Clone GH08220 Report

Search the DGRC for GH08220

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:82
Well:20
Vector:pOT2
Associated Gene/TranscriptCG42271-RB
Protein status:GH08220.pep: gold
Preliminary Size:1300
Sequenced Size:1353

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1846 2001-01-01 Release 2 assignment
CG33248 2002-06-12 Blastp of sequenced clone
CG1846 2003-01-01 Sim4 clustering to Release 3
CG33248 2008-04-29 Release 5.5 accounting
CG42271 2008-08-15 Release 5.9 accounting
CG42271 2008-12-18 5.12 accounting

Clone Sequence Records

GH08220.complete Sequence

1353 bp (1353 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122099

> GH08220.complete
CAGAAACAGTAGCGCAGTGCGCTTATCAAAATTAGCTGTTAAATTCAATT
AGTTGCTTGTATTAATTGCAATCGTGGGCAAGGGGATTCACTCGGAGCGA
CGGATGACCCAGCTCCTGGCCAGGAGTAGCCCGATTGTGAGTGCCAGCGG
AGTGCGGGGCGTTTGGCAGCCAGCTGTGCAGCAGCAGCAGCAACAACAAC
AATAACAACAAAGTAACGAGGTCGCAGGACCAAAAAAAATAAAGGTGGAG
AAGGAGGAGAGGGGGAGGAGCAGAAGATCCAGCGATAAGCAGCCATGCGC
TTTAACAAGCCGGAACTGAACTCCCTGGCCAGCAATCCAGCAACGCGATT
CGACAAGGAGGGCCTGCTCATCATCACCGATCGCCAGGAGGGCTTCCTGT
GGCGCTCTAGCGAAGTCAGAGTTGAACGTTGGTGTAAACTGCGTGGAAAT
TTACTGTTCTACCTCAAGGATAAGGACCCCAAGTCAGCGGTGGCCGGCCT
CCTGGTGCTGGAGAACTGTCGTGCGCGCATTCAGAATGAGGAGCGTGATT
CCGAGGGCTACGTATTCGATTTAGACTTCAAGGACAGCCCATCGGAACGT
TTCATTACACGTTCGTCGGCCGAACGCCTGGCCTGGGTGCAGTGCATCGA
GCACGCATCCAGCGAGAAGCTAAACGCGCTCATACGCCAGCTAAAGGAAC
AGATTGTTAGCCAGAGCCGCCAGCCCAGCAGCGGGGCGTCATCCTCCATG
GGCAATCACATTGACCTCGGCATGCCGCTGGAGCAGCAAATGCAGGAGCA
GCTACAGCTGCACGGCCAGCCGGCGGAGGAGTTGTCCGTGCCCGTGCCCA
CGGAGGTGGTGGCGCCGTTTGAAGGTGATCTTATACAGTTCTAACCCAAA
AAACCAAATAAGAAAATCCAAAATGAAACGCAAACAATCGGAAAACGCGC
GGCGGTCGTTGTTGTTTTTTTAGTTTTGTTAACCAAATATTTGGCCATGT
CACTGTTCCACCCACTGCACCACATACCTCTCGCTCACTTCCATGCAACC
ACATCCGGTTTGAGTTCATTCGATTCCAACGCGTCCAACCAAAGACGTTT
CAATCGCAAACATTCGGCTATCGAACTAATATTTCATTTTTCGTTTGTTG
CATCGGTTGCATCCAATCGAAATCGATTGAACGCACTAAACCCATGATTT
CCATTACTCCATTTTCGAATTTATATGTTGTAAACTTATGTGTAATCCCA
TCGGGAGCTGGTGTTGCATTGCGTTCCATGTGATTATGAATTTATTCTTG
GAATAAACTTTGTTTTGCTAATGAATTTAAACGAAAAAAAAAAAAAAAAA
AAA

GH08220.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG42271-RB 1400 CG42271-RB 49..1384 1..1336 6680 100 Plus
CG42271-RC 4601 CG42271-RC 49..922 1..874 4370 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 14122814..14123574 1333..573 3775 99.7 Minus
chrX 22417052 chrX 14124304..14124579 276..1 1380 100 Minus
chrX 22417052 chrX 14123637..14123797 574..414 805 100 Minus
chrX 22417052 chrX 14123953..14124093 415..275 705 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:37:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14232279..14233042 1336..573 3820 100 Minus
X 23542271 X 14233772..14234047 276..1 1380 100 Minus
X 23542271 X 14233105..14233265 574..414 805 100 Minus
X 23542271 X 14233421..14233561 415..275 705 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 14240377..14241140 1336..573 3820 100 Minus
X 23527363 X 14241870..14242145 276..1 1380 100 Minus
X 23527363 X 14241203..14241363 574..414 805 100 Minus
X 23527363 X 14241519..14241659 415..275 705 100 Minus
Blast to na_te.dros performed 2019-03-16 18:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6893 166..344 159 61.3 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3289..3323 177..211 139 88.6 Plus
roo 9092 roo DM_ROO 9092bp 1132..1170 178..216 132 82.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2370..2410 171..210 130 82.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6867 171..241 129 69.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6878 167..293 127 59.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2400..2435 179..214 126 83.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2474 179..242 126 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2633..2666 178..211 125 85.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2499..2530 179..210 124 87.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2632..2663 180..211 124 87.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2388 178..217 121 80.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6810 167..210 121 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1544..1594 166..216 120 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2406..2436 179..209 119 87.1 Plus
roo 9092 roo DM_ROO 9092bp 1096..1150 166..219 119 75.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2454..2519 179..242 117 68.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6739..6783 166..210 117 73.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1541..1585 166..210 117 73.3 Plus
roo 9092 roo DM_ROO 9092bp 1063..1128 178..241 117 68.2 Plus
roo 9092 roo DM_ROO 9092bp 1120..1155 178..213 117 80.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2350 179..210 115 84.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2356 179..210 115 84.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6829 183..295 115 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2435..2482 163..210 114 70.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6872..6901 179..208 114 86.7 Plus
BS 5142 BS BS 5142bp 2041..2107 178..242 114 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6781..6826 166..211 113 71.7 Plus
BS 5142 BS BS 5142bp 2088..2124 177..213 113 78.4 Plus
TART-A 13424 TART-A 13424bp 12867..12934 133..202 111 64.3 Plus

GH08220.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:02:58 Download gff for GH08220.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 14123953..14124091 277..415 100 <- Minus
chrX 14122814..14123572 575..1333 99 <- Minus
chrX 14123637..14123795 416..574 100 <- Minus
chrX 14124304..14124579 1..276 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:26:41 Download gff for GH08220.complete
Subject Subject Range Query Range Percent Splice Strand
CG42271-RB 1..600 295..894 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:23:43 Download gff for GH08220.complete
Subject Subject Range Query Range Percent Splice Strand
CG42271-RB 1..600 295..894 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:07:46 Download gff for GH08220.complete
Subject Subject Range Query Range Percent Splice Strand
CG42271-RB 1..600 295..894 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 18:14:23 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:27:59 Download gff for GH08220.complete
Subject Subject Range Query Range Percent Splice Strand
CG42271-RB 1..600 295..894 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:50:55 Download gff for GH08220.complete
Subject Subject Range Query Range Percent Splice Strand
CG42271-RB 6..1338 1..1333 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:23:43 Download gff for GH08220.complete
Subject Subject Range Query Range Percent Splice Strand
CG42271-RB 6..1338 1..1333 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:07:46 Download gff for GH08220.complete
Subject Subject Range Query Range Percent Splice Strand
CG42271-RB 20..1352 1..1333 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:14:23 Download gff for GH08220.complete
Subject Subject Range Query Range Percent Splice Strand
CG42271-RB 6..1338 1..1333 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:27:59 Download gff for GH08220.complete
Subject Subject Range Query Range Percent Splice Strand
CG42271-RB 20..1352 1..1333 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:02:58 Download gff for GH08220.complete
Subject Subject Range Query Range Percent Splice Strand
X 14232282..14233040 575..1333 100 <- Minus
X 14233105..14233263 416..574 100 <- Minus
X 14233421..14233559 277..415 100 <- Minus
X 14233772..14234047 1..276 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:02:58 Download gff for GH08220.complete
Subject Subject Range Query Range Percent Splice Strand
X 14232282..14233040 575..1333 100 <- Minus
X 14233105..14233263 416..574 100 <- Minus
X 14233421..14233559 277..415 100 <- Minus
X 14233772..14234047 1..276 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:02:58 Download gff for GH08220.complete
Subject Subject Range Query Range Percent Splice Strand
X 14232282..14233040 575..1333 100 <- Minus
X 14233105..14233263 416..574 100 <- Minus
X 14233421..14233559 277..415 100 <- Minus
X 14233772..14234047 1..276 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:07:46 Download gff for GH08220.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14126315..14127073 575..1333 100 <- Minus
arm_X 14127138..14127296 416..574 100 <- Minus
arm_X 14127454..14127592 277..415 100 <- Minus
arm_X 14127805..14128080 1..276 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:47:20 Download gff for GH08220.complete
Subject Subject Range Query Range Percent Splice Strand
X 14241519..14241657 277..415 100 <- Minus
X 14241870..14242145 1..276 100   Minus
X 14240380..14241138 575..1333 100 <- Minus
X 14241203..14241361 416..574 100 <- Minus

GH08220.pep Sequence

Translation from 294 to 893

> GH08220.pep
MRFNKPELNSLASNPATRFDKEGLLIITDRQEGFLWRSSEVRVERWCKLR
GNLLFYLKDKDPKSAVAGLLVLENCRARIQNEERDSEGYVFDLDFKDSPS
ERFITRSSAERLAWVQCIEHASSEKLNALIRQLKEQIVSQSRQPSSGASS
SMGNHIDLGMPLEQQMQEQLQLHGQPAEELSVPVPTEVVAPFEGDLIQF*

GH08220.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15989-PA 192 GF15989-PA 1..192 1..199 680 68.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19465-PA 200 GG19465-PA 1..200 1..199 954 92 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12404-PA 189 GH12404-PA 1..189 1..199 524 55.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG42271-PB 199 CG33248-PA 1..199 1..199 1020 100 Plus
CG42271-PC 1280 CG42271-PC 1..193 1..193 989 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15855-PA 189 GI15855-PA 1..189 1..199 544 56.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13002-PA 190 GL13002-PA 1..190 1..199 665 67.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25793-PA 190 GA25793-PA 1..190 1..199 684 69 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17563-PA 200 GM17563-PA 1..200 1..199 857 93 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15856-PA 698 GD15856-PA 506..698 8..199 805 88.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19017-PA 199 GJ19017-PA 1..199 1..199 547 54.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25175-PA 193 GK25175-PA 1..193 1..199 673 68.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16120-PA 202 GE16120-PA 1..202 1..199 910 91.6 Plus

GH08220.hyp Sequence

Translation from 294 to 893

> GH08220.hyp
MRFNKPELNSLASNPATRFDKEGLLIITDRQEGFLWRSSEVRVERWCKLR
GNLLFYLKDKDPKSAVAGLLVLENCRARIQNEERDSEGYVFDLDFKDSPS
ERFITRSSAERLAWVQCIEHASSEKLNALIRQLKEQIVSQSRQPSSGASS
SMGNHIDLGMPLEQQMQEQLQLHGQPAEELSVPVPTEVVAPFEGDLIQF*

GH08220.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG42271-PB 199 CG33248-PA 1..199 1..199 1020 100 Plus
CG42271-PC 1280 CG42271-PC 1..193 1..193 989 100 Plus