Clone GH08043 Report

Search the DGRC for GH08043

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:80
Well:43
Vector:pOT2
Associated Gene/TranscriptCG3223-RA
Protein status:GH08043.pep: gold
Preliminary Size:1300
Sequenced Size:1488

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3223 2001-01-01 Release 2 assignment
CG3223 2002-05-17 Blastp of sequenced clone
CG3223 2003-01-01 Sim4 clustering to Release 3
CG3223 2008-04-29 Release 5.5 accounting
CG3223 2008-08-15 Release 5.9 accounting
CG3223 2008-12-18 5.12 accounting

Clone Sequence Records

GH08043.complete Sequence

1488 bp (1488 high quality bases) assembled on 2002-05-17

GenBank Submission: AY118753

> GH08043.complete
AACAAAACAAAATCACCCAGACAAAATAGTGAATTACAAATATTACGCAG
ATTCTACATCAACGCACTATGCATACCGTGTACGCGCTTCTGAAGAACAA
GCTGAGCGATGTGCATCCCCTACACAACATCGATCTGACGCGGGATGTGG
CCTACCTAAAGGCGGTGGTGACCAAAGAGATGCACTTGCAATTCGACGCC
AGCGAGTTGGAGATCATCCACCACGGACGCGTGCTGGAGGACGCAGACAC
CCTCAACCGAACGCTGCAGCCCAACGCCGTGATCCACTGCTTTCAGAAGA
TTAAACGTTACTCGCCGTATGTGCCGCCAGCCGCCGCCGAAATCAACACG
AAGCATATTCAAGAGCTGTTTTCGTTGACCTCGCACCTGCAAATCAGCGT
TACCTCGCGGTTCAACATTCTGCAGAAGATACTCGCTGAGTATCCGGAAT
TTAGGCGAAATCTGGGCGCCCAGGCCCTTATTCGCGACTCCGTACTGTTC
AACATGCTGCACGAGCCGGAAGTGGTCCAAAATCTCGTTAAAGATTATCC
CCTCATCTGCGAGGCCGCTCCATTCATAGTGGACACCATTCGCAAGGAGC
TAGCCAGAAATAGCTCGGCCACGCAGTTGCAGGAGCAAGCTGCTTCGGAG
TCTACTACTTCGTCAGAGGAGGAAAACTCTCTGGGTGCAGGCAGCAGCAG
CAGTGGTGGAAGCAGCAGCACAGCCGTGGCAGCTGCCGCGGCCGCCAATC
GGCGTGATGAGATGGCCAACATCCGTCAGATTAGCCGCCAGCAACTGGCT
AACGCATTGGCTAACGTGACCCCGTTTAATTCACTGTCGAATATTGCGCA
GAGAAACGCGGACGAGGCCGTGCAGGGTGATGAAAGACCTAGAACCACCT
CGGCGCCATTAGCAGGCGTTGGAGGAGCAGCGGGAACAGGCGCAGGAAGC
AGCAGTGGAGCCATCAGCAGCGGATCCATATCCTCAGAGTTGCTCCGCAA
CGAGCTGGCCCGCGCTTTTCAGTCCCTGTCGCAGGATCAACCGGCGCCTG
TGGAGAACATGGAGGTGGAGTCCGGAGAAGGACCAGTACCAGAGCAAGCC
GCCACAGCACCAGCCGATGATGTAGATGACGAGGACGATGGTGGAGACGA
CAGTGATGTGCTGCCACGCCGCTACCGTCGCCATCGGTTCACCGAACAAC
TGCGTACCATGGCCGCCATGGGCTTCATTAATCACACTCAGAACGTTAGT
TATCTAGAACTTTCCGATGGGAATGTGGAACACGCTATTAATCTGCTTAT
GCTGAGCATGAATTAATAAGGATCGGAATTGACTAAAAAGCCAACATAAT
GTGCTTACTTTACGGACTTATATTTATTCTGCTGCTGAGGATTCTGAAGC
ATTAAACTCCCAACTTAAGCAAGGAATATCTCTTAATAACTTTTAATAAT
TAAATATACGTTTAGAGGAAAAAAAAAAAAAAAAAAAA

GH08043.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3223-RA 1553 CG3223-RA 86..1553 1..1468 7340 100 Plus
CG3223.a 1487 CG3223.a 66..1487 47..1468 7095 99.9 Plus
CG3223.b 1538 CG3223.b 280..1538 210..1468 6295 100 Plus
CG3223.b 1538 CG3223.b 50..259 1..210 1050 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3836222..3837062 628..1468 4205 100 Plus
chr3R 27901430 chr3R 3835746..3836163 210..627 2090 100 Plus
chr3R 27901430 chr3R 3835464..3835673 1..210 1050 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:37:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8010178..8011019 628..1469 4210 100 Plus
3R 32079331 3R 8009702..8010119 210..627 2090 100 Plus
3R 32079331 3R 8009420..8009629 1..210 1050 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7751009..7751850 628..1469 4210 100 Plus
3R 31820162 3R 7750533..7750950 210..627 2090 100 Plus
3R 31820162 3R 7750251..7750460 1..210 1050 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:13:50 has no hits.

GH08043.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:14:30 Download gff for GH08043.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3835464..3835673 1..210 100 -> Plus
chr3R 3835747..3836163 211..627 100 -> Plus
chr3R 3836222..3837062 628..1468 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:26:11 Download gff for GH08043.complete
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 1..1248 69..1316 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:49:26 Download gff for GH08043.complete
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 1..1248 69..1316 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:58:05 Download gff for GH08043.complete
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 1..1248 69..1316 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:42:05 Download gff for GH08043.complete
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 1..1248 69..1316 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:04 Download gff for GH08043.complete
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 1..1248 69..1316 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:26:27 Download gff for GH08043.complete
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 50..1517 1..1468 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:49:26 Download gff for GH08043.complete
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 50..1517 1..1468 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:05 Download gff for GH08043.complete
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 21..1488 1..1468 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:42:06 Download gff for GH08043.complete
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 50..1517 1..1468 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:04 Download gff for GH08043.complete
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 21..1488 1..1468 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:30 Download gff for GH08043.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8009703..8010119 211..627 100 -> Plus
3R 8009420..8009629 1..210 100 -> Plus
3R 8010178..8011018 628..1468 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:30 Download gff for GH08043.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8009703..8010119 211..627 100 -> Plus
3R 8009420..8009629 1..210 100 -> Plus
3R 8010178..8011018 628..1468 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:30 Download gff for GH08043.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8009703..8010119 211..627 100 -> Plus
3R 8009420..8009629 1..210 100 -> Plus
3R 8010178..8011018 628..1468 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:05 Download gff for GH08043.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3835142..3835351 1..210 100 -> Plus
arm_3R 3835425..3835841 211..627 100 -> Plus
arm_3R 3835900..3836740 628..1468 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:14:20 Download gff for GH08043.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7750251..7750460 1..210 100 -> Plus
3R 7750534..7750950 211..627 100 -> Plus
3R 7751009..7751849 628..1468 100   Plus

GH08043.pep Sequence

Translation from 68 to 1315

> GH08043.pep
MHTVYALLKNKLSDVHPLHNIDLTRDVAYLKAVVTKEMHLQFDASELEII
HHGRVLEDADTLNRTLQPNAVIHCFQKIKRYSPYVPPAAAEINTKHIQEL
FSLTSHLQISVTSRFNILQKILAEYPEFRRNLGAQALIRDSVLFNMLHEP
EVVQNLVKDYPLICEAAPFIVDTIRKELARNSSATQLQEQAASESTTSSE
EENSLGAGSSSSGGSSSTAVAAAAAANRRDEMANIRQISRQQLANALANV
TPFNSLSNIAQRNADEAVQGDERPRTTSAPLAGVGGAAGTGAGSSSGAIS
SGSISSELLRNELARAFQSLSQDQPAPVENMEVESGEGPVPEQAATAPAD
DVDDEDDGGDDSDVLPRRYRRHRFTEQLRTMAAMGFINHTQNVSYLELSD
GNVEHAINLLMLSMN*

GH08043.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18153-PA 400 GF18153-PA 1..400 1..415 1365 76.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14341-PA 415 GG14341-PA 1..415 1..415 1679 94.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17333-PA 417 GH17333-PA 4..414 2..411 1250 67.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3223-PA 415 CG3223-PA 1..415 1..415 2078 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10258-PA 413 GI10258-PA 5..413 3..415 1343 74.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21478-PA 399 GL21478-PA 1..399 1..415 1467 76.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16770-PA 399 GA16770-PA 1..399 1..415 1465 76.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10993-PA 415 GM10993-PA 1..415 1..415 2129 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19963-PA 415 GD19963-PA 1..415 1..415 2136 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11064-PA 416 GJ11064-PA 4..416 2..415 1215 69 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13251-PA 412 GK13251-PA 1..412 1..415 1311 70.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24960-PA 414 GE24960-PA 1..414 1..415 1665 91.8 Plus

GH08043.hyp Sequence

Translation from 68 to 1315

> GH08043.hyp
MHTVYALLKNKLSDVHPLHNIDLTRDVAYLKAVVTKEMHLQFDASELEII
HHGRVLEDADTLNRTLQPNAVIHCFQKIKRYSPYVPPAAAEINTKHIQEL
FSLTSHLQISVTSRFNILQKILAEYPEFRRNLGAQALIRDSVLFNMLHEP
EVVQNLVKDYPLICEAAPFIVDTIRKELARNSSATQLQEQAASESTTSSE
EENSLGAGSSSSGGSSSTAVAAAAAANRRDEMANIRQISRQQLANALANV
TPFNSLSNIAQRNADEAVQGDERPRTTSAPLAGVGGAAGTGAGSSSGAIS
SGSISSELLRNELARAFQSLSQDQPAPVENMEVESGEGPVPEQAATAPAD
DVDDEDDGGDDSDVLPRRYRRHRFTEQLRTMAAMGFINHTQNVSYLELSD
GNVEHAINLLMLSMN*

GH08043.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3223-PA 415 CG3223-PA 1..415 1..415 2078 100 Plus