 GD23166-PA 1..195 3..197 535 45.1 Plus
Dsim\GD16756-PA 307 GD16756-PA 50..207 5..166 157 27.8 Plus
Dsim\GD14518-PA 272 GD14518-PA 42..198 6..166 150 25.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17369-PA 193 GJ17369-PA 3..179 33..209 690 67.2 Plus
Dvir\GJ17300-PA 206 GJ17300-PA 1..199 3..201 680 59.8 Plus
Dvir\GJ17367-PA 231 GJ17367-PA 1..196 3..198 551 49.5 Plus
Dvir\GJ16628-PA 304 GJ16628-PA 46..203 5..166 162 26.5 Plus
Dvir\GJ11606-PA 270 GJ11606-PA 40..196 6..166 150 25.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24489-PA 210 GK24489-PA 1..210 1..210 960 82.4 Plus
Dwil\GK15122-PA 207 GK15122-PA 1..200 3..202 664 56.5 Plus
Dwil\GK24488-PA 212 GK24488-PA 4..199 1..196 471 43.4 Plus
Dwil\GK10550-PA 272 GK10550-PA 41..240 5..194 169 26.2 Plus
Dwil\GK25153-PA 353 GK25153-PA 52..210 5..166 158 26.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18168-PA 210 GE18168-PA 1..210 1..210 1119 98.6 Plus
Dyak\GE13168-PA 201 GE13168-PA 1..199 3..201 639 55.3 Plus
Dyak\GE18166-PA 215 GE18166-PA 1..205 3..207 598 47.3 Plus
Dyak\GE14876-PA 1119 GE14876-PA 1033..1107 121..195 176 41.3 Plus
Dyak\GE14911-PA 314 GE14911-PA 18..74 130..186 169 47.4 Plus

GH07971.hyp Sequence

Translation from 66 to 698

> GH07971.hyp
MAMETILGIKGPDFVMLASDTMQAKSLVFMKDDQSKIHRLSDFNMMATVG
DGGDTIQFTDFISKNLHLYKISHGYHLSAKSAAHFTRKTLADYIRTNTRY
QVAMLLAGYDAVEGPDLHYIDSYGAAQSINHAGHGWGSMFCGSILQRYWN
SKLSQEDAYSLMKKCVLEIQRRLIINQRNFEVYVVDSKGMRKMEAINPGS
LNKESISLSW*

GH07971.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R2-PB 210 CG17302-PB 1..210 1..210 1094 100 Plus
Prosbeta4R2-PA 210 CG17302-PA 1..210 1..210 1094 100 Plus
Prosbeta4-PB 201 CG17331-PB 1..199 3..201 609 55.3 Plus
Prosbeta4-PA 201 CG17331-PA 1..199 3..201 609 55.3 Plus
Prosbeta4R1-PA 215 CG17301-PA 1..205 3..207 525 43.9 Plus