Clone GH08406 Report

Search the DGRC for GH08406

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:84
Well:6
Vector:pOT2
Associated Gene/TranscriptCG42568-RA
Protein status:GH08406.pep: gold
Sequenced Size:1470

Clone Sequence Records

GH08406.complete Sequence

1470 bp assembled on 2011-03-28

GenBank Submission: BT126284.1

> GH08406.complete
AAGGCCCTCAAATCAGCTGTTTTGTGTTTTGATTTTATTTTGAAAGTCCT
AGTTTAAAATTATGCTTTCTCCGACAGATCAGCACAAATAATACTAATAA
AGCTCACAATGCTAAGGTTGTGCCTTCCAACTCGAGCTGGATATGTGCTT
TCTCGAACGACAAACCAAGAAAACCCGAAACACACTATGAAGTTTTGAAT
ATTCGCATGATTGCAGCACCCGTGAAGTCCGTAATGCCTTTGTCCAGCTC
TCCAAATTGTACCACCCAGATGTTAAGAGCAATGCTGCGTGTCCGGAGCG
CACAGCCCGATTTGTTCAGATCTCCGAGGCGTACAAGACCCTGATAAAGC
CGGAGCGGAGGAGAGACTACGATGACAGCCTGCTGTGGCAGCCATCGCGC
TCGGACCGCAGTCCCGTTGGCGAGACGGTCAATCCCGGCCAGGCGTGGGA
TGTGAGGCCCAACTACGATCCCAATCCAGGACCGTACTATGGCATCCGTG
GTCTGAAGAGGGTCTCCAACTGGCAGGTGGCCGTGGTTCTGATGGCCCTA
GGCTTCGTCGGGGCACTCTTTGGCTTCACCTCCGTCAGGTCGTCCTTTAA
ACTGAGTCGCCAGATCCAGGACGAAATCTCAGCAGAGGCTAATTCCCATC
ATGCCGCCGTTGTGGCCGATGCCCAGAAGTACGGCAACGAGGAGCAAGTG
CGTCGTATGGTGGACCGTATGTCGCGGAGTCCTTTCAACCAGTCTTCGGC
TAAGTAATCCCATTTCCCCATTTCCTTTGGTCAAATTAAACGTGAAAGCA
TATAGCTATTTTTGAATATTTTGTTTTGGTTCAAGGCAAAGCAAACTCAA
GAGCGATTGCTTAAGCGCCAGTGTGTTTTGCCAAAATTAAACAATTTCGT
CGGCCTTCGTAGGCGATTGAGCAAACTGTGCAAACAACCAGGGCGACTAC
TTAAGCACTCCGGCCGCATCCATCGAAGCATATTAAAAGCAATCCTACTA
CCAACATGAAGTCAACTATTCAAATCGGCACCCTGTGCATCGTGGTGCTC
GTGATCTGCTGCCTGGACTTCTCCAGTTCACAGAACTCCTCCTCCACTTC
CACCAGTCCCACCTACAGCTCGTCCAGCACGCCCAAGAAAGTGTACCTGT
CCAACTTGACGTACTCGATTGTGAGGAAGATCCGTGTGGGCACCACCACC
GCCAGCAGCACCAGCCGTAGTTCCAGGACCAGGAGCAACCGGAAACTGAA
CGCCAAGAAGACCCAGGCCAAACGGAGCCAGGCCAAGCGCTCCGGCAAGA
ACAGGAAGTCGAACTCCCGCCGTGCCAGCAGGGGCTAAGTTGTTGTCCAG
TCGGTTATGTTATTAAGACAAGGTTTTATTTTGAGCTCGTTCTAAACACA
AAACACTTAAGTTTACCGTCGCGACGGGAAGATTAAATTAGATAAATACG
TAAAAAAAAAAAAAAAAAAA

GH08406.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20043674..20044539 1451..586 4330 100 Minus
chr2R 21145070 chr2R 20044596..20044927 590..259 1660 100 Minus
chr2R 21145070 chr2R 20045155..20045302 148..1 740 100 Minus
chr2R 21145070 chr2R 20044980..20045091 259..149 510 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24157666..24158533 1453..586 4340 100 Minus
2R 25286936 2R 24158590..24158921 590..259 1660 100 Minus
2R 25286936 2R 24159149..24159296 148..1 740 100 Minus
2R 25286936 2R 24158974..24159085 259..149 510 99.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24158865..24159732 1453..586 4340 100 Minus
2R 25260384 2R 24159789..24160120 590..259 1660 100 Minus
2R 25260384 2R 24160348..24160495 148..1 740 100 Minus
2R 25260384 2R 24160173..24160284 259..149 520 99.1 Minus
Blast to na_te.dros performed 2019-03-16 23:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 1390..1426 835..799 113 78.4 Minus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 7178..7246 830..762 111 62.3 Minus

GH08406.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:04:44 Download gff for GH08406.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20043674..20044536 589..1451 100 <- Minus
chr2R 20044598..20044926 260..588 100 <- Minus
chr2R 20044980..20045091 149..259 99 <- Minus
chr2R 20045155..20045302 1..148 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-11 16:14:55 Download gff for GH08406.complete
Subject Subject Range Query Range Percent Splice Strand
DnaJ-60-RC 1..654 109..757 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:03:13 Download gff for GH08406.complete
Subject Subject Range Query Range Percent Splice Strand
DnaJ-60-RA 1..654 109..757 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:35:02 Download gff for GH08406.complete
Subject Subject Range Query Range Percent Splice Strand
DnaJ-60-RA 1..654 109..757 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-11 16:14:54 Download gff for GH08406.complete
Subject Subject Range Query Range Percent Splice Strand
CG42568-RA 1..1452 1..1451 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:03:13 Download gff for GH08406.complete
Subject Subject Range Query Range Percent Splice Strand
CG42568-RA 17..1468 1..1451 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:35:02 Download gff for GH08406.complete
Subject Subject Range Query Range Percent Splice Strand
CG42568-RA 17..1468 1..1451 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:04:44 Download gff for GH08406.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24157668..24158530 589..1451 100 <- Minus
2R 24158592..24158920 260..588 100 <- Minus
2R 24158974..24159085 149..259 99 <- Minus
2R 24159149..24159296 1..148 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:04:44 Download gff for GH08406.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24157668..24158530 589..1451 100 <- Minus
2R 24158592..24158920 260..588 100 <- Minus
2R 24158974..24159085 149..259 99 <- Minus
2R 24159149..24159296 1..148 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:04:44 Download gff for GH08406.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24157668..24158530 589..1451 100 <- Minus
2R 24158592..24158920 260..588 100 <- Minus
2R 24158974..24159085 149..259 99 <- Minus
2R 24159149..24159296 1..148 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:03:13 Download gff for GH08406.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20045191..20046053 589..1451 100 <- Minus
arm_2R 20046115..20046443 260..588 100 <- Minus
arm_2R 20046497..20046608 149..259 99 <- Minus
arm_2R 20046672..20046819 1..148 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:03:35 Download gff for GH08406.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24158885..24159747 589..1451 100 <- Minus
2R 24159809..24160137 260..588 100 <- Minus
2R 24160191..24160302 149..259 99 <- Minus
2R 24160366..24160513 1..148 100   Minus

GH08406.pep Sequence

Translation from 1005 to 1337

> GH08406.pep
MKSTIQIGTLCIVVLVICCLDFSSSQNSSSTSTSPTYSSSSTPKKVYLSN
LTYSIVRKIRVGTTTASSTSRSSRTRSNRKLNAKKTQAKRSQAKRSGKNR
KSNSRRASRG*

GH08406.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19947-PA 368 GG19947-PA 208..366 1..107 212 49.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG42568-PB 110 CG42568-PB 1..110 1..110 535 100 Plus
CG42568-PA 110 CG42568-PA 1..110 1..110 535 100 Plus
CG34273-PA 128 CG34273-PA 40..124 23..105 165 49.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17110-PA 110 GL17110-PA 8..110 11..110 135 48.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24363-PA 110 GA24363-PA 8..110 11..110 135 48.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18266-PA 108 GM18266-PA 1..106 1..107 381 89.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15197-PA 108 GD15197-PA 1..106 1..107 324 87.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11477-PA 109 GE11477-PA 1..107 1..107 324 82.2 Plus

GH08406.hyp Sequence

Translation from 1005 to 1337

> GH08406.hyp
MKSTIQIGTLCIVVLVICCLDFSSSQNSSSTSTSPTYSSSSTPKKVYLSN
LTYSIVRKIRVGTTTASSTSRSSRTRSNRKLNAKKTQAKRSQAKRSGKNR
KSNSRRASRG*

GH08406.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG42568-PB 110 CG42568-PB 1..110 1..110 535 100 Plus
CG42568-PA 110 CG42568-PA 1..110 1..110 535 100 Plus
CG34273-PA 128 CG34273-PA 40..124 23..105 165 49.4 Plus