Clone GH08349 Report

Search the DGRC for GH08349

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:83
Well:49
Vector:pOT2
Associated Gene/TranscriptSac1-RA
Protein status:GH08349.pep: gold
Preliminary Size:2200
Sequenced Size:2385

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9128 2001-01-01 Release 2 assignment
CG9128 2001-07-04 Blastp of sequenced clone
CG9128 2003-01-01 Sim4 clustering to Release 3
Sac1 2008-04-29 Release 5.5 accounting
Sac1 2008-08-15 Release 5.9 accounting
Sac1 2008-12-18 5.12 accounting

Clone Sequence Records

GH08349.complete Sequence

2385 bp (2385 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047571

> GH08349.complete
TCCATCCCTATCACACACGTAGTGGCAAAGAGTTGGCCCAAAAATCAGAT
GAACTGCAATTTGTGTGTTAAATCAATAAAGAACGAGTAACCTCCTGATT
GTGTGGCTGATTTTGGTGCTGTGCGTGTGTGACAGCGGTGATAGCGACAG
TGAATCCCCGATTACAGGAATCTTCGAAGTGGGCCAGCCACCGCCCCCGG
AAATCATGGACAGCAGGGAGGAGAACGCCGTGTACGATGACATGAACCTG
TACATCGCACCGCAGAGCTTCATCATCGAGCCGAATGGAGGAGATGAGTT
GCTGGTCATCGGGCGCCACGACAAAGTCACCAGGGTTCAGCCAGCGAGCG
GAGGTCTTGTGGCCAACCTTCGCCCCACCAGGAGGATTTGTGGTGTGCTG
GGAACCATTCACCTACTGAGCTGCGACTACCTTCTGGTGGCGACCCACCG
CCTCTTCGTGGGCGTGCTCAATGGCGCAGTTGTGTGGAGATTAGCGGGCT
ATGACATCATACCTTACATTCCGAATTCCTTCCAGCGCAAGGAGAACGAA
AACTACTTGCGACTGCTACGCCAGACACTTGACACCAAGTTCTTTTACTT
CTCCTACCGCTACGACCTTACCAATTCGCTGCAGCGACAGCGGGAGGTGG
CACAATCGCGGCCTGAAGTATCCGGGTTGCTCCAGCGCGCTGAGCAGCGA
TTCGTTTGGAATGGCTATGTGCTGCGGCAGTTCAACTGCGATAAGATGGA
GAAGTTCCAGCTGCCACTCGTCCTGGGCTTCGTGTCTATCAACCAGGTGC
AGATCAACGGGCAGACATTCTTCTGGAGCATCATCACCAGGCGTTCCGTG
CAGCGGGCGGGCACACGGCTCTTCTGCCGAGGCAGCGACGAGCAGGGCCA
TGTTGCGAACTTCGTAGAGACCGAGCAAATAGTGGAGTTCAACGGGCAGC
TGACTGGATTCGTGCAGACACGAGGCAGCATGCCCTTCCACTGGCACCAG
CTGCCCAATTTGCGCTATAAGCCACGACCCGTTCTGGTGCCGGGCAAGGA
TCATTTGGCCGCCTGCGGGCTCCACTTTAAGGAACAGATCCGGCTGTATG
GCAACAATGTGGCTGTGAATCTAGTGGATCACAAAGGTGCCGAAGGCGAG
CTCGAGGCGACCTATGCCCGCCTGGTTCGAGAAATGGGAAATCCACAAGT
GCGATACGAGTCTTTCGACTTCCACAGCGAGTGCCGTAAGATGCGCTGGG
ACCGGCTGAACATACTCATCGATCGCCTCGCCCATGAGCAGGATCAGTTC
GGTGTCTATCATGTCTTCGACGACGGCAAATTGGTGTCCACGCAGACTGG
TGTCTTCCGAACGAATTGTATCGACTGTCTCGATAGGACGAACGTCGTGC
AGAGCATGCTGGCCCGCAGGTCCCTCACTGCGGTGCTCCAGAAGCTGGGA
GTGCTTCATGTGGGCCAGAAAGTGGAACATGCCTCCGACATTTTCGAGAG
CATTTTCAAGGGCGTGTGGGCGGACAACGCGGATCTGGTGTCGCTACAAT
ATTCCGGAACGTGTGCGCTCAAGACCGACTTCACCAGGACGGGCAAGAGG
ACCAAGTCTGGTGCCATGCAGGACGGCAAGAACTCGCTGATGCGCTACTA
TCTGAACAACTTCGCCGATGGCCAGCGGCAAGACAGCATCGATCTTTTCC
TTGGAAAGTATCTGGTCAACGACAACGAGGGCGGTGCCGTGCCATCGCCG
CTGGAGTCGAAGCATGGCTGGCGGTTCTTCACCTTCCCCTCGGTGCTGCT
TGTGGCTGTGGCCATGTTCATGATCACGATGACCTATCCGGCCGAGTTTA
ACACGGAGAACCTGCTGTTCATGCTCTTCTGGGGCGCAATGATCGCTGTC
AGTGCCACGGGCATCCTGCACTACGGCGTCGAGTTCGTGCAGTGGCCGCG
GCTTTTTCCGCCCATCTCCTTTCGAGACCCATGACGTTAGTGTCGTCTAG
CAGAGTCACTGGGAACTACCTCTGCAGCTAAACTGTCCCATTGCTCCGAG
AAAGAACAATTGTAAACCAATTCTGTAATCGATTCGACTTCCTCTCAATT
TCTGTTTTGTTTTATTCTGTTTTTGTTTAGTCTTAAAGCCCCCCCCAGTC
CATTCCCTTCTGCAACTTGTTAGTCATTATATACACAGATCACTTACACT
TAGGCGAGCTTCAGGCGGCTGGAAAAGGGGAATGATTGGGGTTTCGATCG
GGAAGAAGTGGAGTTGTGAAGGCGCCGCTTATTAACTGCGATTAACTGCA
ATGTAGATCAATCACTTTTGTAGAACCATTTAATGACATTAAATAAAGTA
TTTTACGCATTGCTAGAAAAAAAAAAAAAAAAAAA

GH08349.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
Sac1-RA 2504 Sac1-RA 30..2399 1..2370 11850 100 Plus
Sac1.a 2379 Sac1.a 165..2366 169..2370 11010 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1247771..1249966 171..2366 10540 98.9 Plus
chr3L 24539361 chr3L 1247534..1247703 1..170 820 98.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:38:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1248256..1250455 171..2370 11000 100 Plus
3L 28110227 3L 1248019..1248188 1..170 850 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1248256..1250455 171..2370 11000 100 Plus
3L 28103327 3L 1248019..1248188 1..170 850 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:04:51 has no hits.

GH08349.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:06:04 Download gff for GH08349.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1247534..1247703 1..170 98 -> Plus
chr3L 1247771..1249966 171..2366 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:27:02 Download gff for GH08349.complete
Subject Subject Range Query Range Percent Splice Strand
Sac1-RA 1..1779 206..1984 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:28:49 Download gff for GH08349.complete
Subject Subject Range Query Range Percent Splice Strand
Sac1-RB 1..1779 206..1984 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:08:37 Download gff for GH08349.complete
Subject Subject Range Query Range Percent Splice Strand
Sac1-RA 1..1779 206..1984 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:02:11 Download gff for GH08349.complete
Subject Subject Range Query Range Percent Splice Strand
Sac1-RA 1..1779 206..1984 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:29:23 Download gff for GH08349.complete
Subject Subject Range Query Range Percent Splice Strand
Sac1-RA 1..1779 206..1984 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:28:59 Download gff for GH08349.complete
Subject Subject Range Query Range Percent Splice Strand
Sac1-RA 1..2366 1..2366 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:28:49 Download gff for GH08349.complete
Subject Subject Range Query Range Percent Splice Strand
Sac1-RA 1..2366 1..2366 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:08:37 Download gff for GH08349.complete
Subject Subject Range Query Range Percent Splice Strand
Sac1-RA 1..2365 2..2366 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:02:11 Download gff for GH08349.complete
Subject Subject Range Query Range Percent Splice Strand
Sac1-RA 1..2366 1..2366 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:29:23 Download gff for GH08349.complete
Subject Subject Range Query Range Percent Splice Strand
Sac1-RA 1..2365 2..2366 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:06:04 Download gff for GH08349.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1248019..1248188 1..170 100 -> Plus
3L 1248256..1250451 171..2366 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:06:04 Download gff for GH08349.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1248019..1248188 1..170 100 -> Plus
3L 1248256..1250451 171..2366 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:06:04 Download gff for GH08349.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1248019..1248188 1..170 100 -> Plus
3L 1248256..1250451 171..2366 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:08:37 Download gff for GH08349.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1248019..1248188 1..170 100 -> Plus
arm_3L 1248256..1250451 171..2366 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:40:10 Download gff for GH08349.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1248256..1250451 171..2366 100   Plus
3L 1248019..1248188 1..170 100 -> Plus

GH08349.pep Sequence

Translation from 205 to 1983

> GH08349.pep
MDSREENAVYDDMNLYIAPQSFIIEPNGGDELLVIGRHDKVTRVQPASGG
LVANLRPTRRICGVLGTIHLLSCDYLLVATHRLFVGVLNGAVVWRLAGYD
IIPYIPNSFQRKENENYLRLLRQTLDTKFFYFSYRYDLTNSLQRQREVAQ
SRPEVSGLLQRAEQRFVWNGYVLRQFNCDKMEKFQLPLVLGFVSINQVQI
NGQTFFWSIITRRSVQRAGTRLFCRGSDEQGHVANFVETEQIVEFNGQLT
GFVQTRGSMPFHWHQLPNLRYKPRPVLVPGKDHLAACGLHFKEQIRLYGN
NVAVNLVDHKGAEGELEATYARLVREMGNPQVRYESFDFHSECRKMRWDR
LNILIDRLAHEQDQFGVYHVFDDGKLVSTQTGVFRTNCIDCLDRTNVVQS
MLARRSLTAVLQKLGVLHVGQKVEHASDIFESIFKGVWADNADLVSLQYS
GTCALKTDFTRTGKRTKSGAMQDGKNSLMRYYLNNFADGQRQDSIDLFLG
KYLVNDNEGGAVPSPLESKHGWRFFTFPSVLLVAVAMFMITMTYPAEFNT
ENLLFMLFWGAMIAVSATGILHYGVEFVQWPRLFPPISFRDP*

GH08349.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24443-PA 592 GF24443-PA 1..591 1..591 2753 84.5 Plus
Dana\GF18605-PA 1002 GF18605-PA 183..570 106..506 716 39.5 Plus
Dana\GF21310-PA 858 GF21310-PA 86..562 63..502 459 30.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14768-PA 594 GG14768-PA 1..591 1..591 3017 94.1 Plus
Dere\GG24675-PA 1072 GG24675-PA 184..568 106..503 704 38.8 Plus
Dere\GG25009-PA 858 GG25009-PA 71..562 51..502 441 30.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15441-PA 592 GH15441-PA 8..589 7..589 2603 81.6 Plus
Dgri\GH17485-PA 1150 GH17485-PA 186..568 106..501 683 37.5 Plus
Dgri\GH13130-PA 855 GH13130-PA 86..563 63..502 446 30 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
Sac1-PB 592 CG9128-PB 1..592 1..592 3127 100 Plus
Sac1-PA 592 CG9128-PA 1..592 1..592 3127 100 Plus
CG7956-PG 987 CG7956-PG 184..572 106..507 699 38.9 Plus
CG7956-PA 1000 CG7956-PA 184..572 106..507 699 38.9 Plus
CG7956-PD 1070 CG7956-PD 184..572 106..507 699 38.9 Plus
CG7956-PE 662 CG7956-PE 184..568 106..503 692 39.1 Plus
CG7956-PF 1142 CG7956-PF 184..568 106..503 692 39.1 Plus
Synj-PC 1218 CG6562-PC 17..493 18..499 478 29.1 Plus
Synj-PA 1218 CG6562-PA 17..493 18..499 478 29.1 Plus
Synj-PB 1218 CG6562-PB 17..493 18..499 478 29.1 Plus
FIG4-PA 858 CG17840-PA 86..562 63..502 425 29.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13040-PA 588 GI13040-PA 4..585 6..589 2474 77.1 Plus
Dmoj\GI22811-PA 1145 GI22811-PA 183..565 106..501 690 39 Plus
Dmoj\GI22781-PA 856 GI22781-PA 86..563 63..502 453 30.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16165-PA 650 GL16165-PA 3..326 5..330 1459 80.7 Plus
Dper\GL16165-PA 650 GL16165-PA 435..648 377..590 1023 87.4 Plus
Dper\GL23948-PA 1145 GL23948-PA 193..574 106..500 698 39 Plus
Dper\GL14353-PA 858 GL14353-PA 86..562 63..502 454 30.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21564-PA 588 GA21564-PA 3..586 5..590 2675 82.4 Plus
Dpse\GA20719-PC 1073 GA20719-PC 193..574 106..500 702 39.3 Plus
Dpse\GA20719-PB 1202 GA20719-PB 193..574 106..500 698 39 Plus
Dpse\GA19686-PA 1239 GA19686-PA 56..497 60..499 468 29.5 Plus
Dpse\GA14694-PA 858 GA14694-PA 86..562 63..502 454 30.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14388-PA 621 GM14388-PA 30..621 1..592 3133 97.8 Plus
Dsec\GM10430-PA 1072 GM10430-PA 184..568 106..503 709 39.1 Plus
Dsec\GM18479-PA 858 GM18479-PA 86..562 63..502 438 30.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13597-PA 621 GD13597-PA 30..621 1..592 3114 97.3 Plus
Dsim\GD19432-PA 1000 GD19432-PA 184..572 106..507 717 38.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12137-PA 588 GJ12137-PA 4..585 6..589 2558 80 Plus
Dvir\GJ22815-PA 1150 GJ22815-PA 186..568 106..501 709 39.5 Plus
Dvir\GJ23332-PA 886 GJ23332-PA 86..563 63..502 455 30.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21146-PA 590 GK21146-PA 1..587 1..589 2691 83 Plus
Dwil\GK22749-PA 1147 GK22749-PA 184..564 106..500 706 39.1 Plus
Dwil\GK23751-PA 858 GK23751-PA 71..562 51..502 462 30.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21131-PA 591 GE21131-PA 1..591 1..592 3060 95.3 Plus
Dyak\GE25741-PA 1070 GE25741-PA 184..568 106..503 698 38.8 Plus
Dyak\GE11227-PA 734 GE11227-PA 184..568 106..503 697 38.8 Plus
Dyak\GE18296-PA 858 GE18296-PA 71..562 51..502 445 29.9 Plus

GH08349.hyp Sequence

Translation from 205 to 1983

> GH08349.hyp
MDSREENAVYDDMNLYIAPQSFIIEPNGGDELLVIGRHDKVTRVQPASGG
LVANLRPTRRICGVLGTIHLLSCDYLLVATHRLFVGVLNGAVVWRLAGYD
IIPYIPNSFQRKENENYLRLLRQTLDTKFFYFSYRYDLTNSLQRQREVAQ
SRPEVSGLLQRAEQRFVWNGYVLRQFNCDKMEKFQLPLVLGFVSINQVQI
NGQTFFWSIITRRSVQRAGTRLFCRGSDEQGHVANFVETEQIVEFNGQLT
GFVQTRGSMPFHWHQLPNLRYKPRPVLVPGKDHLAACGLHFKEQIRLYGN
NVAVNLVDHKGAEGELEATYARLVREMGNPQVRYESFDFHSECRKMRWDR
LNILIDRLAHEQDQFGVYHVFDDGKLVSTQTGVFRTNCIDCLDRTNVVQS
MLARRSLTAVLQKLGVLHVGQKVEHASDIFESIFKGVWADNADLVSLQYS
GTCALKTDFTRTGKRTKSGAMQDGKNSLMRYYLNNFADGQRQDSIDLFLG
KYLVNDNEGGAVPSPLESKHGWRFFTFPSVLLVAVAMFMITMTYPAEFNT
ENLLFMLFWGAMIAVSATGILHYGVEFVQWPRLFPPISFRDP*

GH08349.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Sac1-PB 592 CG9128-PB 1..592 1..592 3127 100 Plus
Sac1-PA 592 CG9128-PA 1..592 1..592 3127 100 Plus
CG7956-PG 987 CG7956-PG 184..572 106..507 699 38.9 Plus
CG7956-PA 1000 CG7956-PA 184..572 106..507 699 38.9 Plus
CG7956-PE 662 CG7956-PE 184..568 106..503 692 39.1 Plus