BDGP Sequence Production Resources |
Search the DGRC for GH08220
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 82 |
Well: | 20 |
Vector: | pOT2 |
Associated Gene/Transcript | CG42271-RB |
Protein status: | GH08220.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 1353 |
Gene | Date | Evidence |
---|---|---|
CG1846 | 2001-01-01 | Release 2 assignment |
CG33248 | 2002-06-12 | Blastp of sequenced clone |
CG1846 | 2003-01-01 | Sim4 clustering to Release 3 |
CG33248 | 2008-04-29 | Release 5.5 accounting |
CG42271 | 2008-08-15 | Release 5.9 accounting |
CG42271 | 2008-12-18 | 5.12 accounting |
1353 bp (1353 high quality bases) assembled on 2002-06-12
GenBank Submission: AY122099
> GH08220.complete CAGAAACAGTAGCGCAGTGCGCTTATCAAAATTAGCTGTTAAATTCAATT AGTTGCTTGTATTAATTGCAATCGTGGGCAAGGGGATTCACTCGGAGCGA CGGATGACCCAGCTCCTGGCCAGGAGTAGCCCGATTGTGAGTGCCAGCGG AGTGCGGGGCGTTTGGCAGCCAGCTGTGCAGCAGCAGCAGCAACAACAAC AATAACAACAAAGTAACGAGGTCGCAGGACCAAAAAAAATAAAGGTGGAG AAGGAGGAGAGGGGGAGGAGCAGAAGATCCAGCGATAAGCAGCCATGCGC TTTAACAAGCCGGAACTGAACTCCCTGGCCAGCAATCCAGCAACGCGATT CGACAAGGAGGGCCTGCTCATCATCACCGATCGCCAGGAGGGCTTCCTGT GGCGCTCTAGCGAAGTCAGAGTTGAACGTTGGTGTAAACTGCGTGGAAAT TTACTGTTCTACCTCAAGGATAAGGACCCCAAGTCAGCGGTGGCCGGCCT CCTGGTGCTGGAGAACTGTCGTGCGCGCATTCAGAATGAGGAGCGTGATT CCGAGGGCTACGTATTCGATTTAGACTTCAAGGACAGCCCATCGGAACGT TTCATTACACGTTCGTCGGCCGAACGCCTGGCCTGGGTGCAGTGCATCGA GCACGCATCCAGCGAGAAGCTAAACGCGCTCATACGCCAGCTAAAGGAAC AGATTGTTAGCCAGAGCCGCCAGCCCAGCAGCGGGGCGTCATCCTCCATG GGCAATCACATTGACCTCGGCATGCCGCTGGAGCAGCAAATGCAGGAGCA GCTACAGCTGCACGGCCAGCCGGCGGAGGAGTTGTCCGTGCCCGTGCCCA CGGAGGTGGTGGCGCCGTTTGAAGGTGATCTTATACAGTTCTAACCCAAA AAACCAAATAAGAAAATCCAAAATGAAACGCAAACAATCGGAAAACGCGC GGCGGTCGTTGTTGTTTTTTTAGTTTTGTTAACCAAATATTTGGCCATGT CACTGTTCCACCCACTGCACCACATACCTCTCGCTCACTTCCATGCAACC ACATCCGGTTTGAGTTCATTCGATTCCAACGCGTCCAACCAAAGACGTTT CAATCGCAAACATTCGGCTATCGAACTAATATTTCATTTTTCGTTTGTTG CATCGGTTGCATCCAATCGAAATCGATTGAACGCACTAAACCCATGATTT CCATTACTCCATTTTCGAATTTATATGTTGTAAACTTATGTGTAATCCCA TCGGGAGCTGGTGTTGCATTGCGTTCCATGTGATTATGAATTTATTCTTG GAATAAACTTTGTTTTGCTAATGAATTTAAACGAAAAAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 14122814..14123574 | 1333..573 | 3775 | 99.7 | Minus |
chrX | 22417052 | chrX | 14124304..14124579 | 276..1 | 1380 | 100 | Minus |
chrX | 22417052 | chrX | 14123637..14123797 | 574..414 | 805 | 100 | Minus |
chrX | 22417052 | chrX | 14123953..14124093 | 415..275 | 705 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 14232279..14233042 | 1336..573 | 3820 | 100 | Minus |
X | 23542271 | X | 14233772..14234047 | 276..1 | 1380 | 100 | Minus |
X | 23542271 | X | 14233105..14233265 | 574..414 | 805 | 100 | Minus |
X | 23542271 | X | 14233421..14233561 | 415..275 | 705 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 14240377..14241140 | 1336..573 | 3820 | 100 | Minus |
X | 23527363 | X | 14241870..14242145 | 276..1 | 1380 | 100 | Minus |
X | 23527363 | X | 14241203..14241363 | 574..414 | 805 | 100 | Minus |
X | 23527363 | X | 14241519..14241659 | 415..275 | 705 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6893 | 166..344 | 159 | 61.3 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3289..3323 | 177..211 | 139 | 88.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1132..1170 | 178..216 | 132 | 82.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2410 | 171..210 | 130 | 82.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6867 | 171..241 | 129 | 69.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6878 | 167..293 | 127 | 59.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2435 | 179..214 | 126 | 83.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2474 | 179..242 | 126 | 69.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2633..2666 | 178..211 | 125 | 85.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2499..2530 | 179..210 | 124 | 87.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2663 | 180..211 | 124 | 87.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2388 | 178..217 | 121 | 80.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6810 | 167..210 | 121 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1544..1594 | 166..216 | 120 | 70.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2436 | 179..209 | 119 | 87.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1096..1150 | 166..219 | 119 | 75.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2519 | 179..242 | 117 | 68.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6783 | 166..210 | 117 | 73.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1541..1585 | 166..210 | 117 | 73.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1063..1128 | 178..241 | 117 | 68.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1120..1155 | 178..213 | 117 | 80.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2350 | 179..210 | 115 | 84.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2356 | 179..210 | 115 | 84.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6829 | 183..295 | 115 | 61.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2435..2482 | 163..210 | 114 | 70.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6872..6901 | 179..208 | 114 | 86.7 | Plus |
BS | 5142 | BS BS 5142bp | 2041..2107 | 178..242 | 114 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6781..6826 | 166..211 | 113 | 71.7 | Plus |
BS | 5142 | BS BS 5142bp | 2088..2124 | 177..213 | 113 | 78.4 | Plus |
TART-A | 13424 | TART-A 13424bp | 12867..12934 | 133..202 | 111 | 64.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 14123953..14124091 | 277..415 | 100 | <- | Minus |
chrX | 14122814..14123572 | 575..1333 | 99 | <- | Minus |
chrX | 14123637..14123795 | 416..574 | 100 | <- | Minus |
chrX | 14124304..14124579 | 1..276 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42271-RB | 1..600 | 295..894 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42271-RB | 1..600 | 295..894 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42271-RB | 1..600 | 295..894 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42271-RB | 1..600 | 295..894 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42271-RB | 6..1338 | 1..1333 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42271-RB | 6..1338 | 1..1333 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42271-RB | 20..1352 | 1..1333 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42271-RB | 6..1338 | 1..1333 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42271-RB | 20..1352 | 1..1333 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 14232282..14233040 | 575..1333 | 100 | <- | Minus |
X | 14233105..14233263 | 416..574 | 100 | <- | Minus |
X | 14233421..14233559 | 277..415 | 100 | <- | Minus |
X | 14233772..14234047 | 1..276 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 14232282..14233040 | 575..1333 | 100 | <- | Minus |
X | 14233105..14233263 | 416..574 | 100 | <- | Minus |
X | 14233421..14233559 | 277..415 | 100 | <- | Minus |
X | 14233772..14234047 | 1..276 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 14232282..14233040 | 575..1333 | 100 | <- | Minus |
X | 14233105..14233263 | 416..574 | 100 | <- | Minus |
X | 14233421..14233559 | 277..415 | 100 | <- | Minus |
X | 14233772..14234047 | 1..276 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 14126315..14127073 | 575..1333 | 100 | <- | Minus |
arm_X | 14127138..14127296 | 416..574 | 100 | <- | Minus |
arm_X | 14127454..14127592 | 277..415 | 100 | <- | Minus |
arm_X | 14127805..14128080 | 1..276 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 14241519..14241657 | 277..415 | 100 | <- | Minus |
X | 14241870..14242145 | 1..276 | 100 | Minus | |
X | 14240380..14241138 | 575..1333 | 100 | <- | Minus |
X | 14241203..14241361 | 416..574 | 100 | <- | Minus |
Translation from 294 to 893
> GH08220.pep MRFNKPELNSLASNPATRFDKEGLLIITDRQEGFLWRSSEVRVERWCKLR GNLLFYLKDKDPKSAVAGLLVLENCRARIQNEERDSEGYVFDLDFKDSPS ERFITRSSAERLAWVQCIEHASSEKLNALIRQLKEQIVSQSRQPSSGASS SMGNHIDLGMPLEQQMQEQLQLHGQPAEELSVPVPTEVVAPFEGDLIQF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15989-PA | 192 | GF15989-PA | 1..192 | 1..199 | 680 | 68.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19465-PA | 200 | GG19465-PA | 1..200 | 1..199 | 954 | 92 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12404-PA | 189 | GH12404-PA | 1..189 | 1..199 | 524 | 55.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42271-PB | 199 | CG33248-PA | 1..199 | 1..199 | 1020 | 100 | Plus |
CG42271-PC | 1280 | CG42271-PC | 1..193 | 1..193 | 989 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15855-PA | 189 | GI15855-PA | 1..189 | 1..199 | 544 | 56.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13002-PA | 190 | GL13002-PA | 1..190 | 1..199 | 665 | 67.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25793-PA | 190 | GA25793-PA | 1..190 | 1..199 | 684 | 69 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17563-PA | 200 | GM17563-PA | 1..200 | 1..199 | 857 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15856-PA | 698 | GD15856-PA | 506..698 | 8..199 | 805 | 88.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19017-PA | 199 | GJ19017-PA | 1..199 | 1..199 | 547 | 54.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25175-PA | 193 | GK25175-PA | 1..193 | 1..199 | 673 | 68.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16120-PA | 202 | GE16120-PA | 1..202 | 1..199 | 910 | 91.6 | Plus |
Translation from 294 to 893
> GH08220.hyp MRFNKPELNSLASNPATRFDKEGLLIITDRQEGFLWRSSEVRVERWCKLR GNLLFYLKDKDPKSAVAGLLVLENCRARIQNEERDSEGYVFDLDFKDSPS ERFITRSSAERLAWVQCIEHASSEKLNALIRQLKEQIVSQSRQPSSGASS SMGNHIDLGMPLEQQMQEQLQLHGQPAEELSVPVPTEVVAPFEGDLIQF*