Clone GH08104 Report

Search the DGRC for GH08104

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:81
Well:4
Vector:pOT2
Associated Gene/TranscriptSpn42Da-RI
Protein status:GH08104.pep: gold
Sequenced Size:1368

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Spn4-RB 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

GH08104.complete Sequence

1368 bp assembled on 2010-12-09

GenBank Submission: BT125838.1

> GH08104.complete
AGACTAGGTTTACTGTAAGCAAAATTACTGAGTATGGATTATCGTTTGGT
GCCATGTGGTTGCTGGTTGCTCCCCCTGCTCGGCCTAGCCCTCTTCCCGT
TTCCACCGGTCCACACGGCTGACGTCACCATGGCTGACGCCGCCCACCAG
GAGTTCGCCCGCCGGCTGGCCCTTTTCTCTATCAACGTGTACGGCAAGCT
GTCGGGGCAGAAGCCCGGCGAGAACATCGTCTTCTCGCCCTTTTCCATCC
AGACTTGTGCGGCGATGGCCAGGCTGGGTGCAGAAAACGAGACGGCTACC
CAGCTGGACCAGGGACTGGGCTTGGCCTCTAGTGACCCAGAGCAAATCGC
ACACAGTTTTCACCAGGTGCTGGCCGCCTACCAGGACAGTCAGATCTTGC
GCATCGCCAACAAGATTTTCGTCATGGATGGCTACCAGCTGCGCCAGGAG
TTTGATCAGCTGTTATCCAAGCAGTTCCTCTCGGCGGCTCAGAGCGTGGA
CTTTTCCAAAAATGTACAAGCAGCGGCCACCATCAACAATTGGGTTGAGC
AGCGCACCAACCATCTGATCAAGGACCTTGTGCCGGCTGATGTATTGAAC
TCCGAATCGCGACTCGTCCTTGTGAACGCCATTCACTTCAAGGGCACCTG
GCAGCACCAGTTCGCCAAACACTTAACCCGCCCAGACACCTTTCACCTGG
ATGGGGAGCGAACAGTTCAGGTTCCGATGATGAGTTTAAAGGAGCGGTTC
CGCTACGCCGATCTGCCGGCGCTAGATGCCATGGCTCTGGAACTGCCCTA
CAAGGACTCAGACCTCTCTATGCTGATCGTACTGCCCAACACCAAGACGG
GTCTGCCCGCTCTGGAGGAGAAGTTGCGCCTCACGACCCTCTCGCAGATC
ACGCAGTCGTTGTACGAAACAAAGGTAGCGCTCAAATTGCCCAGGTTCAA
GGCAGAGTTCCAAGTGGAATTGTCTGAGGTTTTCCAGAAGCTGGGCATGT
CAAGGATGTTCTCCGATCAGGCTGAATTTGGAAAAATGCTACAAAGTCCG
GAGCCATTGAAAGTGTCAGCCATCATACACAAGGCCTTCATTGAAGTCAA
CGAGGAGGGAACGGAGGCTGCGGCCGCCACGGTATGGCGGGTGATGGCCG
TAGCTGCCTTCAGTCGCAAACACTTCATTGCCAACCATCCTTTTGCTTTT
TACGTGAAGACCCATTACGATCTGCCGATATTCACTGGGCGCTACTTGGG
TTAAGCAATAGGAAGCTTCCTATGAAAAAAAAAATTGAAGTTCAATAAAA
TAAAATAAACGGCAGCCACTTAATAGCTGTGATTTCGTCAAGTCGAAAAA
AAAAAAAAAAAAAAAAAA

GH08104.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2764776..2765708 990..58 4665 100 Minus
chr2R 21145070 chr2R 2763256..2763468 1345..1132 1005 99.1 Minus
chr2R 21145070 chr2R 2764570..2764713 1132..989 720 100 Minus
chr2R 21145070 chr2R 2766192..2766251 60..1 300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6877427..6878359 990..58 4665 100 Minus
2R 25286936 2R 6875904..6876119 1347..1132 1065 99.5 Minus
2R 25286936 2R 6877221..6877364 1132..989 720 100 Minus
2R 25286936 2R 6878843..6878902 60..1 300 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 6878626..6879558 990..58 4665 100 Minus
2R 25260384 2R 6877103..6877318 1347..1132 1065 99.5 Minus
2R 25260384 2R 6878420..6878563 1132..989 720 100 Minus
2R 25260384 2R 6880042..6880101 60..1 300 100 Minus
Blast to na_te.dros performed on 2019-03-17 01:16:19 has no hits.

GH08104.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:17:04 Download gff for GH08104.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2763256..2763467 1133..1345 99 <- Minus
chr2R 2764570..2764711 991..1132 100 <- Minus
chr2R 2764776..2765707 59..990 100 <- Minus
chr2R 2766194..2766251 1..58 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2010-12-10 09:34:28 Download gff for GH08104.complete
Subject Subject Range Query Range Percent Splice Strand
Spn4-RI 1..1221 34..1254 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:35:08 Download gff for GH08104.complete
Subject Subject Range Query Range Percent Splice Strand
Spn42Da-RI 1..1221 34..1254 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:54:23 Download gff for GH08104.complete
Subject Subject Range Query Range Percent Splice Strand
Spn42Da-RI 1..1221 34..1254 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 09:34:27 Download gff for GH08104.complete
Subject Subject Range Query Range Percent Splice Strand
Spn4-RI 22..1366 1..1345 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:35:08 Download gff for GH08104.complete
Subject Subject Range Query Range Percent Splice Strand
Spn42Da-RI 26..1370 1..1345 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:54:23 Download gff for GH08104.complete
Subject Subject Range Query Range Percent Splice Strand
Spn42Da-RI 26..1370 1..1345 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:17:04 Download gff for GH08104.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6877427..6878358 59..990 100 <- Minus
2R 6878845..6878902 1..58 100   Minus
2R 6875906..6876118 1133..1345 99 <- Minus
2R 6877221..6877362 991..1132 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:17:04 Download gff for GH08104.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6877427..6878358 59..990 100 <- Minus
2R 6878845..6878902 1..58 100   Minus
2R 6875906..6876118 1133..1345 99 <- Minus
2R 6877221..6877362 991..1132 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:17:04 Download gff for GH08104.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6877427..6878358 59..990 100 <- Minus
2R 6878845..6878902 1..58 100   Minus
2R 6875906..6876118 1133..1345 99 <- Minus
2R 6877221..6877362 991..1132 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:35:08 Download gff for GH08104.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2763411..2763623 1133..1345 99 <- Minus
arm_2R 2764726..2764867 991..1132 100 <- Minus
arm_2R 2764932..2765863 59..990 100 <- Minus
arm_2R 2766350..2766407 1..58 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:52:43 Download gff for GH08104.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6877105..6877317 1133..1345 99 <- Minus
2R 6878420..6878561 991..1132 100 <- Minus
2R 6878626..6879557 59..990 100 <- Minus
2R 6880044..6880101 1..58 100   Minus

GH08104.pep Sequence

Translation from 33 to 1253

> GH08104.pep
MDYRLVPCGCWLLPLLGLALFPFPPVHTADVTMADAAHQEFARRLALFSI
NVYGKLSGQKPGENIVFSPFSIQTCAAMARLGAENETATQLDQGLGLASS
DPEQIAHSFHQVLAAYQDSQILRIANKIFVMDGYQLRQEFDQLLSKQFLS
AAQSVDFSKNVQAAATINNWVEQRTNHLIKDLVPADVLNSESRLVLVNAI
HFKGTWQHQFAKHLTRPDTFHLDGERTVQVPMMSLKERFRYADLPALDAM
ALELPYKDSDLSMLIVLPNTKTGLPALEEKLRLTTLSQITQSLYETKVAL
KLPRFKAEFQVELSEVFQKLGMSRMFSDQAEFGKMLQSPEPLKVSAIIHK
AFIEVNEEGTEAAAATVWRVMAVAAFSRKHFIANHPFAFYVKTHYDLPIF
TGRYLG*

GH08104.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11763-PA 376 GF11763-PA 1..374 33..406 1562 77.3 Plus
Dana\GF11762-PA 406 GF11762-PA 8..376 40..404 750 43.2 Plus
Dana\GF11691-PA 374 GF11691-PA 7..371 40..405 719 39.6 Plus
Dana\GF13145-PA 438 GF13145-PA 7..378 37..406 597 33 Plus
Dana\GF12698-PA 390 GF12698-PA 16..376 34..392 589 35.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10790-PA 424 GG10790-PA 1..406 1..402 1755 85.3 Plus
Dere\GG21843-PA 374 GG21843-PA 7..371 40..405 759 41.5 Plus
Dere\GG10789-PA 381 GG10789-PA 1..374 33..405 725 42 Plus
Dere\GG23231-PA 404 GG23231-PA 3..390 6..392 672 38.9 Plus
Dere\GG23229-PA 401 GG23229-PA 7..377 37..404 615 36.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19862-PA 382 GH19862-PA 11..380 40..405 1233 64.2 Plus
Dgri\GH18180-PA 386 GH18180-PA 2..371 40..403 850 50.3 Plus
Dgri\GH20251-PA 377 GH20251-PA 7..371 40..405 750 40.7 Plus
Dgri\GH22013-PA 401 GH22013-PA 31..377 62..405 597 35.6 Plus
Dgri\GH21519-PA 384 GH21519-PA 23..379 47..402 567 33.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
Spn42Da-PI 406 CG9453-PI 1..406 1..406 2079 100 Plus
Spn42Da-PB 424 CG9453-PB 1..406 1..402 1897 93.1 Plus
Spn42Da-PJ 374 CG9453-PJ 1..374 33..406 1896 100 Plus
Spn42Da-PD 411 CG9453-PD 1..406 1..402 1881 92.4 Plus
Spn42Da-PF 411 CG9453-PF 1..407 1..403 1880 92.4 Plus
Spn42Da-PE 411 CG9453-PE 1..407 1..403 1880 92.4 Plus
Spn42Da-PA 392 CG9453-PA 1..374 33..402 1714 92.5 Plus
Spn42Da-PG 379 CG9453-PG 1..374 33..402 1698 91.7 Plus
Spn42Da-PL 379 CG9453-PL 1..375 33..403 1697 91.8 Plus
Spn42Da-PK 379 CG9453-PK 1..375 33..403 1697 91.8 Plus
Spn42Da-PH 379 CG9453-PH 1..375 33..403 1697 91.8 Plus
Spn55B-PA 374 CG10913-PA 7..371 40..405 759 42.1 Plus
Spn42Db-PC 388 CG9454-PC 4..374 39..405 721 42.6 Plus
Spn42De-PA 404 CG9460-PA 3..390 6..392 670 38.9 Plus
Spn42De-PB 386 CG9460-PB 15..372 46..392 663 40.2 Plus
Spn42Dc-PB 403 CG9455-PB 10..377 40..404 605 37.3 Plus
Spn42Dc-PA 403 CG9455-PA 10..377 40..404 605 37.3 Plus
Spn42Dd-PB 372 CG9456-PB 18..358 49..392 597 39.8 Plus
Spn43Aa-PA 390 CG12172-PA 29..385 47..402 571 35.8 Plus
Spn38F-PB 370 CG9334-PB 17..354 48..392 531 35.5 Plus
Spn42Db-PD 286 CG9454-PD 4..281 39..316 530 40.7 Plus
Spn28F-PA 375 CG8137-PA 17..359 48..392 529 35 Plus
Spn38F-PA 372 CG9334-PA 17..356 48..392 518 35.3 Plus
Spn43Ab-PB 393 CG1865-PB 13..376 29..392 490 32.2 Plus
nec-PA 476 CG1857-PA 110..458 48..393 475 32.8 Plus
Spn28B-PB 378 CG6717-PB 22..360 53..391 443 33 Plus
Spn28B-PA 378 CG6717-PA 22..360 53..391 443 33 Plus
Spn47C-PC 382 CG7722-PC 17..380 47..405 440 27.7 Plus
Spn47C-PB 382 CG7722-PB 17..380 47..405 440 27.7 Plus
Spn47C-PA 382 CG7722-PA 17..380 47..405 440 27.7 Plus
Spn28Da-PB 384 CG31902-PB 14..368 45..403 421 30.8 Plus
Spn28Db-PB 377 CG33121-PB 20..367 45..403 407 29.7 Plus
Spn88Eb-PA 426 CG6687-PA 41..418 48..404 359 28.4 Plus
Spn43Ad-PA 407 CG1859-PA 39..392 48..391 349 28.4 Plus
Spn88Ea-PB 427 CG18525-PB 43..419 48..404 342 27.2 Plus
Spn88Ea-PA 427 CG18525-PA 43..419 48..404 342 27.2 Plus
Spn27A-PB 447 CG11331-PB 85..427 56..392 340 28.5 Plus
Spn27A-PA 447 CG11331-PA 85..427 56..392 340 28.5 Plus
Spn53F-PB 379 CG10956-PB 26..364 52..391 327 23.4 Plus
Spn31A-PA 382 CG4804-PA 18..369 52..393 294 26.2 Plus
Spn28Dc-PA 536 CG7219-PA 126..493 62..367 286 26.3 Plus
Spn77Ba-PC 450 CG6680-PC 92..430 59..391 250 25.3 Plus
Spn77Ba-PB 450 CG6680-PB 92..430 59..391 250 25.3 Plus
Spn77Ba-PA 450 CG6680-PA 92..430 59..391 250 25.3 Plus
Spn100A-PA 649 CG1342-PA 381..614 175..391 205 24.3 Plus
Spn75F-PB 356 CG32203-PB 22..297 48..328 188 22.5 Plus
Acp76A-PB 387 CG3801-PB 39..305 63..330 156 22.3 Plus
Acp76A-PA 388 CG3801-PA 39..305 63..330 156 22.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19810-PA 401 GI19810-PA 11..377 40..402 1226 65.4 Plus
Dmoj\GI10134-PA 406 GI10134-PA 9..378 40..404 831 47.2 Plus
Dmoj\GI10133-PA 403 GI10133-PA 1..363 33..391 828 47.5 Plus
Dmoj\GI19420-PA 376 GI19420-PA 7..371 40..405 746 40.4 Plus
Dmoj\GI10132-PA 308 GI10132-PA 1..275 131..402 608 45.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10965-PA 393 GL10965-PA 1..374 33..402 1245 67.4 Plus
Dper\GL10964-PA 379 GL10964-PA 8..373 43..402 793 44.7 Plus
Dper\GL10534-PA 376 GL10534-PA 7..371 40..405 732 40.4 Plus
Dper\GL11126-PA 421 GL11126-PA 54..407 48..392 682 40.7 Plus
Dper\GL13962-PA 395 GL13962-PA 28..382 48..395 639 39.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21798-PA 393 GA21798-PA 1..374 33..402 1255 67.9 Plus
Dpse\GA24549-PA 379 GA24549-PA 8..373 43..402 793 44.1 Plus
Dpse\GA10637-PA 376 GA10637-PA 7..371 40..405 741 41 Plus
Dpse\GA24618-PA 407 GA24618-PA 41..393 48..392 675 40.5 Plus
Dpse\GA26905-PA 417 GA26905-PA 54..403 48..392 639 39.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11074-PA 321 GM11074-PA 1..320 1..320 1536 92.8 Plus
Dsec\GM20841-PA 347 GM20841-PA 1..329 78..402 1495 87.8 Plus
Dsec\GM21844-PA 374 GM21844-PA 7..371 40..405 778 42.1 Plus
Dsec\GM20839-PA 388 GM20839-PA 1..374 33..405 728 40.9 Plus
Dsec\GM20903-PA 403 GM20903-PA 7..377 37..404 622 37 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10292-PA 424 GD10292-PA 1..406 1..402 1849 89.2 Plus
Dsim\GD11338-PA 374 GD11338-PA 7..371 40..405 778 42.1 Plus
Dsim\GD10291-PA 388 GD10291-PA 1..374 33..405 729 42.2 Plus
Dsim\GD10433-PA 598 GD10433-PA 245..584 64..392 665 41.5 Plus
Dsim\GD10430-PA 403 GD10430-PA 7..377 37..404 618 36.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18486-PA 377 GJ18486-PA 11..377 40..406 1342 68.1 Plus
Dvir\GJ23351-PA 348 GJ23351-PA 1..335 78..406 794 50.4 Plus
Dvir\GJ22484-PA 376 GJ22484-PA 7..371 40..405 757 40.4 Plus
Dvir\GJ17545-PA 407 GJ17545-PA 1..378 31..406 632 35 Plus
Dvir\GJ15151-PA 387 GJ15151-PA 26..382 47..402 557 34.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20760-PA 433 GK20760-PA 45..411 40..402 1266 65.7 Plus
Dwil\GK20758-PA 404 GK20758-PA 9..398 9..405 1143 55.1 Plus
Dwil\GK20759-PA 401 GK20759-PA 9..393 9..403 1140 55.7 Plus
Dwil\GK20757-PA 332 GK20757-PA 1..330 78..405 929 53.8 Plus
Dwil\GK20756-PA 361 GK20756-PA 16..344 40..366 858 50.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24388-PA 392 GE24388-PA 1..374 33..402 1688 86.4 Plus
Dyak\GE11922-PA 374 GE11922-PA 7..371 40..405 769 41.8 Plus
Dyak\GE24378-PA 351 GE24378-PA 5..324 40..359 708 44.1 Plus
Dyak\GE19082-PA 386 GE19082-PA 15..372 46..392 649 39.1 Plus
Dyak\GE19080-PA 401 GE19080-PA 7..377 37..404 616 35.6 Plus

GH08104.hyp Sequence

Translation from 33 to 1253

> GH08104.hyp
MDYRLVPCGCWLLPLLGLALFPFPPVHTADVTMADAAHQEFARRLALFSI
NVYGKLSGQKPGENIVFSPFSIQTCAAMARLGAENETATQLDQGLGLASS
DPEQIAHSFHQVLAAYQDSQILRIANKIFVMDGYQLRQEFDQLLSKQFLS
AAQSVDFSKNVQAAATINNWVEQRTNHLIKDLVPADVLNSESRLVLVNAI
HFKGTWQHQFAKHLTRPDTFHLDGERTVQVPMMSLKERFRYADLPALDAM
ALELPYKDSDLSMLIVLPNTKTGLPALEEKLRLTTLSQITQSLYETKVAL
KLPRFKAEFQVELSEVFQKLGMSRMFSDQAEFGKMLQSPEPLKVSAIIHK
AFIEVNEEGTEAAAATVWRVMAVAAFSRKHFIANHPFAFYVKTHYDLPIF
TGRYLG*

GH08104.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
Spn42Da-PI 406 CG9453-PI 1..406 1..406 2079 100 Plus
Spn42Da-PB 424 CG9453-PB 1..406 1..402 1897 93.1 Plus
Spn42Da-PJ 374 CG9453-PJ 1..374 33..406 1896 100 Plus
Spn42Da-PD 411 CG9453-PD 1..406 1..402 1881 92.4 Plus
Spn42Da-PF 411 CG9453-PF 1..407 1..403 1880 92.4 Plus