Clone GH08155 Report

Search the DGRC for GH08155

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:81
Well:55
Vector:pOT2
Associated Gene/TranscriptCG5888-RA
Protein status:GH08155.pep: gold
Preliminary Size:1954
Sequenced Size:1896

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5888 2001-01-01 Release 2 assignment
CG5888 2002-06-07 Blastp of sequenced clone
CG5888 2003-01-01 Sim4 clustering to Release 3
CG5888 2008-04-29 Release 5.5 accounting
CG5888 2008-08-15 Release 5.9 accounting
CG5888 2008-12-18 5.12 accounting

Clone Sequence Records

GH08155.complete Sequence

1896 bp (1896 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119489

> GH08155.complete
CTGTGTGTTGAACGCTCTGGTTTTTCATTTCGAATGCGTGGGATCGGCTC
AATAATATAGACTTAACTCGCCCTATACCAAAATAATCAACTAATTGCCA
TATTTTGAGAATTCATTCCATTATTTTTGTTTGCGATCAGTCTGCTCGGA
GTCCTAGCCTCAGGATGTGGTGGCTACTTCTTTTGCTGTCCCTAATTGCG
CCGTCGTGGCAGGAGAATGCCACAGTGATCAATCCAAGTTATGTGACCAA
AGCTGGTTGTGAGGCATTGGTCAAGGAACCAAATCTCTGCGAGTGCCAGG
AGCAGGAGATCAAGTGCGAGAACCTTCAATTGCACAGTGATAATTTGCAG
TTATACGGCATTAGCTGTAGTATATTCGATGCCAGGGGATTCGGCTATAT
ACCACCGCTTAAGGTGGGCAATATCGGTTCCCTGATCGTTCAAAACTGTG
CCATACCAAATGCAGAAAGCATCAAATACTTGCTCAGTAAGCTGGGTGTT
AGCAACTACACCGAACTGGAGATCTTCAACTATTTCGATCCCAAGAAAAC
GGATCGAGGCGAGGTCCTGCAGCAACACTACACGGATCACGAGAGTCTGA
AGAAAGTATCCATCATTGGATTCAAGTCAACACTGCCTGAAAATTTTCTT
GAAAACCTGCCGGCACTACAACAACTCTCCTTAAAGGGAAGCAGTGATTT
GCCCGGTAACATTTTGCATCCTTTGAAAAATCTAACCCATTTGGAAATTG
TGGTCAAGAATTTGGGCAAGGTGTCGGGTGCAATATTTGCAAAGCAATCG
AAGCTAAAACATCTGATGATCGACTGCGATGCCAAGAACAGTAGTGTCGA
AATGTCCGCTTTTGGACCCCAAGAACTCTGGCACATGACCGAACTTCAGT
CGATCGAGCTCTTCAATTGCGGTGATAATGTGCCAACCGAGTTGTTCTGG
ATGTCGGAGCAATTGGCATACATTGGAATAAGGAGCAACATCAGCTATTT
GAGCAAGGACTTCCTTAAGGTGCAAAAGAAACTGCTCACCTTAAGATTGG
AAAGAAACAATATTGCCAGGCTGCCCGATCAGCTTTTCAGGAACACTCCC
TTGATTTTAGAGATTCACTTGGCGTTCAATAATTTGGATCGCATTCAGAG
CGGCCTTTTTGACAAGTTAAAGAACCTACAGGTGCTGAACTTGGAGCACA
ATCCGATAACCACCATTGCCCTGAATGCCTTTACTCCCATCCCAACTGCC
CATATCTACGTGGGCAAACTCTTTAAGGCGGCGAAAAATGCCGACTGGGC
TCGATCCACGAATGCAACAATCTGCGAGGAGGAGTATATCTACGGGGTGT
GCATCTACTGCAAGCGAGATGAGTATCTGGACCACTTTGCCGACTCGGAG
AACTGCAATAAGCCAAATCCGAAGGCCAAGGATGTGCTAGCCAAGAAGGC
GTACGAAAATCAGCTGAAGGCGATGCCAACGCACTCCTGGAAAAAGGCCA
AGGAATATCCCGTTGAGGAAGAGCAGCCCTAAGCTCCAAACGGTTCGTTG
GGATTTTACGCATCAGTACTAACTAGTATATGGATATCTGAGTAGCTTAT
TTCTGAGACTATAATGAGATTAAAATAGGCTGAAGCTATTTGTTTCCCGA
ATAACTTAAAATTAATACTCCCATATATGTTCACCTGCTAAGTATCTTTT
GAAATATAACACGATTTGTATCTTTAGTGTAAAAGTTTTGAAATAGTTGC
TATCATTAAAGACTATAATTTTATGTTTGCTGATTGTAAGACTATAAAAT
CGAAAAGTTGGAAATATTACTGTATCAATAAACTTATGAAATAAAGATAT
TGAAGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH08155.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5888-RA 2005 CG5888-RA 142..2000 1..1859 9295 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 16403771..16404779 1150..142 5015 99.8 Minus
chr2L 23010047 chr2L 16403316..16403673 1506..1149 1760 99.4 Minus
chr2L 23010047 chr2L 16399008..16399359 1858..1507 1745 99.7 Minus
chr2L 23010047 chr2L 16447140..16447272 133..1 665 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:37:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16404939..16405956 1150..133 5090 100 Minus
2L 23513712 2L 16404486..16404843 1506..1149 1790 100 Minus
2L 23513712 2L 16400174..16400526 1859..1507 1765 100 Minus
2L 23513712 2L 16448314..16448446 133..1 665 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16404939..16405956 1150..133 5090 100 Minus
2L 23513712 2L 16404486..16404843 1506..1149 1790 100 Minus
2L 23513712 2L 16400174..16400526 1859..1507 1765 100 Minus
2L 23513712 2L 16448314..16448446 133..1 665 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:16:25 has no hits.

GH08155.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:17:30 Download gff for GH08155.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 16399008..16399359 1507..1858 99 <- Minus
chr2L 16403316..16403671 1151..1506 99 <- Minus
chr2L 16403771..16404783 136..1150 99 <- Minus
chr2L 16447140..16447272 1..135 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:16:55 Download gff for GH08155.complete
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 1..1368 165..1532 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:29:16 Download gff for GH08155.complete
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 1..1368 165..1532 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:59:08 Download gff for GH08155.complete
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 1..1368 165..1532 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:19:33 Download gff for GH08155.complete
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 1..1368 165..1532 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:38 Download gff for GH08155.complete
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 1..1368 165..1532 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:16:48 Download gff for GH08155.complete
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 20..1877 1..1858 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:29:16 Download gff for GH08155.complete
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 20..1877 1..1858 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:08 Download gff for GH08155.complete
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 24..1881 1..1858 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:19:33 Download gff for GH08155.complete
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 20..1877 1..1858 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:38 Download gff for GH08155.complete
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 24..1881 1..1858 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:30 Download gff for GH08155.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16400175..16400526 1507..1858 100 <- Minus
2L 16404486..16404841 1151..1506 100 <- Minus
2L 16404939..16405955 134..1150 100 <- Minus
2L 16448314..16448446 1..133 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:30 Download gff for GH08155.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16400175..16400526 1507..1858 100 <- Minus
2L 16404486..16404841 1151..1506 100 <- Minus
2L 16404939..16405955 134..1150 100 <- Minus
2L 16448314..16448446 1..133 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:30 Download gff for GH08155.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16400175..16400526 1507..1858 100 <- Minus
2L 16404486..16404841 1151..1506 100 <- Minus
2L 16404939..16405955 134..1150 100 <- Minus
2L 16448314..16448446 1..133 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:08 Download gff for GH08155.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16400175..16400526 1507..1858 100 <- Minus
arm_2L 16404486..16404841 1151..1506 100 <- Minus
arm_2L 16404939..16405955 134..1150 100 <- Minus
arm_2L 16448314..16448446 1..133 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:53:09 Download gff for GH08155.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16400175..16400526 1507..1858 100 <- Minus
2L 16404486..16404841 1151..1506 100 <- Minus
2L 16404939..16405955 134..1150 100 <- Minus
2L 16448314..16448446 1..133 100   Minus

GH08155.pep Sequence

Translation from 164 to 1531

> GH08155.pep
MWWLLLLLSLIAPSWQENATVINPSYVTKAGCEALVKEPNLCECQEQEIK
CENLQLHSDNLQLYGISCSIFDARGFGYIPPLKVGNIGSLIVQNCAIPNA
ESIKYLLSKLGVSNYTELEIFNYFDPKKTDRGEVLQQHYTDHESLKKVSI
IGFKSTLPENFLENLPALQQLSLKGSSDLPGNILHPLKNLTHLEIVVKNL
GKVSGAIFAKQSKLKHLMIDCDAKNSSVEMSAFGPQELWHMTELQSIELF
NCGDNVPTELFWMSEQLAYIGIRSNISYLSKDFLKVQKKLLTLRLERNNI
ARLPDQLFRNTPLILEIHLAFNNLDRIQSGLFDKLKNLQVLNLEHNPITT
IALNAFTPIPTAHIYVGKLFKAAKNADWARSTNATICEEEYIYGVCIYCK
RDEYLDHFADSENCNKPNPKAKDVLAKKAYENQLKAMPTHSWKKAKEYPV
EEEQP*

GH08155.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15883-PA 459 GF15883-PA 1..448 1..446 1999 82.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20127-PA 456 GG20127-PA 11..456 11..455 2278 95.3 Plus
Dere\GG11504-PA 1097 GG11504-PA 77..434 66..356 188 23.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH25030-PA 443 GH25030-PA 16..442 16..439 1446 62.7 Plus
Dgri\GH14238-PA 1111 GH14238-PA 78..414 66..359 155 22.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5888-PB 455 CG5888-PB 1..455 1..455 2396 100 Plus
CG5888-PA 455 CG5888-PA 1..455 1..455 2396 100 Plus
Tl-PD 1097 CG5490-PD 42..434 41..356 184 23.1 Plus
Tl-PB 1097 CG5490-PB 42..434 41..356 184 23.1 Plus
Tl-PC 1117 CG5490-PC 42..434 41..356 184 23.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13835-PA 450 GI13835-PA 8..447 1..437 1408 61.1 Plus
Dmoj\GI22147-PA 1104 GI22147-PA 11..412 4..359 170 22.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18481-PA 511 GL18481-PA 82..500 13..434 1605 72.1 Plus
Dper\GL27223-PA 350 GL27223-PA 78..319 66..312 186 25.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19205-PA 447 GA19205-PA 20..436 15..434 1605 72.2 Plus
Dpse\GA23316-PA 132 GA23316-PA 1..121 313..434 508 76.2 Plus
Dpse\Tl-PA 1100 GA18922-PA 78..435 66..357 254 25.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17176-PA 456 GM17176-PA 1..456 1..455 2397 99.3 Plus
Dsec\GM10345-PA 653 GM10345-PA 42..434 41..356 179 23.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21911-PA 456 GD21911-PA 1..456 1..455 2391 98.9 Plus
Dsim\Tl-PA 1096 GD21307-PA 42..434 41..356 177 23.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17454-PA 443 GJ17454-PA 1..440 1..437 1386 62.4 Plus
Dvir\Tl-PA 1114 GJ24265-PA 21..422 4..359 169 22.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24324-PA 465 GK24324-PA 35..460 16..444 1628 67.8 Plus
Dwil\GK13544-PA 1095 GK13544-PA 43..433 42..356 221 25.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12815-PA 456 GE12815-PA 1..456 1..455 2386 98.5 Plus
Dyak\Tl-PA 1099 GE23693-PA 77..435 66..357 189 23.6 Plus

GH08155.hyp Sequence

Translation from 164 to 1531

> GH08155.hyp
MWWLLLLLSLIAPSWQENATVINPSYVTKAGCEALVKEPNLCECQEQEIK
CENLQLHSDNLQLYGISCSIFDARGFGYIPPLKVGNIGSLIVQNCAIPNA
ESIKYLLSKLGVSNYTELEIFNYFDPKKTDRGEVLQQHYTDHESLKKVSI
IGFKSTLPENFLENLPALQQLSLKGSSDLPGNILHPLKNLTHLEIVVKNL
GKVSGAIFAKQSKLKHLMIDCDAKNSSVEMSAFGPQELWHMTELQSIELF
NCGDNVPTELFWMSEQLAYIGIRSNISYLSKDFLKVQKKLLTLRLERNNI
ARLPDQLFRNTPLILEIHLAFNNLDRIQSGLFDKLKNLQVLNLEHNPITT
IALNAFTPIPTAHIYVGKLFKAAKNADWARSTNATICEEEYIYGVCIYCK
RDEYLDHFADSENCNKPNPKAKDVLAKKAYENQLKAMPTHSWKKAKEYPV
EEEQP*

GH08155.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5888-PB 455 CG5888-PB 1..455 1..455 2396 100 Plus
CG5888-PA 455 CG5888-PA 1..455 1..455 2396 100 Plus
Tl-PD 1097 CG5490-PD 42..434 41..356 184 23.1 Plus
Tl-PB 1097 CG5490-PB 42..434 41..356 184 23.1 Plus
Tl-PC 1117 CG5490-PC 42..434 41..356 184 23.1 Plus