Clone GH08048 Report

Search the DGRC for GH08048

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:80
Well:48
Vector:pOT2
Associated Gene/TranscriptCG1774-RA
Protein status:GH08048.pep: gold
Preliminary Size:1703
Sequenced Size:1754

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1774 2001-01-01 Release 2 assignment
CG1774 2001-09-19 Blastp of sequenced clone
CG1774 2003-01-01 Sim4 clustering to Release 3
CG1774 2008-04-29 Release 5.5 accounting
CG1774 2008-08-15 Release 5.9 accounting
CG1774 2008-12-18 5.12 accounting

Clone Sequence Records

GH08048.complete Sequence

1754 bp (1754 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058316

> GH08048.complete
CAGCCCAAGTGAAAGCACTTCATGTAAATCCGAACGAGCTGAGGCGTATT
ACGTATTAGGAGCTGGGAACTACACCCAAGTGCCCTGCAAGTGATTTCCC
CAAAAAATCCATGCCATTGGATCCCCCCAGTAGGCGGTTCAACTAGTTGC
AATTTCCAAGGCCCCGTCAACCTAGACACCTGGAAACGATGCTGTGTACC
TTGGCACGGAGTTTTGGAACGGCGCTGGCGAGGAGGAGCTCTTGGTCGAC
TGCCCGGCGAAGGCGACTGCTGGCCACAAGTCCCCCCCCTTTGGCGAGCC
AGCAGATGCCCAGGAGCTATACGCTAGACAACGGACCCAAGGTGAAGTCC
GATCATCGCTCTGGAACGATGGTGGAGGTGGCTCGTGTCATTCGCGAGCA
ATCCGGCGTGGACGTGGGATACCATACGATTCCCAAGCCCCGAGATCATC
TCCTGCAGCACGAGCCGAAGAGGGAGGAGCTTCCACCAAGAACTATGCTG
GATTCGCACACCACGGCCATTCTGCCCCTGAGCTCCAGTGAGCTAATCCG
CGAGAGCTACGTGAATCACCTGGGAAGGGTGAGATTGGGCCGAATTATGG
AGGAGTTGGACATGTTTGCCGTATGGATCTGCCATCGTCATGTGAAGCTG
CCCAAGCTGCCGAAGGGAGTGCCTTTGCCTTACACCTTTGTCACGTTGCT
GGTCGACAAAGTGGAGTTCACCAACCTGGAGCGGTTGCAGGTCAACCAGG
ACATCGAGATCAGTGGTCACATCTCGTGGGCGGGGCGGAGCTCCATGGAG
ATTACCATCTATGTGAGGCAGTTGGCCCACGGCGAATATATTGATGTAAC
AAAAGCAATCTTCGTCATGGTGGCCAGAAATGCCACCAATACGGGACCGG
CTCCCATTAATCCTATAGAGGTTGGCGATGAAACCGAGAAGCTCATTTGG
GAGCAGGCAGAGAAGCGGCAAAAAGTGCGCAAGTCTTCTGCCATGGACTC
AGTGTTCAACTCGCCGCCCAGGGAGCACGAACAGGCCCTCATGTACGAGA
TCCTCAAGAGAACCACCCCAGCCAATAGTATGGATCTCAACAAGCGTGTG
CTGCCGCCGAAATGCCGCTGGATGGAGGACTCTATGCAGTCTACGATGAT
TGCTCCATTTCCGGAGAACAGGAATGCGCAGAACACCATCTTTGGGGGCT
ATCTCATGCGCCAGGCCGTTGAAATCAGCTTCATAATGGCTAGCATCTAT
CTGGGCGATCGGCCCACCCTCAGGTGCATCTCGGACATTAGTTTCATGCA
CCCGGTGCATGTGGATCGGTTCCTCCAGCTCACCGCCCACGTTGTTTACG
CCGCCCAGAACTACGTCCAGCTGATGACCGTGGCCCAGATTTGGGATGCC
AAGAGCGGCAAAGTGCAGACCACCAATGTCTTCTACTTGACCTATCGGGC
GGACAAGGTGCTGGACGAAGTCCTCCCGCGATCCTACCGAGAGATGTTGT
GGTACGTCCACGGTAGGCGGAAACTCCTGGGCGCTCTGCACTTGCAGCCG
GAGTACCCCGATCCTATCGAAGTGGCCAAAGAGAGCTCAAATCATATCAG
CACTTAGAATTAGCGCTAATGTAAATCGAAGTTGTAGTTGATCCAAATAT
GTTAATCTGATGGAATTTTAACTTTATAGCTGTTATTTTATAATTTATAG
GATATATCAATGAAATAAAATTGTAGAAAGGAAAAAAAAAAAAAAAAAAA
AAAA

GH08048.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1774-RA 1919 CG1774-RA 189..1919 1..1731 8655 100 Plus
CG1774.b 1797 CG1774.b 67..1797 1..1731 8655 100 Plus
CG1774.a 1797 CG1774.a 70..1797 4..1731 8640 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27415725..27417078 378..1731 6710 99.7 Plus
chr3R 27901430 chr3R 27415291..27415668 1..378 1830 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:37:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31593366..31594721 378..1733 6780 100 Plus
3R 32079331 3R 31592932..31593309 1..378 1890 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 31334197..31335552 378..1733 6780 100 Plus
3R 31820162 3R 31333763..31334140 1..378 1890 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:14:31 has no hits.

GH08048.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:15:36 Download gff for GH08048.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27415291..27415668 1..378 98 -> Plus
chr3R 27415726..27417078 379..1731 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:26:14 Download gff for GH08048.complete
Subject Subject Range Query Range Percent Splice Strand
CG1774-RA 1..1419 189..1607 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:09:03 Download gff for GH08048.complete
Subject Subject Range Query Range Percent Splice Strand
CG1774-RA 1..1419 189..1607 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:58:18 Download gff for GH08048.complete
Subject Subject Range Query Range Percent Splice Strand
CG1774-RA 1..1419 189..1607 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:39:57 Download gff for GH08048.complete
Subject Subject Range Query Range Percent Splice Strand
CG1774-RA 1..1419 189..1607 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:21 Download gff for GH08048.complete
Subject Subject Range Query Range Percent Splice Strand
CG1774-RA 1..1419 189..1607 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:59:50 Download gff for GH08048.complete
Subject Subject Range Query Range Percent Splice Strand
CG1774-RA 189..1919 1..1731 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:09:03 Download gff for GH08048.complete
Subject Subject Range Query Range Percent Splice Strand
CG1774-RA 189..1919 1..1731 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:18 Download gff for GH08048.complete
Subject Subject Range Query Range Percent Splice Strand
CG1774-RA 189..1919 1..1731 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:39:57 Download gff for GH08048.complete
Subject Subject Range Query Range Percent Splice Strand
CG1774-RA 189..1919 1..1731 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:21 Download gff for GH08048.complete
Subject Subject Range Query Range Percent Splice Strand
CG1774-RA 130..1860 1..1731 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:15:36 Download gff for GH08048.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31592932..31593309 1..378 100 -> Plus
3R 31593367..31594719 379..1731 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:15:36 Download gff for GH08048.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31592932..31593309 1..378 100 -> Plus
3R 31593367..31594719 379..1731 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:15:36 Download gff for GH08048.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31592932..31593309 1..378 100 -> Plus
3R 31593367..31594719 379..1731 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:18 Download gff for GH08048.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27418654..27419031 1..378 100 -> Plus
arm_3R 27419089..27420441 379..1731 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:17:25 Download gff for GH08048.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31333763..31334140 1..378 100 -> Plus
3R 31334198..31335550 379..1731 100   Plus

GH08048.hyp Sequence

Translation from 188 to 1606

> GH08048.hyp
MLCTLARSFGTALARRSSWSTARRRRLLATSPPPLASQQMPRSYTLDNGP
KVKSDHRSGTMVEVARVIREQSGVDVGYHTIPKPRDHLLQHEPKREELPP
RTMLDSHTTAILPLSSSELIRESYVNHLGRVRLGRIMEELDMFAVWICHR
HVKLPKLPKGVPLPYTFVTLLVDKVEFTNLERLQVNQDIEISGHISWAGR
SSMEITIYVRQLAHGEYIDVTKAIFVMVARNATNTGPAPINPIEVGDETE
KLIWEQAEKRQKVRKSSAMDSVFNSPPREHEQALMYEILKRTTPANSMDL
NKRVLPPKCRWMEDSMQSTMIAPFPENRNAQNTIFGGYLMRQAVEISFIM
ASIYLGDRPTLRCISDISFMHPVHVDRFLQLTAHVVYAAQNYVQLMTVAQ
IWDAKSGKVQTTNVFYLTYRADKVLDEVLPRSYREMLWYVHGRRKLLGAL
HLQPEYPDPIEVAKESSNHIST*

GH08048.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1774-PB 472 CG1774-PB 1..472 1..472 2457 100 Plus
CG1774-PA 472 CG1774-PA 1..472 1..472 2457 100 Plus
CG1635-PA 448 CG1635-PA 6..440 13..445 1115 46.9 Plus
CG1638-PB 443 CG1638-PB 32..441 38..449 1053 47.3 Plus
CG13771-PA 451 CG13771-PA 9..423 25..444 934 44.4 Plus

GH08048.pep Sequence

Translation from 188 to 1606

> GH08048.pep
MLCTLARSFGTALARRSSWSTARRRRLLATSPPPLASQQMPRSYTLDNGP
KVKSDHRSGTMVEVARVIREQSGVDVGYHTIPKPRDHLLQHEPKREELPP
RTMLDSHTTAILPLSSSELIRESYVNHLGRVRLGRIMEELDMFAVWICHR
HVKLPKLPKGVPLPYTFVTLLVDKVEFTNLERLQVNQDIEISGHISWAGR
SSMEITIYVRQLAHGEYIDVTKAIFVMVARNATNTGPAPINPIEVGDETE
KLIWEQAEKRQKVRKSSAMDSVFNSPPREHEQALMYEILKRTTPANSMDL
NKRVLPPKCRWMEDSMQSTMIAPFPENRNAQNTIFGGYLMRQAVEISFIM
ASIYLGDRPTLRCISDISFMHPVHVDRFLQLTAHVVYAAQNYVQLMTVAQ
IWDAKSGKVQTTNVFYLTYRADKVLDEVLPRSYREMLWYVHGRRKLLGAL
HLQPEYPDPIEVAKESSNHIST*

GH08048.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22972-PA 464 GF22972-PA 5..464 5..471 1778 71.5 Plus
Dana\GF22971-PA 448 GF22971-PA 1..441 5..446 1124 46.7 Plus
Dana\GF15441-PA 449 GF15441-PA 27..415 52..446 989 48.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11817-PA 472 GG11817-PA 1..472 1..472 2392 93.4 Plus
Dere\GG11815-PA 448 GG11815-PA 6..441 13..446 1164 48.3 Plus
Dere\GG11816-PA 382 GG11816-PA 6..377 73..446 996 50 Plus
Dere\GG23601-PA 436 GG23601-PA 35..420 51..444 977 47.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18639-PA 422 GH18639-PA 6..411 51..457 1487 65.1 Plus
Dgri\GH18638-PA 448 GH18638-PA 52..446 58..453 1121 50 Plus
Dgri\GH13347-PA 459 GH13347-PA 46..437 51..446 1117 51.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1774-PB 472 CG1774-PB 1..472 1..472 2457 100 Plus
CG1774-PA 472 CG1774-PA 1..472 1..472 2457 100 Plus
CG1635-PA 448 CG1635-PA 6..440 13..445 1115 46.9 Plus
CG1638-PB 443 CG1638-PB 32..441 38..449 1053 47.3 Plus
CG13771-PA 451 CG13771-PA 9..423 25..444 934 44.4 Plus
CG13771-PB 184 CG13771-PB 9..128 25..144 260 46.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23399-PA 438 GI23399-PA 1..414 46..459 1467 61.8 Plus
Dmoj\GI23398-PA 442 GI23398-PA 37..441 51..456 1151 50.5 Plus
Dmoj\GI17734-PA 407 GI17734-PA 1..381 61..446 1084 50.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23636-PA 470 GL23636-PA 5..455 5..458 1686 67.6 Plus
Dper\GL23635-PA 449 GL23635-PA 55..449 58..453 1156 51 Plus
Dper\GL26200-PA 410 GL26200-PA 19..403 55..446 1012 51.3 Plus
Dper\GL26203-PA 313 GL26203-PA 1..306 103..446 678 43.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26674-PA 470 GA26674-PA 5..455 5..458 1684 67.2 Plus
Dpse\GA26673-PA 449 GA26673-PA 55..449 58..453 1160 51.3 Plus
Dpse\GA28071-PA 410 GA28071-PA 19..403 55..446 1006 51 Plus
Dpse\GA27991-PA 321 GA27991-PA 1..314 126..446 797 49.8 Plus
Dpse\GA28073-PA 269 GA28073-PA 25..266 88..336 608 51 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16435-PA 472 GM16435-PA 1..472 1..472 2464 97 Plus
Dsec\GM16432-PA 448 GM16432-PA 6..445 13..450 1143 46.4 Plus
Dsec\GM16434-PA 389 GM16434-PA 1..387 61..449 1006 48.3 Plus
Dsec\GM14023-PA 452 GM14023-PA 9..423 25..444 970 44.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21587-PA 448 GD21587-PA 6..445 13..450 1151 46.6 Plus
Dsim\GD21588-PA 399 GD21588-PA 1..390 61..449 985 47.7 Plus
Dsim\GD22557-PA 452 GD22557-PA 9..423 25..444 959 43.9 Plus
Dsim\GD21589-PA 75 GD21589-PA 1..64 1..64 293 87.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23090-PA 427 GJ23090-PA 6..414 51..459 1581 67 Plus
Dvir\GJ17560-PA 465 GJ17560-PA 51..440 53..446 1127 52.7 Plus
Dvir\GJ23089-PA 455 GJ23089-PA 59..453 58..453 1065 50.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11722-PA 468 GK11722-PA 42..460 51..472 1695 71.6 Plus
Dwil\GK15457-PA 462 GK15457-PA 43..440 54..456 1173 54.1 Plus
Dwil\GK11721-PA 453 GK11721-PA 57..453 56..453 1072 50 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10951-PA 473 GE10951-PA 2..473 1..472 2406 94.5 Plus
Dyak\GE10948-PA 448 GE10948-PA 6..445 13..450 1162 47.1 Plus
Dyak\GE10950-PA 382 GE10950-PA 6..377 73..446 995 49.5 Plus
Dyak\GE18421-PA 442 GE18421-PA 32..420 48..444 967 45.5 Plus