Clone GH08193 Report

Search the DGRC for GH08193

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:81
Well:93
Vector:pOT2
Associated Gene/TranscriptCG9377-RA
Protein status:GH08193.pep: gold
Preliminary Size:1199
Sequenced Size:1172

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9377 2001-01-01 Release 2 assignment
CG9377 2002-05-16 Blastp of sequenced clone
CG9377 2003-01-01 Sim4 clustering to Release 3
CG9377 2008-04-29 Release 5.5 accounting
CG9377 2008-08-15 Release 5.9 accounting
CG9377 2008-12-18 5.12 accounting

Clone Sequence Records

GH08193.complete Sequence

1172 bp (1172 high quality bases) assembled on 2002-05-16

GenBank Submission: AY119491

> GH08193.complete
AAGGCACCTGTTCAGGGACGGAATCGGAATCGGAATCCTCGGATATGTGC
TTCTATCGGATTGTGGTCATCTGTCTTCTAGGCTCCCTAGTGCCCTCCAT
AGCGGCATCCAAAGTCTGCGGACCGGAAAAGCATTGCGTTCCCTACGAGC
AGTGCAACGAGGGCTTAATGGTGGACGGAAAATTCTATCCGGATCGCAGC
AGAACGACTTTGGATGAGAATTGTCACTATATGGAAAAGTGCTGTAATAT
CCCCGATAAACTCCCGACTCCGAAAATTCCAGAGGAGATGATGAGCTGCC
CGTGTGGAGGACGCCATGATCTCTGGTACTACCTTCGACCGCTGGGATAT
AAACAGCAAGAGGCCAAGTTCGGGGAGTTTCCCTGGTTGGTGGCGGTCTA
CGGGTCGGATACTTATCTCTGCAGTGGAGCACTTATCACTCCGCTGGCGG
TGATCACCACCGCGCACTGCGTTCAGAATTCGGAAATGGAGAAGGTTCGT
CTGTTGGCCGGGGAATGGGATGCCGCCGTGGAGCTGGAGCCCCAGCCGCA
CCAGCAAAGATCGGTTGTTGAGACATTAGTGCATCCCAATTACACTCAAA
TGCCATTGGCCCACAACATAGCGATACTTCTGGTGGACAAGGAGAAACCT
TTCCAGCTGGCTCCTAATGTACAGCCCATTTGCTTGCCGCCTCCGCGAAT
AATGTACAACTACAGCCAGTGCTATGTGTCCGGTTGGCAGAGGAGTGATT
TTGGTAGAGCTGCAATCCTGCCCAAGCGTTGGACACTCTACGTCCTACCA
CCCGATCAATGCAGGACCAAGTTGCGATTGTCCCTCTTGGGGCGACGCCA
CGCCCACAACGATAGCCTGCTGTGTGCCGGCGGCGACAAGGGTGACTTCG
TCTGCGGTGATGTGGACATGACCGCTGTGCCGCTGATGTGTCCTCTTTCC
GGTCACGATGATCGTTTCCACCTGGCCGGTCTTTTGACCCGCACGGCTCG
CTGCGATGGCCCGCAACTTCTTGGAATTTACACAAACGTCAAGTTGTACC
GGCAGTGGATCGATTTGAAGCTAAGGGAACGCAATCTTGATATACGACAC
TACATGGTGTGAAACAATTATTGAGAAACTAATAAAACATTGAATCCATT
ATCAAAAAAAAAAAAAAAAAAA

GH08193.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9377-RA 1211 CG9377-RA 39..1194 1..1156 5780 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13358574..13359466 1153..261 4465 100 Minus
chr2L 23010047 chr2L 13359941..13360200 260..1 1300 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:37:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13359898..13360793 1156..261 4480 100 Minus
2L 23513712 2L 13361268..13361527 260..1 1300 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13359898..13360793 1156..261 4480 100 Minus
2L 23513712 2L 13361268..13361527 260..1 1300 100 Minus
Blast to na_te.dros performed on 2019-03-16 08:37:19 has no hits.

GH08193.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:38:21 Download gff for GH08193.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13358574..13359466 261..1153 100 <- Minus
chr2L 13359941..13360200 1..260 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:26:38 Download gff for GH08193.complete
Subject Subject Range Query Range Percent Splice Strand
CG9377-RA 1..1068 45..1112 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:50:23 Download gff for GH08193.complete
Subject Subject Range Query Range Percent Splice Strand
CG9377-RA 1..1068 45..1112 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:51:48 Download gff for GH08193.complete
Subject Subject Range Query Range Percent Splice Strand
CG9377-RA 1..1068 45..1112 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:42:58 Download gff for GH08193.complete
Subject Subject Range Query Range Percent Splice Strand
CG9377-RA 1..1068 45..1112 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:44:50 Download gff for GH08193.complete
Subject Subject Range Query Range Percent Splice Strand
CG9377-RA 1..1068 45..1112 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:27:43 Download gff for GH08193.complete
Subject Subject Range Query Range Percent Splice Strand
CG9377-RA 1..1153 1..1153 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:50:23 Download gff for GH08193.complete
Subject Subject Range Query Range Percent Splice Strand
CG9377-RA 1..1153 1..1153 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:48 Download gff for GH08193.complete
Subject Subject Range Query Range Percent Splice Strand
CG9377-RA 39..1191 1..1153 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:42:59 Download gff for GH08193.complete
Subject Subject Range Query Range Percent Splice Strand
CG9377-RA 1..1153 1..1153 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:44:50 Download gff for GH08193.complete
Subject Subject Range Query Range Percent Splice Strand
CG9377-RA 39..1191 1..1153 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:38:21 Download gff for GH08193.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13359901..13360793 261..1153 100 <- Minus
2L 13361268..13361527 1..260 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:38:21 Download gff for GH08193.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13359901..13360793 261..1153 100 <- Minus
2L 13361268..13361527 1..260 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:38:21 Download gff for GH08193.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13359901..13360793 261..1153 100 <- Minus
2L 13361268..13361527 1..260 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:48 Download gff for GH08193.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13359901..13360793 261..1153 100 <- Minus
arm_2L 13361268..13361527 1..260 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:15:19 Download gff for GH08193.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13359901..13360793 261..1153 100 <- Minus
2L 13361268..13361527 1..260 100   Minus

GH08193.hyp Sequence

Translation from 2 to 1111

> GH08193.hyp
GTCSGTESESESSDMCFYRIVVICLLGSLVPSIAASKVCGPEKHCVPYEQ
CNEGLMVDGKFYPDRSRTTLDENCHYMEKCCNIPDKLPTPKIPEEMMSCP
CGGRHDLWYYLRPLGYKQQEAKFGEFPWLVAVYGSDTYLCSGALITPLAV
ITTAHCVQNSEMEKVRLLAGEWDAAVELEPQPHQQRSVVETLVHPNYTQM
PLAHNIAILLVDKEKPFQLAPNVQPICLPPPRIMYNYSQCYVSGWQRSDF
GRAAILPKRWTLYVLPPDQCRTKLRLSLLGRRHAHNDSLLCAGGDKGDFV
CGDVDMTAVPLMCPLSGHDDRFHLAGLLTRTARCDGPQLLGIYTNVKLYR
QWIDLKLRERNLDIRHYMV*

GH08193.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9377-PA 355 CG9377-PA 1..355 15..369 1958 100 Plus
CG5390-PB 406 CG5390-PB 71..404 39..367 543 35.6 Plus
CG5390-PA 406 CG5390-PA 71..404 39..367 543 35.6 Plus
CG8738-PA 459 CG8738-PA 117..445 37..354 477 33.8 Plus
CG8586-PC 444 CG8586-PC 105..435 39..358 440 31.5 Plus

GH08193.pep Sequence

Translation from 44 to 1111

> GH08193.pep
MCFYRIVVICLLGSLVPSIAASKVCGPEKHCVPYEQCNEGLMVDGKFYPD
RSRTTLDENCHYMEKCCNIPDKLPTPKIPEEMMSCPCGGRHDLWYYLRPL
GYKQQEAKFGEFPWLVAVYGSDTYLCSGALITPLAVITTAHCVQNSEMEK
VRLLAGEWDAAVELEPQPHQQRSVVETLVHPNYTQMPLAHNIAILLVDKE
KPFQLAPNVQPICLPPPRIMYNYSQCYVSGWQRSDFGRAAILPKRWTLYV
LPPDQCRTKLRLSLLGRRHAHNDSLLCAGGDKGDFVCGDVDMTAVPLMCP
LSGHDDRFHLAGLLTRTARCDGPQLLGIYTNVKLYRQWIDLKLRERNLDI
RHYMV*

GH08193.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21671-PA 351 GF21671-PA 6..351 6..355 1345 70 Plus
Dana\GF12376-PA 457 GF12376-PA 119..454 23..348 512 34.6 Plus
Dana\GF14116-PA 400 GF14116-PA 64..397 20..343 473 33.5 Plus
Dana\GF12570-PA 448 GF12570-PA 106..446 22..351 421 30.1 Plus
Dana\GF13730-PA 383 GF13730-PA 1..334 8..340 357 33.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10209-PA 362 GG10209-PA 8..362 1..355 1768 91.3 Plus
Dere\GG23951-PA 413 GG23951-PA 73..411 20..353 544 35.1 Plus
Dere\GG23377-PA 447 GG23377-PA 105..436 23..343 484 34.1 Plus
Dere\GG10625-PA 437 GG10625-PA 95..428 22..344 442 31.1 Plus
Dere\GG15993-PA 1188 GG15993-PA 891..1180 47..339 348 28.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13457-PA 362 GH13457-PA 10..362 8..355 1197 63.4 Plus
Dgri\GH25107-PA 362 GH25107-PA 10..362 8..355 1197 63.4 Plus
Dgri\GH10384-PA 371 GH10384-PA 8..365 3..355 512 31.8 Plus
Dgri\GH13850-PA 400 GH13850-PA 64..398 25..353 510 33.2 Plus
Dgri\GH20539-PA 450 GH20539-PA 103..440 16..342 450 32.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9377-PA 355 CG9377-PA 1..355 1..355 1958 100 Plus
CG5390-PB 406 CG5390-PB 71..404 25..353 543 35.6 Plus
CG5390-PA 406 CG5390-PA 71..404 25..353 543 35.6 Plus
CG8738-PA 459 CG8738-PA 117..445 23..340 477 33.8 Plus
CG8586-PC 444 CG8586-PC 105..435 25..344 440 31.5 Plus
CG8586-PB 444 CG8586-PB 105..435 25..344 440 31.5 Plus
CG8586-PA 444 CG8586-PA 105..435 25..344 440 31.5 Plus
CG40160-PH 421 CG40160-PH 81..409 30..343 379 32.2 Plus
CG40160-PG 421 CG40160-PG 81..409 30..343 379 32.2 Plus
CG40160-PF 421 CG40160-PF 81..409 30..343 379 32.2 Plus
CG40160-PE 421 CG40160-PE 81..409 30..343 379 32.2 Plus
CG40160-PD 421 CG40160-PD 81..409 30..343 379 32.2 Plus
CG40160-PA 421 CG40160-PA 81..409 30..343 379 32.2 Plus
CG4998-PA 891 CG4998-PA 600..883 56..339 360 28.8 Plus
CG4998-PB 1185 CG4998-PB 894..1177 56..339 360 28.8 Plus
CG31827-PA 294 CG31827-PA 49..286 106..345 329 31.6 Plus
CG18478-PA 294 CG18478-PA 49..286 106..345 329 31.6 Plus
CG18557-PA 343 CG18557-PA 22..326 25..345 329 26.5 Plus
CG3117-PB 347 CG3117-PB 8..334 8..345 327 27.8 Plus
CG14990-PA 322 CG14990-PA 70..297 110..339 313 31.3 Plus
SPH93-PA 494 CG6639-PA 246..486 101..343 292 30.9 Plus
CG4793-PD 910 CG4793-PD 27..336 29..340 290 29.2 Plus
CG31780-PB 464 CG31780-PB 33..346 25..341 288 27.7 Plus
CG18477-PA 464 CG18477-PA 33..346 25..341 288 27.7 Plus
CG13318-PA 405 CG13318-PA 168..403 106..343 282 31.1 Plus
Sb-PB 787 CG4316-PB 548..782 105..339 281 31.6 Plus
Sb-PA 787 CG4316-PA 548..782 105..339 281 31.6 Plus
CG8172-PD 371 CG8172-PD 134..370 109..347 275 30 Plus
CG8172-PE 545 CG8172-PE 308..544 109..347 275 30 Plus
CG8172-PF 561 CG8172-PF 324..560 109..347 275 30 Plus
CG18563-PB 379 CG18563-PB 143..371 110..339 238 30.5 Plus
Ser7-PA 397 CG2045-PA 142..397 111..348 237 25.3 Plus
Np-PB 1041 CG34350-PB 804..1036 107..340 235 28.9 Plus
Np-PA 1041 CG34350-PA 804..1036 107..340 235 28.9 Plus
lint-PC 1693 CG8213-PC 1424..1686 73..339 227 29.2 Plus
CG9294-PB 352 CG9294-PB 83..334 78..339 220 26.4 Plus
CG4613-PC 374 CG4613-PC 142..368 106..345 217 26.9 Plus
CG4613-PB 374 CG4613-PB 142..368 106..345 217 26.9 Plus
lint-PB 1674 CG8213-PB 1438..1667 109..339 216 29 Plus
scaf-PA 655 CG11066-PA 393..552 65..231 214 32 Plus
scaf-PB 655 CG11066-PB 393..552 65..231 214 32 Plus
Corin-PC 1397 CG2105-PC 1109..1355 106..351 210 25.7 Plus
Corin-PB 1397 CG2105-PB 1109..1355 106..351 210 25.7 Plus
CG16998-PA 258 CG16998-PA 37..242 113..339 207 29.6 Plus
SPE-PA 400 CG16705-PA 93..398 66..343 204 28.2 Plus
CG8172-PG 192 CG8172-PG 2..191 150..347 203 28.7 Plus
CG11836-PI 281 CG11836-PI 34..274 85..343 202 26.1 Plus
CG11836-PJ 333 CG11836-PJ 86..326 85..343 202 26.1 Plus
CG18735-PA 364 CG18735-PA 55..317 76..345 202 27.3 Plus
grass-PA 335 CG5896-PA 82..326 106..339 199 25.8 Plus
grass-PB 377 CG5896-PB 124..368 106..339 199 25.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17212-PA 356 GI17212-PA 4..356 7..355 1129 62.3 Plus
Dmoj\GI19467-PA 398 GI19467-PA 66..396 25..353 543 35.7 Plus
Dmoj\GI18807-PA 438 GI18807-PA 97..435 23..350 440 32.6 Plus
Dmoj\GI20774-PA 454 GI20774-PA 112..449 23..349 419 31.3 Plus
Dmoj\GI24370-PA 420 GI24370-PA 51..420 3..355 398 29.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25716-PA 356 GL25716-PA 6..356 6..355 1396 73.8 Plus
Dper\GL18967-PA 402 GL18967-PA 66..400 25..353 531 33.8 Plus
Dper\GL17115-PA 454 GL17115-PA 112..440 23..340 466 32.9 Plus
Dper\GL15454-PA 525 GL15454-PA 11..357 15..353 460 31.9 Plus
Dper\GL17367-PA 465 GL17367-PA 122..462 21..350 449 31.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21742-PA 356 GA21742-PA 6..356 6..355 1403 74.1 Plus
Dpse\GA21292-PA 462 GA21292-PA 120..448 23..340 466 32.9 Plus
Dpse\GA29036-PA 484 GA29036-PA 23..357 23..353 456 32.7 Plus
Dpse\GA21182-PA 465 GA21182-PA 122..462 21..350 447 31.3 Plus
Dpse\GA29037-PA 335 GA29037-PA 26..334 25..346 360 28.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25631-PA 349 GM25631-PA 4..349 10..355 1771 94.5 Plus
Dsec\GM11791-PA 405 GM11791-PA 65..404 20..354 546 34.6 Plus
Dsec\GM21057-PA 459 GM21057-PA 117..448 23..343 467 33.2 Plus
Dsec\GM20670-PA 444 GM20670-PA 102..435 22..344 424 30.8 Plus
Dsec\GM18188-PA 346 GM18188-PA 4..333 3..345 390 29.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22069-PA 414 GD22069-PA 60..414 1..355 1818 93.8 Plus
Dsim\GD22278-PA 405 GD22278-PA 65..403 20..353 541 34.6 Plus
Dsim\GD10592-PA 459 GD10592-PA 117..448 23..343 474 33.5 Plus
Dsim\GD10144-PA 444 GD10144-PA 102..435 22..344 430 31.4 Plus
Dsim\GD10182-PA 326 GD10182-PA 68..315 97..350 384 33.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18265-PA 361 GJ18265-PA 23..361 20..355 1161 63.6 Plus
Dvir\GJ21928-PA 395 GJ21928-PA 59..393 25..353 550 35 Plus
Dvir\GJ21834-PA 442 GJ21834-PA 105..441 23..348 492 33.9 Plus
Dvir\GJ18039-PA 571 GJ18039-PA 237..569 22..353 447 32.9 Plus
Dvir\GJ20509-PA 449 GJ20509-PA 113..446 25..350 431 30.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21569-PA 454 GK21569-PA 115..451 25..350 449 31.7 Plus
Dwil\GK21734-PA 470 GK21734-PA 120..465 23..348 449 31.3 Plus
Dwil\GK12466-PA 426 GK12466-PA 61..306 23..261 387 34.5 Plus
Dwil\GK24265-PA 294 GK24265-PA 18..294 95..355 355 29.8 Plus
Dwil\GK11266-PA 405 GK11266-PA 117..405 41..345 312 29.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11699-PA 355 GE11699-PA 1..355 1..355 1751 90.4 Plus
Dyak\GE26141-PA 423 GE26141-PA 83..421 20..353 539 34.4 Plus
Dyak\GE19219-PA 459 GE19219-PA 117..448 23..343 492 34.4 Plus
Dyak\GE22829-PA 444 GE22829-PA 102..435 22..344 429 31 Plus
Dyak\GE25934-PA 402 GE25934-PA 58..402 16..355 386 33 Plus