Clone GH08385 Report

Search the DGRC for GH08385

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:83
Well:85
Vector:pOT2
Associated Gene/TranscriptCG5498-RB
Protein status:GH08385.pep: gold
Preliminary Size:1508
Sequenced Size:1536

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5498 2000-02-14 Blastp of sequenced clone
CG5498 2001-01-01 Release 2 assignment
CG5498 2003-01-01 Sim4 clustering to Release 3
CG5498 2008-04-29 Release 5.5 accounting
CG5498 2008-08-15 Release 5.9 accounting
CG5498 2008-12-18 5.12 accounting

Clone Sequence Records

GH08385.complete Sequence

1536 bp (1536 high quality bases) assembled on 2000-02-14

GenBank Submission: AF145648

> GH08385.complete
GTTCGACATAAACACACAATCACAAAAGACGCGCAATTTTTATGATCCGG
ATTAAATTCTTGTTTTAAATATGGGCCTTGGAAGCGGTGACAGGGTAAAT
GAAACCGACCACTTCAGCTTTCCCGCAAGCTGGCAGGACAACGGTAGAAT
GCAGGTGCAGTTCGCCATGTTTCGATCGAGGCATCTGGATGCGGAGGGCT
ACGACGCAAAAATGAATTTCTGGATGGATTTAATTGCAAAATATCTAAAG
TTCAGCGGACGACCAATCTTCAGCCTGCGGGATCTGCAACTGCTGTTCAT
GAGGGGTGACCAACTGCCCGCCTGCCTGGACACCGTGATATCCGAGATGC
AGCAGAGGAAGCAGATCCGCTCTCGCAGTGAATTTGAGTACGATCCGGCC
AATTCCTGGGGTGGTTGGCTCGTCAACAGCCTGGTAAAGCGCCCCCTTTC
ATGGAGCTGGTCGAAAATCAAGCACAGCGTGGTGACGGAGGACCTGGAAG
CCTCCGCTTTAATTGAATGGATTCACCTAGATGCCTTAAACAACACTTGC
GATCTCATCGCCGAAAAAGTCCTGTCGGAAAACACTGGAAAACTACTGCA
CTTTAATGCTTTGAAAACGCTTTGTAAGACTCACGGAGTTCCCACTTACT
CAGACAAAGATCTATGCGCTTGCCTGTTGGCCTTAAATGTTCGTCAAATC
TTGGGCCTAGAATTTAAAGTAGAAAAAGGCATACGCCAAATTCACTTGAT
CAAAATACCAAAAAAACCTGGCGACGATCTTAATATAAGCCAAGAAGACC
AGGCCGTCCACAATCTTCAGAATACCCAAGCTCAGTTACTCAAGCAGTTG
GAGGACCTAGAGGAGGAGATCAAGGTGAACGATGACAAAGTGCGCCAGTA
CATGAAGGAGAACAAACGGCAAATGGCAAAAACCTATCTACGAAAAAGGC
ATCTCCTGGAAAAGAATCATGAACGTCGCAGTCTTGCCCTGCACAACATC
GAATCTCTTCTGTCCAGTGTGGATGAGGCCCAGAACAGTGGCGTTGTTCT
GGATGCCTACAAGATCGGATCAAATACCTTGAAGAAGGTTCTCTCGAATT
CTGGATTGAAGTACGACAATGTCGACGAAGTATTGGCCGATGTGCGGGAC
ACGCTCGACCAGCATCGGGAAGTTCAGGACATAATGTCCAATAGCGTTGT
GGAGAACGCGAGCCAGGAAGATGATCAACTTGAGCAGGAATTGCGTGAAC
TGGCTGGAGAATCTGCGCCGGCTACGTTTAGTCCACATATTAATAACAAC
CTAAGGGCGGAGGTTGTGATTACGGACGAGGAGATGATTGCCATGCTGCA
GGATCTTGAGGTGGAGGATGGTACTGTATCGCAATCCAGTGTAAAATCCG
TGAAAACTGCGATATAAATGTTGTGTTTTTTTAAATGGCATGTGAACTGT
TATAATTCTAAATTTATTACATTGTAAAATGCGTTTTTATTACAAGGAAG
AAACGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH08385.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-RB 1665 CG5498-RB 54..1560 2..1508 7535 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20372612..20373151 541..2 2700 100 Minus
chr3L 24539361 chr3L 20371464..20372000 1507..971 2685 100 Minus
chr3L 24539361 chr3L 20372340..20372559 761..542 1100 100 Minus
chr3L 24539361 chr3L 20372069..20372278 971..762 1050 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:38:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20383553..20384092 541..2 2700 100 Minus
3L 28110227 3L 20382404..20382941 1508..971 2690 100 Minus
3L 28110227 3L 20383281..20383500 761..542 1100 100 Minus
3L 28110227 3L 20383010..20383219 971..762 1050 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20376653..20377192 541..2 2700 100 Minus
3L 28103327 3L 20375504..20376041 1508..971 2690 100 Minus
3L 28103327 3L 20376381..20376600 761..542 1100 100 Minus
3L 28103327 3L 20376110..20376319 971..762 1050 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:24:30 has no hits.

GH08385.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:25:19 Download gff for GH08385.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20372069..20372278 762..971 100 <- Minus
chr3L 20371464..20371999 972..1507 100 <- Minus
chr3L 20372340..20372559 542..761 100 <- Minus
chr3L 20372612..20373151 1..541 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:27:11 Download gff for GH08385.complete
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 1..1347 71..1417 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:33:17 Download gff for GH08385.complete
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 1..1347 71..1417 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:09:35 Download gff for GH08385.complete
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 1..1347 71..1417 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:07:47 Download gff for GH08385.complete
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 1..1347 71..1417 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:26:39 Download gff for GH08385.complete
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 1..1347 71..1417 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:35:25 Download gff for GH08385.complete
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 1..1508 1..1507 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:33:17 Download gff for GH08385.complete
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 1..1508 1..1507 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:09:35 Download gff for GH08385.complete
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 16..1523 1..1507 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:07:47 Download gff for GH08385.complete
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 1..1508 1..1507 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:26:39 Download gff for GH08385.complete
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 16..1523 1..1507 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:25:19 Download gff for GH08385.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20382405..20382940 972..1507 100 <- Minus
3L 20383010..20383219 762..971 100 <- Minus
3L 20383281..20383500 542..761 100 <- Minus
3L 20383553..20384092 1..541 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:25:19 Download gff for GH08385.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20382405..20382940 972..1507 100 <- Minus
3L 20383010..20383219 762..971 100 <- Minus
3L 20383281..20383500 542..761 100 <- Minus
3L 20383553..20384092 1..541 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:25:19 Download gff for GH08385.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20382405..20382940 972..1507 100 <- Minus
3L 20383010..20383219 762..971 100 <- Minus
3L 20383281..20383500 542..761 100 <- Minus
3L 20383553..20384092 1..541 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:09:35 Download gff for GH08385.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20375505..20376040 972..1507 100 <- Minus
arm_3L 20376110..20376319 762..971 100 <- Minus
arm_3L 20376381..20376600 542..761 100 <- Minus
arm_3L 20376653..20377192 1..541 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:45:21 Download gff for GH08385.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20375505..20376040 972..1507 100 <- Minus
3L 20376110..20376319 762..971 100 <- Minus
3L 20376381..20376600 542..761 100 <- Minus
3L 20376653..20377192 1..541 99   Minus

GH08385.pep Sequence

Translation from 70 to 1416

> GH08385.pep
MGLGSGDRVNETDHFSFPASWQDNGRMQVQFAMFRSRHLDAEGYDAKMNF
WMDLIAKYLKFSGRPIFSLRDLQLLFMRGDQLPACLDTVISEMQQRKQIR
SRSEFEYDPANSWGGWLVNSLVKRPLSWSWSKIKHSVVTEDLEASALIEW
IHLDALNNTCDLIAEKVLSENTGKLLHFNALKTLCKTHGVPTYSDKDLCA
CLLALNVRQILGLEFKVEKGIRQIHLIKIPKKPGDDLNISQEDQAVHNLQ
NTQAQLLKQLEDLEEEIKVNDDKVRQYMKENKRQMAKTYLRKRHLLEKNH
ERRSLALHNIESLLSSVDEAQNSGVVLDAYKIGSNTLKKVLSNSGLKYDN
VDEVLADVRDTLDQHREVQDIMSNSVVENASQEDDQLEQELRELAGESAP
ATFSPHINNNLRAEVVITDEEMIAMLQDLEVEDGTVSQSSVKSVKTAI*

GH08385.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24143-PA 447 GF24143-PA 1..447 1..447 1768 74.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13321-PA 449 GG13321-PA 1..444 1..445 2111 89.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14595-PA 400 GH14595-PA 1..400 48..447 1201 57.9 Plus
Dgri\GH19872-PA 228 GH19872-PA 20..171 244..398 150 31 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-PB 448 CG5498-PB 1..448 1..448 2297 100 Plus
shrb-PA 226 CG8055-PA 20..171 244..398 177 31 Plus
Vps20-PC 212 CG4071-PC 17..180 239..400 156 25.9 Plus
Vps20-PA 212 CG4071-PA 17..180 239..400 156 25.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13480-PA 450 GI13480-PA 12..449 10..446 1322 58 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11913-PA 447 GL11913-PA 3..441 8..447 1521 65.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18929-PA 444 GA18929-PA 3..439 8..445 1509 65.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22224-PA 447 GM22224-PA 1..447 1..448 2216 93.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12196-PA 448 GD12196-PA 1..448 1..448 2242 94.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11842-PA 447 GJ11842-PA 15..446 15..446 1372 60.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17229-PA 452 GK17229-PA 13..446 15..442 1285 59.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22410-PA 450 GE22410-PA 1..447 1..447 2056 88.6 Plus
Dyak\GE22409-PA 227 GE22409-PA 1..169 1..169 812 86.4 Plus

GH08385.hyp Sequence

Translation from 70 to 1416

> GH08385.hyp
MGLGSGDRVNETDHFSFPASWQDNGRMQVQFAMFRSRHLDAEGYDAKMNF
WMDLIAKYLKFSGRPIFSLRDLQLLFMRGDQLPACLDTVISEMQQRKQIR
SRSEFEYDPANSWGGWLVNSLVKRPLSWSWSKIKHSVVTEDLEASALIEW
IHLDALNNTCDLIAEKVLSENTGKLLHFNALKTLCKTHGVPTYSDKDLCA
CLLALNVRQILGLEFKVEKGIRQIHLIKIPKKPGDDLNISQEDQAVHNLQ
NTQAQLLKQLEDLEEEIKVNDDKVRQYMKENKRQMAKTYLRKRHLLEKNH
ERRSLALHNIESLLSSVDEAQNSGVVLDAYKIGSNTLKKVLSNSGLKYDN
VDEVLADVRDTLDQHREVQDIMSNSVVENASQEDDQLEQELRELAGESAP
ATFSPHINNNLRAEVVITDEEMIAMLQDLEVEDGTVSQSSVKSVKTAI*

GH08385.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-PB 448 CG5498-PB 1..448 1..448 2297 100 Plus
shrb-PA 226 CG8055-PA 20..171 244..398 177 31 Plus
Vps20-PC 212 CG4071-PC 17..180 239..400 156 25.9 Plus
Vps20-PA 212 CG4071-PA 17..180 239..400 156 25.9 Plus