Clone GH08388 Report

Search the DGRC for GH08388

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:83
Well:88
Vector:pOT2
Associated Gene/TranscriptCG3149-RA
Protein status:GH08388.pep: gold
Preliminary Size:2050
Sequenced Size:2021

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3149 2000-02-14 Blastp of sequenced clone
CG3149 2001-01-01 Release 2 assignment
CG3149 2003-01-01 Sim4 clustering to Release 3
CG3149 2008-04-29 Release 5.5 accounting
CG3149 2008-08-15 Release 5.9 accounting
CG3149 2008-12-18 5.12 accounting

Clone Sequence Records

GH08388.complete Sequence

2021 bp (2021 high quality bases) assembled on 2000-02-14

GenBank Submission: AF145649

> GH08388.complete
AGAGAACATTTTGAGTTGTTTTGCCCAACAAATTGGGCTGTGTTTTTAAC
TGATTTTGCCATTCGGACGCGGTGGCATCTTGAGACTGCTTGGAGGAGCC
CGACCAACGGGGTCAGATGGCGCGCAATGTGCTCGAGAGCAGCCTGCTGG
GCGCCGGCTTCAGCATCATCTTTCAGATACTGTGCCGCATCCTCACTTTC
GGCATCAACGCGTACATCGTGCGACATGTGGGCCGCGAGGTGTTGGGCAT
TATGAATGTCCGACTGCTGCTTCTGGAGAGCACCCTGCTCTTCCTCTCCC
GCGAGGCCATCAACCGGGCGGCCCTGAGCGCCAATGCCCAGCAGGGCGAT
CGCTGCTCCTGGGCGCAGCTGATCAACCAGATGTGGCTCACGGTTCCCAT
TTGCGCTGTTTTGTGTGCTCCTTGCCTATACATTTGGCTAAACTGGCTGT
CGGCGGTGGACGCCATCTACGCCTCGCAATACGAGTTCGCCTGCTATGCC
GTGGCCTTTTCCTGCGTCCTGGAATTGATGGCCGAGTCCGCGGTGTTTGT
CGCCCAGGTCTTTTGCTTTGTCAAGCTTAAGATCCTGCTGAATACGCTGC
ACATCCTGGTGCGCTCGGCCATCTTCCTGTGGATTGTCACCGGTGATCGC
AGTGCGGCAATCAATGCATTTGCGATTGCCCAACTATCCAGCGCAGTGAC
CATTGTCCTGGGCCAATATGGCTTCTTTTACTTCTATCTGAAGGGCTTCA
AGGATTTCGTGACCCAGCAGGCGAAAAAGAAACCAGTGGCTCCAAAAGCC
TGGCAGGTCTCACTGTACGAGCACATGGATGACTTCCCCTTCAAGCAGCT
GAGCGACTTCCTGCCCGGCGTGATGTTCAATCCAAATGGAAAGCATTTCA
ACCGGGAACTGCAAACGCTAACCCTCAGCTTTGTGAAGCAGGGCGTGCTG
AAGCAAATCCTCACCGAGGGCGAGAAGTACGTGATGTCCGTGTCGCCGGT
GCTGAGCTTCGGGGAGCAGGCCACCTACGATGTGGTCAACAATTTGGGCA
GCATGGCGGCCCGCTTCATCTTCCGACCCATCGAGGACAGTTCGTACTTT
TACTTCACGCAGACGCTATCCCGGGACATCAAGCTGGCCAAGCAGCCGCA
GGAGCGCGTCCGTCAGGCGAGCAGTGTCCTGAATAATCTGCTCTTGGGTG
TGAGCTCCATTGGCCTGATCGCCTTCACCTTTGGACAGAGCTACTCGTAC
CCAGTGCTGCTGCTTTACGGCGGTCCTGATTTCGTGGCTGGCGGATTGCC
GCAGAGCCTCTTGCAGTGGCACTGCCTTGCGATCTATCTGCTGGCGGTGA
ACGGGATCAGCGAGGGCTATATGTTCGCCACGAACACAAGTCGAGATATC
GACAAGTACAACTATCTGATGGCCATCTTTTCGGTCAGCTTCCTGGTGCT
CTCCTACATTTTGACGGGGATCTTTGGTCCGGTGGGCTTCATCTTCGCCA
ACTGCATTAATATGCTGAGCAGGATTCTGTACAGCACCTACTACATCAGG
CATCAGTATCGGCCCCTGTCGCTGGATCCGTTGCTGGGCCTCTGGCCGGG
AAAACTCTTTGGATGCACGCTCTTCCTGGCCGGCATCGTCTGTTATTGGT
ACCAAAGTTCTGACCTTGCCACACATCTGGGCGTGGGTGTCCTGGCTGGG
CTCGCCTGCCTTCTGTCCTGGGCGTTGGCTCATCGAGATCTGGTGCGACT
GGCCTGGCGATATGGTCGCCGCATCAAGATCGAATAGGGACCATGCTGTT
GGAATTGTTATCCTCGCTTCCCTCGCACCGATGAACCGCAATGAAACGCA
CAGTTTGAGTAATAATGGCATATTTATACATAGTTGACATTTGTAAATTA
ATTCCAAAATTAAGTTATGTACTTATTGAGTGTTTGTAGAGCCTTGATTG
CTTATTTAACCTTAAGACATGCATTAAAAGACAACGATTACTGTTTAAAA
AAAAAAAAAAAAAAAAAAAAA

GH08388.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3149-RA 2348 CG3149-RA 276..2272 1..1997 9985 100 Plus
cv-RA 1917 cv-RA 1777..1917 1997..1857 705 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5585769..5587030 1649..388 6235 99.6 Minus
chrX 22417052 chrX 5585353..5585700 1996..1649 1740 100 Minus
chrX 22417052 chrX 5587099..5587316 392..175 1090 100 Minus
chrX 22417052 chrX 5587414..5587589 176..1 880 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:38:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5693361..5694622 1649..388 6295 99.9 Minus
X 23542271 X 5692944..5693292 1997..1649 1745 100 Minus
X 23542271 X 5694691..5694908 392..175 1090 100 Minus
X 23542271 X 5695006..5695181 176..1 880 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5701459..5702720 1649..388 6295 99.9 Minus
X 23527363 X 5701042..5701390 1997..1649 1745 100 Minus
X 23527363 X 5702789..5703006 392..175 1090 100 Minus
X 23527363 X 5703104..5703279 176..1 880 100 Minus
Blast to na_te.dros performed on 2019-03-17 00:06:47 has no hits.

GH08388.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:07:56 Download gff for GH08388.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5585353..5585699 1650..1996 100 <- Minus
chrX 5585769..5587026 392..1649 99 <- Minus
chrX 5587100..5587314 177..391 100 <- Minus
chrX 5587414..5587589 1..176 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:27:14 Download gff for GH08388.complete
Subject Subject Range Query Range Percent Splice Strand
CG3149-RA 1..1671 117..1787 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:25:41 Download gff for GH08388.complete
Subject Subject Range Query Range Percent Splice Strand
CG3149-RA 1..1671 117..1787 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:58:03 Download gff for GH08388.complete
Subject Subject Range Query Range Percent Splice Strand
CG3149-RA 1..1671 117..1787 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:58:41 Download gff for GH08388.complete
Subject Subject Range Query Range Percent Splice Strand
CG3149-RA 1..1671 117..1787 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:12:14 Download gff for GH08388.complete
Subject Subject Range Query Range Percent Splice Strand
CG3149-RA 1..1671 117..1787 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:24:19 Download gff for GH08388.complete
Subject Subject Range Query Range Percent Splice Strand
CG3149-RA 26..2021 1..1996 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:25:40 Download gff for GH08388.complete
Subject Subject Range Query Range Percent Splice Strand
CG3149-RA 26..2021 1..1996 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:58:03 Download gff for GH08388.complete
Subject Subject Range Query Range Percent Splice Strand
CG3149-RA 25..2020 1..1996 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:58:41 Download gff for GH08388.complete
Subject Subject Range Query Range Percent Splice Strand
CG3149-RA 26..2021 1..1996 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:14 Download gff for GH08388.complete
Subject Subject Range Query Range Percent Splice Strand
CG3149-RA 25..2020 1..1996 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:07:56 Download gff for GH08388.complete
Subject Subject Range Query Range Percent Splice Strand
X 5695006..5695181 1..176 100   Minus
X 5692945..5693291 1650..1996 100 <- Minus
X 5693361..5694618 392..1649 100 <- Minus
X 5694692..5694906 177..391 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:07:56 Download gff for GH08388.complete
Subject Subject Range Query Range Percent Splice Strand
X 5695006..5695181 1..176 100   Minus
X 5692945..5693291 1650..1996 100 <- Minus
X 5693361..5694618 392..1649 100 <- Minus
X 5694692..5694906 177..391 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:07:56 Download gff for GH08388.complete
Subject Subject Range Query Range Percent Splice Strand
X 5695006..5695181 1..176 100   Minus
X 5692945..5693291 1650..1996 100 <- Minus
X 5693361..5694618 392..1649 100 <- Minus
X 5694692..5694906 177..391 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:58:03 Download gff for GH08388.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5586978..5587324 1650..1996 100 <- Minus
arm_X 5587394..5588651 392..1649 100 <- Minus
arm_X 5588725..5588939 177..391 100 <- Minus
arm_X 5589039..5589214 1..176 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:36:31 Download gff for GH08388.complete
Subject Subject Range Query Range Percent Splice Strand
X 5703104..5703279 1..176 100   Minus
X 5701043..5701389 1650..1996 100 <- Minus
X 5701459..5702716 392..1649 100 <- Minus
X 5702790..5703004 177..391 100 <- Minus

GH08388.hyp Sequence

Translation from 116 to 1786

> GH08388.hyp
MARNVLESSLLGAGFSIIFQILCRILTFGINAYIVRHVGREVLGIMNVRL
LLLESTLLFLSREAINRAALSANAQQGDRCSWAQLINQMWLTVPICAVLC
APCLYIWLNWLSAVDAIYASQYEFACYAVAFSCVLELMAESAVFVAQVFC
FVKLKILLNTLHILVRSAIFLWIVTGDRSAAINAFAIAQLSSAVTIVLGQ
YGFFYFYLKGFKDFVTQQAKKKPVAPKAWQVSLYEHMDDFPFKQLSDFLP
GVMFNPNGKHFNRELQTLTLSFVKQGVLKQILTEGEKYVMSVSPVLSFGE
QATYDVVNNLGSMAARFIFRPIEDSSYFYFTQTLSRDIKLAKQPQERVRQ
ASSVLNNLLLGVSSIGLIAFTFGQSYSYPVLLLYGGPDFVAGGLPQSLLQ
WHCLAIYLLAVNGISEGYMFATNTSRDIDKYNYLMAIFSVSFLVLSYILT
GIFGPVGFIFANCINMLSRILYSTYYIRHQYRPLSLDPLLGLWPGKLFGC
TLFLAGIVCYWYQSSDLATHLGVGVLAGLACLLSWALAHRDLVRLAWRYG
RRIKIE*

GH08388.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3149-PA 556 CG3149-PA 1..556 1..556 2871 100 Plus

GH08388.pep Sequence

Translation from 116 to 1786

> GH08388.pep
MARNVLESSLLGAGFSIIFQILCRILTFGINAYIVRHVGREVLGIMNVRL
LLLESTLLFLSREAINRAALSANAQQGDRCSWAQLINQMWLTVPICAVLC
APCLYIWLNWLSAVDAIYASQYEFACYAVAFSCVLELMAESAVFVAQVFC
FVKLKILLNTLHILVRSAIFLWIVTGDRSAAINAFAIAQLSSAVTIVLGQ
YGFFYFYLKGFKDFVTQQAKKKPVAPKAWQVSLYEHMDDFPFKQLSDFLP
GVMFNPNGKHFNRELQTLTLSFVKQGVLKQILTEGEKYVMSVSPVLSFGE
QATYDVVNNLGSMAARFIFRPIEDSSYFYFTQTLSRDIKLAKQPQERVRQ
ASSVLNNLLLGVSSIGLIAFTFGQSYSYPVLLLYGGPDFVAGGLPQSLLQ
WHCLAIYLLAVNGISEGYMFATNTSRDIDKYNYLMAIFSVSFLVLSYILT
GIFGPVGFIFANCINMLSRILYSTYYIRHQYRPLSLDPLLGLWPGKLFGC
TLFLAGIVCYWYQSSDLATHLGVGVLAGLACLLSWALAHRDLVRLAWRYG
RRIKIE*

GH08388.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22446-PA 556 GF22446-PA 1..556 1..556 2634 91.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18478-PA 556 GG18478-PA 1..556 1..556 2912 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12413-PA 562 GH12413-PA 1..562 1..556 2342 80.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3149-PA 556 CG3149-PA 1..556 1..556 2871 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15868-PA 560 GI15868-PA 1..560 1..556 2394 82.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19911-PA 356 GL19911-PA 1..356 201..556 1645 84.8 Plus
Dper\GL19910-PA 174 GL19910-PA 1..159 1..159 705 92.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16280-PA 556 GA16280-PA 1..556 1..556 2544 87.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12626-PA 556 GM12626-PA 1..556 1..556 2920 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16242-PA 556 GD16242-PA 1..556 1..556 2933 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19026-PA 561 GJ19026-PA 1..561 1..556 2318 82 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25490-PA 565 GK25490-PA 1..565 1..556 2384 82.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16795-PA 556 GE16795-PA 1..556 1..556 2893 98.2 Plus