Clone GH08391 Report

Search the DGRC for GH08391

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:83
Well:91
Vector:pOT2
Associated Gene/TranscriptCNT1-RB
Protein status:GH08391.pep: gold
Sequenced Size:2795

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11778 2007-09-25 DGC5 pick
CG11778 2008-04-29 Picked prior to 5.5
CG11778 2008-08-15 Release 5.9 accounting
CG11778 2008-12-18 5.12 accounting

Clone Sequence Records

GH08391.complete Sequence

2795 bp assembled on 2008-05-22

GenBank Submission: BT032887

> GH08391.complete
CTGTTTCTCATTTATACACACAATGGCAGAACCAATAGAAGGCGAACAGG
AGGAAAAGCCTCCGCCATCGAGGGCAAAGCGAATCACCTATCTGGTACTC
CATGTGCTGCTCCATATCATATTCATATCTTACTTTACGGCAGCCACAAT
CATTTTCATCTTTTACGACAAGGATTCCAAAGAATGCTGGCCCAATAGGG
GCTCGGAAGCCACAACCGAATCGATAGATAACTCAACCGAAGATGATGAT
GATGATGATTATGACACAGAAGAAACTTCTGAGAAGCCAGTGCCAGAGGT
TAAGCCAAAACTATTGTGCCAAATTAACTGGTGTCATGGATACGGGTTTC
TCATCGTCTTGTTCATCTTGTTTTATATCCTATGGCTGTACTACTGGGTA
TTTAAGCCATTCGTGGGCATCAAGCTGTATAATAACTACCTGGAACCAGT
GATTGACAAATGGATTGCGTTTAGTCGCCAGTGGATAGTGTCCGGCGTAA
TGCTGGCGATTGTGCTCGCTGTGGTGGTGGCATACCTCGGATTCGAGTGC
CGCAATGACGCATACAAGGCCATCGGACTGCTCGGACCTGTGTGCTTTGT
CCTTATCGGATTCGCCGTGTCCAAGCACCACTTGCAAGTACCTTGGCGCA
TAGTGACCCACGGTCTCCTGGGACAGCTGCTGCTGGGCATACTCTGCCTG
CGCCTCCCCTTTGGCCGGTCCATCTTTCAATGCCTTGGGGACAAGGTGAC
GATATTTCTGAACTACGCACAGCACGGAGCACGCTTTGTGTACGGGGATC
GCATTTGCGATGAGTACGTCTTTGCATTTGCCATACTGGCGGTGGTGTTC
TTCTTCAGCGTGATCACCAGCATTATGTATTACCTTGGCTGGATGCAGTT
CATCCTGAACGGTTTTGGGTTCCTCTTGCAGGCCATGGTGGGCACCACCG
TTTGCGAAAGTGTAAATGCAGCGGGCAACGTGTTTCTAAGCATGACCGAG
AGCCCTCTGGTCATCCGGCCGTACATCGAAATACTGACCGTCAGCGAGTT
GCACGCTATATGCACCTCCGGCTACGCGACAGTGGCCGGTACTGTCTTGG
GGGCTTATGTGTCCTTCGGTGCTTCCGCCAGCTTTCTTATCGCAGCCAGC
GTAATGGCTGCTCCGGGTTCACTGGCTTTCGCCAAACTGTTCTACCCCGA
GACCGAGGAATCTCTGACCAGGTCCGACAACATTAAGCTGGAAAGCTCGA
CGGATACGTCTATTTTGGATGCGGCCGCCTCGGGAGCTGCAGCAGCCTTG
TTGATTGTGCTCGGAATCGTCTCGAATATCATCGCCTTCCTAGCCATTGT
GTTCTTCCTAGACGCTGTAACGGAGTGGATTTTCGAGCTAATTGGACTGC
ATAACATCACCCTACTCTACATTCTCTCCCAGATCTTTATCCCGATTGTC
TTCGTGATGGGCGTGCCGTGGCACGATTGTCAAGCAATTGGCCTGGTGGT
GGCCCAAAAGTCGTTCATAAACGAGTTTGTGGCTTATAGAAACCTGGGCA
TATTGGTTAGCGATAAAAAGGTTGATCCGCGGAGCGCTGCCATAGCCACT
TTTGCCCTTTGTGGGTTTGCCAATCCCGGATCCCTGGGCATTGTCATCGC
TTCGCTGAGTGCAATGGCACCATCCCGACGATCAGACATCACCAGGGTAG
CCTTTCGATCCTATTTCGCAGGCAGTTTCGTTAGCTTTACATCCGCTTCG
CTTGCAGGGATTCTTATTCAAAATGAGTACACAGGTGGTAATTAATTGAT
TTAGGTAAGTGAACGATACGAAAAGCATAGAGCAGGGAGCTAGGGTACAA
TTCCACTCAAATTGGCCATTACCTTCTTGAGCAATTCCCAGTCGGCAGCA
TCGAAATTCGCGGTGCACTGGGTCAGTTGAAGAGAAGCCTCATATATATT
ACGAAGGATTTCTTTAGGCGCCAATTCACTCCGTCGACGTTTTAGACTAG
AGACCGGACATTTATGATCTCCATGGCGAATGTAGCTTGATTTACTGAGA
TCAAATGAACCGTCGACAACAGTTCCGGGTTCGACATGCAATGCCTTAAA
CAATGGGTATATTGCATGGCGGGCACTAAATGCTCTTAGTTGGGCGTCAT
CGCTGACTTTGCAGGAGTCGAGGAATTTCTCGCGATACCAGTTTGTGCAT
CCAGCATTTGGAGGCAGTCCCCTAAGTATAAGTAATTTGGTGGATCCATT
CGCACGCGCTAGTAGTTTGAAGTAAACATTAGCAAAGCTAATGCTCTTGT
CAATGCCTAAAAGTTTATTGGCCATTTCCGATGTCCGCTGAAACCAATGG
GAACAGTCGATTTGATCGTGGTGCACCAAAAGTTCCAGTAGAGCAACCTT
TGGGTATAAAAAATCAAGTACAACTCAACTTTTGTGGGCGCTGAGGTGGA
GATGAGTTCTAAGCGCTTCAATATCTTCATTCCCACGTGGCCATCTGATT
TTGCGACGACAGACAGGTGCCGGAAGTTTTGAATGCTTATGACAGGAAGT
TCCTGCTTTCCCAAGCAGTGGAAGTACCTAAGGAATCGTTGTACATGCAA
TTGGCTTGGATTTGTGGAAAACATGGCGTAAGAATTATTGCACTTATGCC
AGTGAGCCATAGCCTCTTTTATGGCATGATCTGTCCAGCATTTGTTGGCC
TCTTTTAGCCTAAAAACATAGAATAGTGAAATAAATTTTAAAATGTATGA
TTTATAATTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH08391.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11778-RB 2830 CG11778-RB 69..2830 1..2762 13795 99.9 Plus
CG13742.a 2310 CG13742.a 1601..2243 2398..1756 3200 99.8 Minus
CG13742-RB 2364 CG13742-RB 1655..2297 2398..1756 3200 99.8 Minus
CG13742.a 2310 CG13742.a 1296..1593 2714..2417 1475 99.6 Minus
CG13742-RB 2364 CG13742-RB 1350..1647 2714..2417 1475 99.6 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4970769..4971535 483..1249 3835 100 Plus
chr2R 21145070 chr2R 4972218..4972880 1756..2418 3300 99.8 Plus
chr2R 21145070 chr2R 4972930..4973275 2417..2762 1715 99.7 Plus
chr2R 21145070 chr2R 4971591..4971918 1249..1576 1640 100 Plus
chr2R 21145070 chr2R 4970227..4970544 167..484 1590 100 Plus
chr2R 21145070 chr2R 4971979..4972160 1577..1758 910 100 Plus
chr2R 21145070 chr2R 4970010..4970176 1..167 835 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:38:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9083211..9083977 483..1249 3835 100 Plus
2R 25286936 2R 9084660..9085322 1756..2418 3300 99.8 Plus
2R 25286936 2R 9085372..9085719 2417..2764 1740 100 Plus
2R 25286936 2R 9084033..9084360 1249..1576 1640 100 Plus
2R 25286936 2R 9082669..9082986 167..484 1590 100 Plus
2R 25286936 2R 9084421..9084602 1577..1758 910 100 Plus
2R 25286936 2R 9082452..9082618 1..167 835 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9084410..9085176 483..1249 3835 100 Plus
2R 25260384 2R 9085859..9086521 1756..2418 3300 99.8 Plus
2R 25260384 2R 9086571..9086918 2417..2764 1740 100 Plus
2R 25260384 2R 9085232..9085559 1249..1576 1640 100 Plus
2R 25260384 2R 9083868..9084185 167..484 1590 100 Plus
2R 25260384 2R 9085620..9085801 1577..1758 910 100 Plus
2R 25260384 2R 9083651..9083817 1..167 835 100 Plus
2R 25260384 2R 9082395..9082483 939..1027 175 79.7 Plus
2R 25260384 2R 9083170..9083259 1583..1672 165 78.8 Plus
Blast to na_te.dros performed 2019-03-15 19:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 1029..1066 2718..2755 118 78.9 Plus

GH08391.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:47:26 Download gff for GH08391.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4970010..4970176 1..167 100 -> Plus
chr2R 4970228..4970543 168..483 100 -> Plus
chr2R 4970770..4971534 484..1248 100 -> Plus
chr2R 4971591..4971918 1249..1576 100 -> Plus
chr2R 4971979..4972159 1577..1757 100 -> Plus
chr2R 4972220..4972880 1758..2418 99 -> Plus
chr2R 4972932..4973275 2419..2762 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:27:16 Download gff for GH08391.complete
Subject Subject Range Query Range Percent Splice Strand
CG11778-RB 1..1773 23..1795 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:37:38 Download gff for GH08391.complete
Subject Subject Range Query Range Percent Splice Strand
CG11778-RB 1..1773 23..1795 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:01:58 Download gff for GH08391.complete
Subject Subject Range Query Range Percent Splice Strand
CNT1-RB 1..1773 23..1795 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:43:03 Download gff for GH08391.complete
Subject Subject Range Query Range Percent Splice Strand
CG11778-RA 1..1559 23..1584 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:34 Download gff for GH08391.complete
Subject Subject Range Query Range Percent Splice Strand
CNT1-RB 1..1773 23..1795 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:06:43 Download gff for GH08391.complete
Subject Subject Range Query Range Percent Splice Strand
CG11778-RB 16..2777 1..2762 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:37:37 Download gff for GH08391.complete
Subject Subject Range Query Range Percent Splice Strand
CG11778-RB 16..2777 1..2762 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:58 Download gff for GH08391.complete
Subject Subject Range Query Range Percent Splice Strand
CNT1-RB 58..2819 1..2762 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:43:03 Download gff for GH08391.complete
Subject Subject Range Query Range Percent Splice Strand
CG11778-RA 16..1596 1..1584 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:34 Download gff for GH08391.complete
Subject Subject Range Query Range Percent Splice Strand
CNT1-RB 58..2819 1..2762 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:47:26 Download gff for GH08391.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9082452..9082618 1..167 100 -> Plus
2R 9082670..9082985 168..483 100 -> Plus
2R 9083212..9083976 484..1248 100 -> Plus
2R 9084033..9084360 1249..1576 100 -> Plus
2R 9084421..9084601 1577..1757 100 -> Plus
2R 9084662..9085322 1758..2418 99 -> Plus
2R 9085374..9085717 2419..2762 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:47:26 Download gff for GH08391.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9082452..9082618 1..167 100 -> Plus
2R 9082670..9082985 168..483 100 -> Plus
2R 9083212..9083976 484..1248 100 -> Plus
2R 9084033..9084360 1249..1576 100 -> Plus
2R 9084421..9084601 1577..1757 100 -> Plus
2R 9084662..9085322 1758..2418 99 -> Plus
2R 9085374..9085717 2419..2762 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:47:26 Download gff for GH08391.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9082452..9082618 1..167 100 -> Plus
2R 9082670..9082985 168..483 100 -> Plus
2R 9083212..9083976 484..1248 100 -> Plus
2R 9084033..9084360 1249..1576 100 -> Plus
2R 9084421..9084601 1577..1757 100 -> Plus
2R 9084662..9085322 1758..2418 99 -> Plus
2R 9085374..9085717 2419..2762 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:58 Download gff for GH08391.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4969957..4970123 1..167 100 -> Plus
arm_2R 4970175..4970490 168..483 100 -> Plus
arm_2R 4970717..4971481 484..1248 100 -> Plus
arm_2R 4971538..4971865 1249..1576 100 -> Plus
arm_2R 4971926..4972106 1577..1757 100 -> Plus
arm_2R 4972167..4972827 1758..2418 99 -> Plus
arm_2R 4972879..4973222 2419..2762 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:20:32 Download gff for GH08391.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9083869..9084184 168..483 100 -> Plus
2R 9084411..9085175 484..1248 100 -> Plus
2R 9085232..9085559 1249..1576 100 -> Plus
2R 9085620..9085800 1577..1757 100 -> Plus
2R 9085861..9086521 1758..2418 99 -> Plus
2R 9086573..9086916 2419..2762 100   Plus
2R 9083651..9083817 1..167 100 -> Plus

GH08391.pep Sequence

Translation from 1 to 1794

> GH08391.pep
CFSFIHTMAEPIEGEQEEKPPPSRAKRITYLVLHVLLHIIFISYFTAATI
IFIFYDKDSKECWPNRGSEATTESIDNSTEDDDDDDYDTEETSEKPVPEV
KPKLLCQINWCHGYGFLIVLFILFYILWLYYWVFKPFVGIKLYNNYLEPV
IDKWIAFSRQWIVSGVMLAIVLAVVVAYLGFECRNDAYKAIGLLGPVCFV
LIGFAVSKHHLQVPWRIVTHGLLGQLLLGILCLRLPFGRSIFQCLGDKVT
IFLNYAQHGARFVYGDRICDEYVFAFAILAVVFFFSVITSIMYYLGWMQF
ILNGFGFLLQAMVGTTVCESVNAAGNVFLSMTESPLVIRPYIEILTVSEL
HAICTSGYATVAGTVLGAYVSFGASASFLIAASVMAAPGSLAFAKLFYPE
TEESLTRSDNIKLESSTDTSILDAAASGAAAALLIVLGIVSNIIAFLAIV
FFLDAVTEWIFELIGLHNITLLYILSQIFIPIVFVMGVPWHDCQAIGLVV
AQKSFINEFVAYRNLGILVSDKKVDPRSAAIATFALCGFANPGSLGIVIA
SLSAMAPSRRSDITRVAFRSYFAGSFVSFTSASLAGILIQNEYTGGN*

GH08391.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12226-PA 640 GF12226-PA 13..613 19..592 1835 61.1 Plus
Dana\GF12225-PA 605 GF12225-PA 33..584 11..592 1375 49.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23408-PA 605 GG23408-PA 1..605 8..597 2562 86.4 Plus
Dere\GG23407-PA 603 GG23407-PA 44..582 13..592 1320 49.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21636-PA 588 GH21636-PA 28..569 12..592 1304 49.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
CNT1-PB 590 CG11778-PB 1..590 8..597 3035 100 Plus
CNT2-PC 603 CG8083-PC 44..582 13..592 1398 49.5 Plus
CNT2-PB 602 CG8083-PB 43..581 13..592 1398 49.5 Plus
CNT2-PA 603 CG8083-PA 44..582 13..592 1398 49.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20090-PA 594 GI20090-PA 25..574 2..592 1312 48.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17615-PA 603 GL17615-PA 2..574 10..592 1936 67.2 Plus
Dper\GL17614-PA 607 GL17614-PA 55..585 24..591 1306 48.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11193-PA 595 GA11193-PA 2..568 10..586 1942 67.6 Plus
Dpse\GA20810-PA 607 GA20810-PA 55..585 24..591 1309 48.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21089-PA 611 GM21089-PA 1..581 8..586 2662 92.9 Plus
Dsec\GM21088-PA 603 GM21088-PA 44..587 13..597 1325 49.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10626-PA 611 GD10626-PA 1..581 8..586 2693 93.3 Plus
Dsim\GD10625-PA 603 GD10625-PA 44..587 13..597 1329 49.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19856-PA 599 GJ19856-PA 75..576 83..592 1271 51.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14798-PA 625 GK14798-PA 8..606 17..597 1896 60.5 Plus
Dwil\GK17994-PA 600 GK17994-PA 91..581 104..594 1361 55.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19249-PA 533 GE19249-PA 1..519 8..525 2314 91.7 Plus
Dyak\GE19248-PA 603 GE19248-PA 40..587 10..597 1323 49 Plus

GH08391.hyp Sequence

Translation from 1 to 1794

> GH08391.hyp
CFSFIHTMAEPIEGEQEEKPPPSRAKRITYLVLHVLLHIIFISYFTAATI
IFIFYDKDSKECWPNRGSEATTESIDNSTEDDDDDDYDTEETSEKPVPEV
KPKLLCQINWCHGYGFLIVLFILFYILWLYYWVFKPFVGIKLYNNYLEPV
IDKWIAFSRQWIVSGVMLAIVLAVVVAYLGFECRNDAYKAIGLLGPVCFV
LIGFAVSKHHLQVPWRIVTHGLLGQLLLGILCLRLPFGRSIFQCLGDKVT
IFLNYAQHGARFVYGDRICDEYVFAFAILAVVFFFSVITSIMYYLGWMQF
ILNGFGFLLQAMVGTTVCESVNAAGNVFLSMTESPLVIRPYIEILTVSEL
HAICTSGYATVAGTVLGAYVSFGASASFLIAASVMAAPGSLAFAKLFYPE
TEESLTRSDNIKLESSTDTSILDAAASGAAAALLIVLGIVSNIIAFLAIV
FFLDAVTEWIFELIGLHNITLLYILSQIFIPIVFVMGVPWHDCQAIGLVV
AQKSFINEFVAYRNLGILVSDKKVDPRSAAIATFALCGFANPGSLGIVIA
SLSAMAPSRRSDITRVAFRSYFAGSFVSFTSASLAGILIQNEYTGGN*

GH08391.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
CNT1-PB 590 CG11778-PB 1..590 8..597 3035 100 Plus
CG8083-PB 602 CG8083-PB 43..581 13..592 1398 49.5 Plus
CG8083-PC 603 CG8083-PC 44..582 13..592 1398 49.5 Plus
CG8083-PA 603 CG8083-PA 44..582 13..592 1398 49.5 Plus